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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96818_cuf7 >transcript:BL96818_cuf7-protein ID=transcript:BL96818_cuf7-protein|Name=transcript:BL96818_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=308bp
SNLYCSLPKAHAKAWHAYNTTFRASQDGKVGITVSLDWAEPRDPDLPADV
AAADYYMQVSNSQFAHPIYVNGDYPPDFKVLVQKLKQALPDKNVPDFSDE
EKARIRGSSDFFGLNHYTSCIVGHRDTPAGKGPLDNINITRSPEWRRAAT
DWLYAVPWGMRRVLKYIKETFGDPEIYITENGWSDGDVTPPVMEDTDRIC
YYMTYIDEVLKAIMYDKVKVRAYTVWSIMDNMEWETGYTQRFGMHYVTFT
DPNRPRAPKQSSRFYKDIIANNGFPEGAEITKMVQNMWGRCQNGSAVREE
LQGIIFSH Run BLAST on NCBI mRNA from alignment at Sc0000208:338201..343244+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96818_cuf7 ID=transcript:BL96818_cuf7|Name=transcript:BL96818_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=5044bp|location=Sequence derived from alignment at Sc0000208:338201..343244+ (Branchiostoma lanceolatum)
TCAAACCTTTACTGTTCACTTCCCAAGGCTCATGCTAAGGCGTGGCACGC
ATACAACACCACCTTCAGAGCAAGTCAAGACGGGAAAGTCGGAATAACCG
TTAGCCTGGATTGGGCAGAGCCACGAGACCCCGACCTTCCGGCCGATGTC
GCAGCAGCAGATTATTACATGCAGGTCTCTAACAGCCAGTTCGCACATCC
CATCTACGTCAACGGGGACTACCCGCCTGACTTCAAGGTTTTGGTGAGTT
GTAATACCCAATCACCGGACGGGAGACCTGGCGCATCCCCGTCTTGTATC
AGCCAACGAAAGGATATGTCACCCCGTAAGGGGTGGTTTAACCTCGACGG
CGCCTGTAAGTACGTCGACTGCTGCTGATGATGATGAATACCCAATCACA
CAGCCTACGATCTTCGGCCGTATATTGGCTGATCGCCAGCTAGAAGGGCG
CCCGATTTTAAAATCGGCAGAGGATCGCGCGTAATATTGACTTGAAAATC
CAGGGCTCGGTGAACTGCGAACATCGGCTCCTAAAACTCCCACGATGATC
GATAGAACACCGGGCGATTTCTATGCTTCAACTTGTAAGGTTTGATTATA
CGAAAACCAATGTCACTGAAGTTTTGACGTGGTACATACGGGATGTACTG
GGAAGATTGACTCTTTATGTCCCACGTAACTTTGATTCTCTGTTTACTTC
TGTTTAACAGGTCCAAAAACTCAAGCAGGCATTACCAGATAAGAACGTCC
CAGACTTTTCCGACGAAGAGAAGGCCAGAATTCGTGGCTCGTCGGACTTC
TTCGGCCTGAACCACTACACCAGCTGTATTGTCGGACACAGGGATACCCC
TGCTGGGAAGGTGAGCATTGTGGATACAGATTATCCTATATTGGCGACAG
GGATTCATTTCAGGTTTTTGTCAGAGATCCGCCCAACTACAAAAACAGCT
TGTTGGCACTGAATGCAGTTGACGGCATCATCAACAGCATGAAATAGGAA
GTACATTTGTACATTACCCTGGCCGTTCTGGGTTCTCGTCTTTTTTTCTT
ATAATGATTCAGGTGGAAACAAGTATAGGTTCAATTGTCATACAGCATAT
TTGTCAGATGAGTTGCACATCAGTCACAGCATCCGCTAATTCATTATTAA
GGTGACCAATTAATGGCANTCATTATTGAGGTGACCAATTAACGGCAAAT
AACTTAACGAACACTATAAGGCCAACATGCTGTTACCTCCGTGAAAACGG
AGGTATTGATTAGGTCTGTGTGCTTGTTTGGCCATGCTTATTTAAATATT
