|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96800_cuf1 >transcript:BL96800_cuf1-protein ID=transcript:BL96800_cuf1-protein|Name=transcript:BL96800_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=280bp
CGNGDVFHDSQACDGTRDCSTGEDEANCDECAMECLTVSGDPCIPSGWIC
DEEIEDCLDGEDEQACVEGVPKHCFFTCRDNVTCLPTRHLGDGHHDCAGG
EDERPSDVEEALGRRWASCGYNCASVYGNASCVPDAFSCDGDADCWDEED
EQDCAKGRPRDCPTFFCGLPSSPDLEYCVHGHLICDGYPDCAAGEDEQGC
GNADGASTQASAAPSVGPTAEPTSGQVSFKDQTGGKANSILFLLKTILKQ
SSYVALTISLQNHVTHVNSKTCRDIFSKIF Run BLAST on NCBI mRNA from alignment at Sc0000090:749605..753835- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96800_cuf1 ID=transcript:BL96800_cuf1|Name=transcript:BL96800_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4231bp|location=Sequence derived from alignment at Sc0000090:749605..753835- (Branchiostoma lanceolatum)
GTGTGGGAATGGTGACGTGTTCCACGACAGCCAGGCTTGTGACGGCACAA
GAGACTGTTCAACTGGGGAGGATGAGGCAAACTGTGACGGTAAGACTTCT
CCAGACCCTTCAGAGATAGTAAAGAAAATCACACAACAGTTTTGAAAGAG
AGGCGAATACGCAGGCTACGTGACTTGAGGTGGATGCAAAAGTAAAATTC
TTCAATAGGAAAATCTCTTCTTGGCTGTCAATGCCCCTAAGTTCAGACTA
TATAGAAAAATTTTAAGACTTTATTTAGCCCACATGCAATGTTGTTGTTT
GTTCGTCCCATTGCTTTCTTAACTCTGATCCTATTCATATGATGCTTGAA
CCTATTATACCTCCGTCGCCGTGTTGGACTGAGACCACCAAAAATCAAAT
TGACACAAAAACTTGTTTATCCCAAGAACACTGTCGTCCATGTGATACCC
ACAAAACCCTTGTTATTATTGATGTTATCAGATTTTACTCATCTTGTGCA
CTGTGATGATTCTTATGCTGTTTGCATCTTAATCTATCACATTGTTTTAT
GCAGTTAATGTAGTATGTTTTTGTGCAGCATTAAAACCAATACAATTCAG
TCCGATAAGAACTGCAAGGTTGATTCAACTATAAAATTTTGAATTAGTTA
AATACTCAGTATGGCACTTGAACCTTATCCTTACACCTGACTTAAACAGA
AGAACTTAACTGCACAACAATTGTACACGGTACACTGTATGGCGACAACT
ATCAAACATAATACAAATTAGAGGTATAGACGAAAACTTAACATCCTAAT
TACTAATAAACAATACAATACAATTACAATAAGGGCTCGCATAAGTATTT
GATATACTGTTACAATCAAGTGGGGCTCTTCATTAGTTTTGGTGTTTTTT
TTCTAATGTAAAGCAGTCTTTTGTATAATTGCCTATTTTTTGCATTGCCG
GGTTGATGCGTGTAAAGATATACTCAAAACAGAAGATGGGAGCCACTCAC
ATTCCAAACGTTGTGCCCCCTTCAGAGTGTGCGATGGAATGTCTGACTGT
CTCGGGTGACCCCTGCATCCCGAGCGGTTGGATCTGTGATGAGGAAATAG
AAGACTGTCTGGATGGGGAGGACGAACAGGCGTGTGTGGAGGGTAGGTGT
TGGAATGATACTAATACCAGGGCCACATTTCTAAACCAGGACCCGACTGA
ACTGTTTGCAGGAGCGAAAAATAAAAGAACATCACTCACTCACTTACTCA
CTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACCCACTCATG
ACTTATGACCTCAGTGGTCGTAGGGGCGTCATAACAGCCAGCCGCAGTGA
