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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96824_cuf2 >transcript:BL96824_cuf2-protein ID=transcript:BL96824_cuf2-protein|Name=transcript:BL96824_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=126bp
MDPWEAASIRGHRTEIVQSLRVQDVRSYMIQEGVMDPEHFEDIECERTRA
SKVERFLDILATRGPRAFPVFLTALEDFGYPHLADMLLRAPTDVDGCLGG
VVLLEDTIAKCRENLKKRYLCEYGWI Run BLAST on NCBI mRNA from alignment at Sc0000013:3447398..3452464- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96824_cuf2 ID=transcript:BL96824_cuf2|Name=transcript:BL96824_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=5067bp|location=Sequence derived from alignment at Sc0000013:3447398..3452464- (Branchiostoma lanceolatum)
AAAAGAGATCGATCGGTCTGGAATGATTTCATTCAGCTGTACCGGCATAA
CGGCACTGCAGCAGCCAACGGCAGGGCCGCTTACATCTGCCATATTTGGC
TACAATAACGCCCTAACAAGAGCTGGATTGTTGTGGTTATCTTCATCCCG
ATAGACAGGTACCCTTGGGCGGAGACGTCGTCGGTGCCAGACCGTTTGCA
CCCCGATGGTTACGGCTTGATAACCCCGGTCTCTAGGATATTCCGAGCCG
GCCTTTTCTGCAAGAGAGCGGGCAACGGTAAGTGGCATGGACAGCGATAC
ATGTTCTGGAAGGGAAAACTTGGTTGTTGTATTACTTATTGGCACCATGT
CAACAGGATACATAGCAGGGCAATACATATAACAGCAGCACATATTTGCA
CCAATGTTAATATATTGCCAGACGTCTGTGTAGCGACATATAGCCATTAT
CAATGACAATTGAACACAGACTCTATCTATACGATGAGCTGCTGCACATG
TAAAATAAATGTTTTATTATGTGTGCTCTATGATAATGTCTACATTTAAC
GCCTGTTTTTTTTTTTTTAAGTAGAAACATCATTGTCGCCAATGATTGTT
ATTGCTTGCATGGTTGTATGTGCATTTGTAAATGTTATTTTGAAATCAAT
CGTAGTCCGTGACCCATCAGACCTTGCTAAGGCCAATAAACCTTAATTAT
GAGCCGTCGTCTGGACACGATGACCTGCATTATCTCAAAGCTGCAGATTT
ATAATGATATTATGTATTTCTTGTAAATTTCTATTACGTGAGGCTTCGTA
TTCATTATACCGTCCATGTGGCGGCACTGCATACTAAGCATGTAACTTAC
ATTTGGTTATGGTGCTTTTAATCACAACCACAAAACAATGTTTGTAATAG
ATATGTCGATAAACTATAATAATGCTGGTACCGCGGAGCAGATGGACAAT
ATGATGATATTTCTGCCTACTTGCTTAGTATCCAGATTTAGTATATACAG
ATTAGTATGCCAAGTAGGGGTCGCTCTTGGATTCTATACGATGACATCAT
ACATTATTGTGTTGTAATTCTCAATTGCTAGGTGTGCCCGATGTTGAATT
TAAAATGAGGAAGTGGTAGTGATGAAGTAGCGTGTACTGCAAGGTTCCAT
TATCGACCCCAATGTAAAAATCAGCAAGATTTTTTATTGCACGGAAACTT
TAAGAACAAAAGAAATCATTTGATTGCATTGTTTGCAAATTATCATCTGT
TTGACCTCTCCGAATGCCCTTAAGAGGGCGTTCTGCGGTTGCAATCAGGT
GAAAGCAGACGTTACTTCATCGGATATGTATTTGATCGTCAATGTCTCCA
CCTGTCTCATGAGACCATTCCCTCATCCCGGATTCCCAATGCAAAACAAC
CACTCGTCGTTTGTATTCAATAAGGGCAAACCCAAGCCTTTGTTTGTTTC
AGATGACAACTATCTCTTTGAACAGTTACGTTTATTGTTTTGGGCATCAT
AAGCAACAAATCATAGTCCTCTAGGATTTGGCGGCCCCCTTGATTCGTTT
CATAATCCCTATGATGCAGTTGTATGGCTTTTTCAATTATATATGCCACA
GCAATTCTACGTCAATTAGATGATTGAAGAACTTCAAGGGATCGGAACAA
CTGCAATTACAGTAACGTCGTACGTCAACCGTTTGCCTTTTCGGGTGATA
CGTAATCATATTAAGTCATTCGTTCTCATCAAGAGATTTGCTAATGCGCC