GTACAGTGCCGGGATGCTAGGCAGAGGATGGTGCAACCGGAGTTTGGCAG
GATGAGAAGATTGGCTTGGCCTGGTCCAAAGTTGGTCCTTCATGATGGGA
AGGTTGCTTTGCCCAAGTCCAAAGCTGTTCTAGCAAAGGCAGAATCAGCG
AGAAATTCACAATAATGAAAGAAGGCATTCACAAAAACTCCTCAATTTCT
TGTTGCTTAAAGGGTCCCCTGGACAACATCAACATCACAAGGTCTCCAGA
GTGGCGACGTGCTGCTACTGACTGGCTGTACGCTGTGCCATGGGGAATGC
GTCGAGTGCTCAAATACATAAAGGTACCTATCAAACTTACAGCTTTGTAG
ATTGCATTTTCATAGATCTCAAACGCACACCAACCCTGAAGAAATATGCA
TTTATCCTAACTAATGAGAGTTAAGATATGCTAGTTGAGGTATATACTAT
ACAGCGTAGAATGTGACAAATACACATTGATATGATAATTTGCTCCAAGG
AAACGTTTGGAGATCCTGAGATCTACATCACGGAAAACGGCTGGTCTGAC
GGTGACGTGACGCCACCTGTCATGGAGGACACGGACCGCATCTGTTACTA
CATGACGTACATCGATGAAGTTCTGAAGGGTGCGTATGTTCACGTTTTGC
AATGGTATGTTCTCCCTCCTATGTTTAGTTGAACACTACAACTTGAGGCC
ACATATATTCAATGACGCTGTGTGTGTGTTTTGGGTACATTTCTGCAATC
CCAATACATGTACACACAATGCAGCGTTATCAACTGCCGTACATCCTCAG
TGCTGCTATTTCTGAGACTGGAGGGGTTGCAGAGCAGGATGGGTAATGGG
GTGAAGTCTGCCATCTCTGATTGCCTTGTTCAGTAGGTAGCAAAAGGCAC
GGATAGTCAAGTATAGCAGTAGTGTTTGGGAGTTTACTGACTTAGGAACG
AAACCAGTTATTTCTACAATACGACAATTGATCATGTCTTCTGTTTCCAC
TGGCATTGCTAGCTCCACCACATTACTCTTCAAGTATCCACAGTCTTCCC
CTGTATTGCTCTGCAGCTATCATGTATGACAAAGTGAAGGTCCGAGCGTA
CACCGTCTGGTCAATAATGGACAACATGGAGTGGGAAACTGGCTACACTC
AGCGCTTCGGAATGCACTATGTCACCTTCACCGACCCGAACCGGCCTCGG
GCACCCAAGCAGTCTTCGAGGTTCTACAAGGACATCATCGCCAACAACGG
CTTCCCTGAGGGAGCAGAGATCACCAAGATGGTCCAGAACATGTGGGGGA
GATGTCAGAATGGCAGTGCTGTCAGGGAGGAGCTGCAGGGAATCATTTTT
TCTCATTAGCTCTGGAATATAAAGTATGGTACTCTACAAGCTGAGGTTGG
TGGGAAAGATGGTGACCAGACAAAAAACGGGGCATATGATAAAAAGGTCA
CCATCTTCCCCACCAACCTCTGCTTGTAGAGTAGGGAATGTGGGCAATAT
GGGGAAAAGGGAGGACAGTGCTGGGTGATATGAACCCATGCCAACATAAG
GATGTGAGCACTTGTTGTCCATGGTGGCAACCATCTATGCACCTCTCAAG
ACTTGTGAACTCTGTGTCAGCCTTCTTGTGGGAATAACTGCTTGACAAGA
GTCTGTTATCTATGAATACAGGAATAATACTACAAGCACTACTACTTCTA
CTAGGAAAAGTTCTCTTCCCATATTTAATATTCTGAACAAAATGAAGAAC
CTGCAAGGATGCTTGACAGACATTCCAAAACGTTGAGCATCAATCTAAAA
ATACAAAGTACACATTCAAGGAGATCGGGACAGAAAAATATGATGGGTAT
CACCTGGGATAACACAAACATGAAAAAAGACTCAAGTCTGGACATAAAAC
AGCATATATTTACAGTTTCCTTGACAAAGCAGCAACTAGAAAACTACATT
TCCTATGTGCTATATGAAAAATATTTTTCTGTACATTTATAAGGCAATGC
TTAAGACAGGGCAAAGAAAATAACTACAGTACATCCTTTTGGTACTATGG
TATGGAGCCAGTTGACTATTAACATTGGTCATACCAAATGTTTAGAAAAT
AATGAGGCACCAGGAACAGAAATACAAGGTAAAATGTTCTACAATGAGAA
TCAACAAAAATGGTCTTGCCTTGCGAAGAGACAACGCAGCAGCAATCTAG
AATTGTGAGTGATGAATTCTCTTGTAAGGCACTAGTCATTAACAGCTGAG
ATCACCAACACTGCTAAAACTCCATTACAAACCAAAATATCGTGCTGTTT
GGAGAAAACAATTACATCATGTTGCTTTCAGAATTCAATTAGAGCATCAA
GCACAATATCAACTTTACTTTACATAATACTAACTTTAAACTGTGATACA
TGTAATGAAGGCAGAGAAGCAAAGGGAAAACCTATAACATCTACAAATCA
AACATAGTACCAAAAGCAACTTCAGCAGCAAAACAAGCAATTTCCCAGTT
CTTAGATACAAGTTGTACATCAGTGTCTCCTAGATATCGAAGACAAGCAT
GTATTTAATATGTTGAAAGATGTTACATGCACAGTATACAAGCAGTCTAT
ACCATACATAGGAATGATTCCCAAACAAAGCCTTTAAATAATTGAATGGC
CAACTGTCCTTCCCTGTCCAAATAAAATCATCAAAGGAACCTGAATCACC
CTGTCATTTCCTACAATGGAAAGGAAAATTCCCACAAAACATTTCACTGA
ATACACATGTCTCTTTGTACTAATATCCCTGGCAATCCTATGCCATCTAA
TACTACTAGTATGCCTTTGTATGTGGAATTTATTTCCACATTGCTAGTGT
CTTAATGATTTTTTGTGGAGTACAAGCTGTATGATTCCAATTAACGGACA
TAAAACATTTAAAACCTAAGGTGCTTAAAACAAAGTAATTGATAAACTAC
TACAAATGTAACATTGCGAAGTGTTTGTTGCCATAGAGTCTATACATGTA
GGACATTTTCAGTGCAACAATTCCTGGGGCCTATCTCCCAAAGAAGAACT
GTTATGGCAAGTGTCATACCTTGATAAATTGATGTTGTGGCAAATTTATA
GCATTTCATCAACACTATGTTAACCTTTGTCATCATCACTACCAATATGC
TTTAGAGAACAGTATAAATACCCCAGCATTCCACAGGGAAACAATTAACA
AAGCCTCTTATTTAGAAATTGACACATGTTAAATTCAGGTGTCANTTAGA
AATTGGCTCATGTTCAATTCAGGTGTCAACATACTTGTACAAATGCCATG
CTGTACAGAGGCATTGAAATAGTTTTAAAAAGATTTCTAGTCATTCATTC
TAAACACATTTTCCTTGTCTTCTGTTACTCACTTTTATCCCCAATACAGG
AGAATGTGTATGATACTCTATTCATAACTTTTGAGGCACCTTTCTCACAA
TTTCAAAATAGATACAGTAACCACTGCACAAAAACAAGTTCTCCCGCCTA
TATACAACATGGCTTTTTAAAAACCACACCTTCCATGTCACCAGTCGTCT
GGAAGGACACTAATGGTCAACCCCTTCTCTCTCCATCTGTACTGCTTTGG
CACCACAAGCTGAGAAAATACAATACACAGATGACATCAGTTACATGTAC
AGAGATGCCAACATCTGAACATCATATCTTATAGCAATAAAAATATTAAA
TCTATCATCTTTACCCCTGAGGTTTCTTCAGAGGAGTCTTTCAG Coding sequence (CDS) from alignment at Sc0000208:338201..343244+ >transcript:BL96818_cuf7 ID=transcript:BL96818_cuf7|Name=transcript:BL96818_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=4635bp|location=Sequence derived from alignment at Sc0000208:338201..343244+ (Branchiostoma lanceolatum)
TCAAACCTTTACTGTTCACTTCCCAAGGCTCATGCTAAGGCGTGGCACGC
ATACAACACCACCTTCAGAGCAAGTCAAGACGGGAAAGTCGGAATAACCG
TTAGCCTGGATTGGGCAGAGCCACGAGACCCCGACCTTCCGGCCGATGTC
GCAGCAGCAGATTATTACATGCAGGTCTCTAACAGCCAGTTCGCACATCC
CATCTACGTCAACGGGGACTACCCGCCTGACTTCAAGGTTTTGGTCCAAA
AACTCAAGCAGGCATTACCAGATAAGAACGTCCCAGACTTTTCCGACGAA
GAGAAGGCCAGAATTCGTGGCTCGTCGGACTTCTTCGGCCTGAACCACTA
CACCAGCTGTATTGTCGGACACAGGGATACCCCTGCTGGGAAGGGTCCCC