GGTCGATCAAAATCATCGTGAAAAATTACTGATGATCCATTCAAAGTAAA
TCCCTTGTTGTTGAGTATTACGTAGAATGTATGTGATTTATACGGACACG
GAATTACATATACGTCCATGATCTAGTTTAGGACCAGAGACGGAGTGTGG
AGAATAATAGATGACGATCCTGGCGCCGCTCAAAAATGATCAATAGTTCG
TATTCTTTGGTCGTGTTTCACGGACATGGACATGCGCATACAAATAACTT
GGAACTGATTCTTAAGTTACACCTCTTTACGCTTGAGGCTCCGGCGGCGA
CCGTGAAGCGACCACTGAAAGTCCAAAGATTTGACAGGTTGCACAGCAAA
TTTTATGGATTAAGGGAACCTTTTTTTTAGTCTTGGGTATTTTGCTGTCT
TTTAGATCATACTTTTACATATATCTATTATGAAATTTACACGAATCACA
TTTTTGTCGCTCGGCGATCACAGTCTAGGGGAAAGAGTTAGAAGATCATA
CTCTCCCAAGCAGATGATTGGGTCCGGCTGGTTTTTACGTGTTTTGAGGC
GTTTTCGTCGGGCTTCCTATTTTGGTCGCAAACAGAAAACAAAAAAGACA
AAATAGGAACCTGACAAAAACGCCTAAAAACACGTCAAAAACCAGCTGGA
TCCACTACTCTGCTTGGAGAGTAAGAAGATCATACGTATACTTCAAAGTC
AACTTACTGATGCATTCTTGGCGCCATGGATGAGTCATCTGGTGGTCGAT
TTTTATACTGCGGGTTTCTGAGAATCTGGTAACGACCACTGTGGTTAATA
TCATTCTGTTGTACCATCCGGTTGGTTCGGCATTTCACATGCTTTGCGTA
TATCAAAACGTCATAAAAGAGAAAATTGCTGTTTGGTAAAATAAGACGTA
GGCAGACTAAAACCAGAAACTTTGCTGGCTCATTTCAGTCTGTTGCTGTT
AAAAAGGACAGAATATTTGTTCCCGGTTAACCCAATTGCAACGCTATTTG
CTGTATTCTATCTAGAATGGACATTGTAAGAAGGCCGAACTTGTCGGTAA
ACCAGCATAATCATAATGTCATCACCGATCGTATACGTGCGCGACTTACA
AAGTTAGTCTCTCTACCCATATAAGCTTATGTATCTGTAAAGTTAATCTA
TGCTTAATTTTCAATGACGACAGTGAATTGATTAATTACATAAGCGGTAT
TATACGTTATTACTTAAAGCAAGAGTTAAAAGCAACCAAAACAATATTAG
GACCCAAAATATGGAAATAAATGCTGAAATCTTTATGGCAATGACATTTA
CTAACACTATTTAGCAAATTTGCGTGATAACTTCATACTTTGAGCATTTT
AATACCGCACAAAAACGTGCCGTACGATGATTCCCTTAGTTTCGCGAGCC
TACAAAAACCCCGGCGACGATTTTCAGTGAGTTCTCACCCCACAACGACG
TTGTATTTTTGCATGATGGACGTCGCTATACATTTTGATAGTGTTGTTTG
AACTACTCATGTATAGAAATGATTAAATAAATTGACTTTCAAAATCTGAT
TTTCGGGCCCAAATATTGCTTTGGTTGAGGAGGGGTACATATTGTACTTA
CTATGTAGCGCCATATATACGTCCTAATGCCTTTCACCTTGAAGATGGAT
CCCTGGGAGGCCGCGTCTATCCGTGGTCATCGCACGGAGATTGTCCAGAG
CCTTCGCGTCCAAGATGTCCGGTCATACATGATTCAAGAGGGGGTCATGG
ACCCAGAACACTTCGAGGACATCGAGTGCGAACGCACGCGAGCATCAAAG
GTAGAACTTCAACTAAAAGGCATTCAAAATGTTTAAGCTATAATGTATAA
AGTATATGCTTACTTGCTTATGTCGAGACCTTCCAGTCACGAGTCGAGAT
GGCAGCCCAATGTATATAAATCATAATGTACATAAAGTATGTGCATTATA
CATATACACCTCCAACCCACTCATCATTGAAAGTGTGGGACTTTTTATTT
CCCACTGCTTTCAAAGAAGAAATCAAACCCCGCATTAGTACCGTAGATAT
AGAAACTTATTCTAGACTAGCAATATAGTATGATCTTGTATCACATGTAT
GCTTTATGTTTTACTTTACATTTGTACTTCGACATTGTTTTCAACATGCA
ATTAGCCTACGGGTATGAATTTTCAATAAACTTATATAATATAAAGAAGG
TATTCAGCACCATGAATATTTCTTAATAGGCAAAAGTTCCGAAAATGTTA
AACTTGACAACGTCATCTTCAAGCCTATTTAAACATACTCATTTAGATAT
TTGGAAGAAGAAAATATGTGTGTTTGGCTTCACAATTGCAACAAAGTTGG
TAGTTGCAAAATGCACATTTTCAATATGAGCTTACAAGTTTACAGAATAT
GGCTTATTAACTTCTCTTACAAACTGTTGTTCGAGTAACCAAATGTAGAG
ACTGTGAAAAACCAATGCAATTATACGATCGATATGATCTTCTTCTTTCG