TGGACAACATCAACATCACAAGGTCTCCAGAGTGGCGACGTGCTGCTACT
GACTGGCTGTACGCTGTGCCATGGGGAATGCGTCGAGTGCTCAAATACAT
AAAGGAAACGTTTGGAGATCCTGAGATCTACATCACGGAAAACGGCTGGT
CTGACGGTGACGTGACGCCACCTGTCATGGAGGACACGGACCGCATCTGT
TACTACATGACGTACATCGATGAAGTTCTGAAGGCTATCATGTATGACAA
AGTGAAGGTCCGAGCGTACACCGTCTGGTCAATAATGGACAACATGGAGT
GGGAAACTGGCTACACTCAGCGCTTCGGAATGCACTATGTCACCTTCACC
GACCCGAACCGGCCTCGGGCACCCAAGCAGTCTTCGAGGTTCTACAAGGA
CATCATCGCCAACAACGGCTTCCCTGAGGGAGCAGAGATCACCAAGATGG
TCCAGAACATGTGGGGGAGATGTCAGAATGGCAGTGCTGTCAGGGAGGAG
CTGCAGGGAATCATTTTTTCTCATTAGTCAAACCTTTACTGTTCACTTCC
CAAGGCTCATGCTAAGGCGTGGCACGCATACAACACCACCTTCAGAGCAA
GTCAAGACGGGAAAGTCGGAATAACCGTTAGCCTGGATTGGGCAGAGCCA
CGAGACCCCGACCTTCCGGCCGATGTCGCAGCAGCAGATTATTACATGCA
GGTCTCTAACAGCCAGTTCGCACATCCCATCTACGTCAACGGGGACTACC
CGCCTGACTTCAAGGTTTTGGTCCAAAAACTCAAGCAGGCATTACCAGAT
AAGAACGTCCCAGACTTTTCCGACGAAGAGAAGGCCAGAATTCGTGGCTC
GTCGGACTTCTTCGGCCTGAACCACTACACCAGCTGTATTGTCGGACACA
GGGATACCCCTGCTGGGAAGGGTCCCCTGGACAACATCAACATCACAAGG
TCTCCAGAGTGGCGACGTGCTGCTACTGACTGGCTGTACGCTGTGCCATG
GGGAATGCGTCGAGTGCTCAAATACATAAAGGAAACGTTTGGAGATCCTG
AGATCTACATCACGGAAAACGGCTGGTCTGACGGTGACGTGACGCCACCT
GTCATGGAGGACACGGACCGCATCTGTTACTACATGACGTACATCGATGA
AGTTCTGAAGGCTATCATGTATGACAAAGTGAAGGTCCGAGCGTACACCG
TCTGGTCAATAATGGACAACATGGAGTGGGAAACTGGCTACACTCAGCGC
TTCGGAATGCACTATGTCACCTTCACCGACCCGAACCGGCCTCGGGCACC
CAAGCAGTCTTCGAGGTTCTACAAGGACATCATCGCCAACAACGGCTTCC
CTGAGGGAGCAGAGATCACCAAGATGGTCCAGAACATGTGGGGGAGATGT
CAGAATGGCAGTGCTGTCAGGGAGGAGCTGCAGGGAATCATTTTTTCTCA
TTAGTCAAACCTTTACTGTTCACTTCCCAAGGCTCATGCTAAGGCGTGGC
ACGCATACAACACCACCTTCAGAGCAAGTCAAGACGGGAAAGTCGGAATA
ACCGTTAGCCTGGATTGGGCAGAGCCACGAGACCCCGACCTTCCGGCCGA
TGTCGCAGCAGCAGATTATTACATGCAGGTCTCTAACAGCCAGTTCGCAC
ATCCCATCTACGTCAACGGGGACTACCCGCCTGACTTCAAGGTTTTGGTC
CAAAAACTCAAGCAGGCATTACCAGATAAGAACGTCCCAGACTTTTCCGA
CGAAGAGAAGGCCAGAATTCGTGGCTCGTCGGACTTCTTCGGCCTGAACC
ACTACACCAGCTGTATTGTCGGACACAGGGATACCCCTGCTGGGAAGGGT
CCCCTGGACAACATCAACATCACAAGGTCTCCAGAGTGGCGACGTGCTGC
TACTGACTGGCTGTACGCTGTGCCATGGGGAATGCGTCGAGTGCTCAAAT
ACATAAAGGAAACGTTTGGAGATCCTGAGATCTACATCACGGAAAACGGC
TGGTCTGACGGTGACGTGACGCCACCTGTCATGGAGGACACGGACCGCAT
CTGTTACTACATGACGTACATCGATGAAGTTCTGAAGGCTATCATGTATG
ACAAAGTGAAGGTCCGAGCGTACACCGTCTGGTCAATAATGGACAACATG
GAGTGGGAAACTGGCTACACTCAGCGCTTCGGAATGCACTATGTCACCTT
CACCGACCCGAACCGGCCTCGGGCACCCAAGCAGTCTTCGAGGTTCTACA