GTTAGGGCAACCGCCTTCAACATGTTGAAGATTATGTTGCCTATAAGAAG
ATTGTGTTGCCTGAAGATTATTATGATCTTAACACAACATTCAGTGACAT
AATTCAACACTTCAGGTTGAGCGTTTTCTGGACATCCTGGCTACACGGGG
ACCGAGGGCCTTCCCTGTGTTCCTGACGGCCCTGGAGGATTTCGGGTATC
CACATCTAGCCGACATGCTCCTGAGGGCACCGACGGATGTAGATGGTTGT
CTTGGTAACGTGTAATTTTTGTTATACTCTTTGTAAAACTACACATTTGA
TCAATTGATATGTTATCCTGTCTTTTTCTGCTTGTACAATAAGAGCATAA
TTTGTTTTCTGTTCAAAATCCCAAATTCGACCTTGACCCTTGTTTTCCCA
AGACCTACTCAAATACGTTCCAAACATCATCACAATCTATCCGCATATTT
TTTTATTATTGCAGACGAAGACATGGGCATCGCACAGAAAAAAAGACACA
CCAAGAACAGCTATACCTCTCGTGAACTCTGTTTCACGGAGGTAAAAAGT
GACATGATTGGATATTATTAATTTATGATCACGTTATCAAAACTATATGA
CATTACGAGGAAGCCACATGTACATTGGTGTCTTCAGAGATACACATAAG
CATAGATATGTGCGACATGATCAAAGCTACACGTGACGTTTTGTTGTTTT
TGATAACCCGTTGAGCTAAGTTCATCTCCACAGGTGGCGTTGTTCTACTC
GAGGACACCATAGCGAAATGTCGAGAAAACCTAAAGAAGAGATACCTGTG
CGAGTACGGATGGATCC Coding sequence (CDS) from alignment at Sc0000013:3447398..3452464- >transcript:BL96824_cuf2 ID=transcript:BL96824_cuf2|Name=transcript:BL96824_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1134bp|location=Sequence derived from alignment at Sc0000013:3447398..3452464- (Branchiostoma lanceolatum)
ATGGATCCCTGGGAGGCCGCGTCTATCCGTGGTCATCGCACGGAGATTGT
CCAGAGCCTTCGCGTCCAAGATGTCCGGTCATACATGATTCAAGAGGGGG
TCATGGACCCAGAACACTTCGAGGACATCGAGTGCGAACGCACGCGAGCA
TCAAAGGTTGAGCGTTTTCTGGACATCCTGGCTACACGGGGACCGAGGGC
CTTCCCTGTGTTCCTGACGGCCCTGGAGGATTTCGGGTATCCACATCTAG
CCGACATGCTCCTGAGGGCACCGACGGATGTAGATGGTTGTCTTGGTGGC
GTTGTTCTACTCGAGGACACCATAGCGAAATGTCGAGAAAACCTAAAGAA
GAGATACCTGTGCGAGTACGGATGGATCATGGATCCCTGGGAGGCCGCGT
CTATCCGTGGTCATCGCACGGAGATTGTCCAGAGCCTTCGCGTCCAAGAT
GTCCGGTCATACATGATTCAAGAGGGGGTCATGGACCCAGAACACTTCGA
GGACATCGAGTGCGAACGCACGCGAGCATCAAAGGTTGAGCGTTTTCTGG
ACATCCTGGCTACACGGGGACCGAGGGCCTTCCCTGTGTTCCTGACGGCC
CTGGAGGATTTCGGGTATCCACATCTAGCCGACATGCTCCTGAGGGCACC
GACGGATGTAGATGGTTGTCTTGGTGGCGTTGTTCTACTCGAGGACACCA
TAGCGAAATGTCGAGAAAACCTAAAGAAGAGATACCTGTGCGAGTACGGA
TGGATCATGGATCCCTGGGAGGCCGCGTCTATCCGTGGTCATCGCACGGA
GATTGTCCAGAGCCTTCGCGTCCAAGATGTCCGGTCATACATGATTCAAG
AGGGGGTCATGGACCCAGAACACTTCGAGGACATCGAGTGCGAACGCACG
CGAGCATCAAAGGTTGAGCGTTTTCTGGACATCCTGGCTACACGGGGACC
GAGGGCCTTCCCTGTGTTCCTGACGGCCCTGGAGGATTTCGGGTATCCAC
ATCTAGCCGACATGCTCCTGAGGGCACCGACGGATGTAGATGGTTGTCTT
GGTGGCGTTGTTCTACTCGAGGACACCATAGCGAAATGTCGAGAAAACCT
AAAGAAGAGATACCTGTGCGAGTACGGATGGATC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000013 | genome | Sc0000013:3447398..3452464 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96824_cuf2 |
| Biotype | protein_coding |
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