AGGACATCATCGCCAACAACGGCTTCCCTGAGGGAGCAGAGATCACCAAG
ATGGTCCAGAACATGTGGGGGAGATGTCAGAATGGCAGTGCTGTCAGGGA
GGAGCTGCAGGGAATCATTTTTTCTCATTAGTCAAACCTTTACTGTTCAC
TTCCCAAGGCTCATGCTAAGGCGTGGCACGCATACAACACCACCTTCAGA
GCAAGTCAAGACGGGAAAGTCGGAATAACCGTTAGCCTGGATTGGGCAGA
GCCACGAGACCCCGACCTTCCGGCCGATGTCGCAGCAGCAGATTATTACA
TGCAGGTCTCTAACAGCCAGTTCGCACATCCCATCTACGTCAACGGGGAC
TACCCGCCTGACTTCAAGGTTTTGGTCCAAAAACTCAAGCAGGCATTACC
AGATAAGAACGTCCCAGACTTTTCCGACGAAGAGAAGGCCAGAATTCGTG
GCTCGTCGGACTTCTTCGGCCTGAACCACTACACCAGCTGTATTGTCGGA
CACAGGGATACCCCTGCTGGGAAGGGTCCCCTGGACAACATCAACATCAC
AAGGTCTCCAGAGTGGCGACGTGCTGCTACTGACTGGCTGTACGCTGTGC
CATGGGGAATGCGTCGAGTGCTCAAATACATAAAGGAAACGTTTGGAGAT
CCTGAGATCTACATCACGGAAAACGGCTGGTCTGACGGTGACGTGACGCC
ACCTGTCATGGAGGACACGGACCGCATCTGTTACTACATGACGTACATCG
ATGAAGTTCTGAAGGCTATCATGTATGACAAAGTGAAGGTCCGAGCGTAC
ACCGTCTGGTCAATAATGGACAACATGGAGTGGGAAACTGGCTACACTCA
GCGCTTCGGAATGCACTATGTCACCTTCACCGACCCGAACCGGCCTCGGG
CACCCAAGCAGTCTTCGAGGTTCTACAAGGACATCATCGCCAACAACGGC
TTCCCTGAGGGAGCAGAGATCACCAAGATGGTCCAGAACATGTGGGGGAG
ATGTCAGAATGGCAGTGCTGTCAGGGAGGAGCTGCAGGGAATCATTTTTT
CTCATTAGTCAAACCTTTACTGTTCACTTCCCAAGGCTCATGCTAAGGCG
TGGCACGCATACAACACCACCTTCAGAGCAAGTCAAGACGGGAAAGTCGG
AATAACCGTTAGCCTGGATTGGGCAGAGCCACGAGACCCCGACCTTCCGG
CCGATGTCGCAGCAGCAGATTATTACATGCAGGTCTCTAACAGCCAGTTC
GCACATCCCATCTACGTCAACGGGGACTACCCGCCTGACTTCAAGGTTTT
GGTCCAAAAACTCAAGCAGGCATTACCAGATAAGAACGTCCCAGACTTTT
CCGACGAAGAGAAGGCCAGAATTCGTGGCTCGTCGGACTTCTTCGGCCTG
AACCACTACACCAGCTGTATTGTCGGACACAGGGATACCCCTGCTGGGAA
GGGTCCCCTGGACAACATCAACATCACAAGGTCTCCAGAGTGGCGACGTG
CTGCTACTGACTGGCTGTACGCTGTGCCATGGGGAATGCGTCGAGTGCTC
AAATACATAAAGGAAACGTTTGGAGATCCTGAGATCTACATCACGGAAAA
CGGCTGGTCTGACGGTGACGTGACGCCACCTGTCATGGAGGACACGGACC
GCATCTGTTACTACATGACGTACATCGATGAAGTTCTGAAGGCTATCATG
TATGACAAAGTGAAGGTCCGAGCGTACACCGTCTGGTCAATAATGGACAA
CATGGAGTGGGAAACTGGCTACACTCAGCGCTTCGGAATGCACTATGTCA
CCTTCACCGACCCGAACCGGCCTCGGGCACCCAAGCAGTCTTCGAGGTTC
TACAAGGACATCATCGCCAACAACGGCTTCCCTGAGGGAGCAGAGATCAC
CAAGATGGTCCAGAACATGTGGGGGAGATGTCAGAATGGCAGTGCTGTCA
GGGAGGAGCTGCAGGGAATCATTTTTTCTCATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000208 | genome | Sc0000208:338201..343244 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96818_cuf7 |
| Biotype | protein_coding |
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