TCCGTGCCCATCCCGTTCTGTCCTCGGCCTCTCTGATCAGTTGTGTAGTA
CTCAGGCCAGTCCATGTCTTGATGTTGTCCAACCAGGTCTTCTTTGGCCT
TCCTCGTTTCCTCCCTCCTGCTACTGTACCTTGCAGAATGGTCTTGGCAA
GTGTGTTGCGTCGGCATACGTGCCCGAACCACTTCAGCTTCCGGCGCTTG
ACCGTTGACAGGAGTGTTTGACGTCTGCCGCAGACTGCCTCTACCTCCCT
CCGTACCGAGTCGTTGGTCCTCCGTTGCAGGTAGGAGATGCTAAGGATCT
TCCGTAGGCATCTCATCTCGAGGGCTTCTATGCGGCGCTCTGTTTCGGCC
GTTGTGGTCCAGCTTTCGCAGCCATAGAGAAAGATGGAGACAAGTGACTG
GTAAAGGTTGATCTTAACTGGCAGGCTGATGTTTTTGCTCTGCAGGATGG
GCCTGAGTTTAGCAAGTGCCGCTGTAGCTTGTGCAATCCTTGCTTTGATT
TCCTGTGTGGAAGTACCGTCCCTGTTAAGGATGGAGCCAACTTGAAGGTA
TTTGAAGAAGTCCACGTCTTCGAGGACTTCGCCACCCATGGACACCGTAG
TTCTTGCGCCTGGTACTTGGCTGTTGACCATGCCTTTGCTCTTAGATGTG
CTGACTTCCATGCCATAAGCGGTGCTTCTACTCTCCACTCGGGTTGATAG
CTCTTGATGTTCATCTTTAGAGCATAGCGAGAGCATAGCGAGAAATATAC
AAAAATTTTGCTCATGACTAATTTTCTTCTTGTTTTTTGTTGTTTTAGTT
TTGTTGTCTTTTATATCATACTTTTCGTTCCCTCAAACCCGGTTTGTAAT
TGTGGCCCTGACATGAAATAATGACAGATGACGCCCAGACCCTCCCCCAA
CCTAGCCAACAGGCAACATCCACCATTGCCCCAACGTCACAGCAGGGGTA
TAATGTATTTTTGTGTATTGGGGGGGGGGGGGCAAAATCATGGCTGCAGC
TGGCCCCCAGGATTAACGACGGGCTTTTTCTTTGTACAAAATCTTGATGT
GTCTTCCTCTTTAAAGTAATTCAGAGATTTAAGCACAAAACGTTGAATTT
CGGTTTCATCGTCCAAATGAGTCCACGACATATTTTTTTGGGTCCAACAC
TAAGAATGTGAAAGATAATCTATTAGCAAGTGCCTACTATGATTTCTATG
GCTTTGTCTGTTGCCATGGTTTACCTGTGTTTCGTACTTTCCATGACAGG
TGTGCCTAAACACTGCTTCTTCACCTGCCGTGACAACGTCACCTGTCTGC
CGACACGTCACCTGGGGGACGGGCATCATGACTGTGCTGGTGGTGAGGAC
GAAAGACCCAGTGACGGTAAGTCGGAACCGGGTTTAAAAATGTCAAGCTT
ACCACTACACACACAAGCATACAAGCGCGCACACACGCACATACACACAG
ACACACACACACACACACACACACACACACACACATATATATATATATAN
CGCGCACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACAGAGAGAGAGAGATAGAGAGAGAGAGAGAGA
GAGAGATAGATATAGATATAGATATAGATATAGATATAGATATAGATAGA
TATAGATAGATATAGATAGATATAGATAGAAATATACAAATCTGTTTCTA
TAGTTGAAGAGGCTCTGGGGCGCAGGTGGGCCTCCTGTGGCTACAACTGT
GCGTCCGTCTACGGCAACGCGTCGTGCGTTCCTGACGCGTTCAGCTGCGA
CGGTGACGCGGACTGTTGGGATGAGGAGGACGAGCAGGACTGTGCCAAAG
GTCGCCCTAGGGATTGCCCGACGTTCTTCTGCGGCCTGCCCAGCTCTCCG
GACCTCGAGTACTGCGTGCACGGTCATCTGATCTGTGACGGGTACCCGGA
CTGTGCAGCAGGGGAGGACGAGCAGGGGTGCGGCAACGCGGACGGCGCGT
CAACTCAAGCCAGCGCCGCGCCGAGCGTCGGACCGACCGCGGAACCGACA
AGTGGTCAAGTATCCTTCAAAGATCAAACAGGTGGCAAAGCAAATAGTAT
ATTATTTCTCCTAAAAACAATTTTAAAACAGAGTTCTTATGTAGCCTTAA
CAATTTCTTTGCAAAATCACGTCACTCATGTAAATAGTAAAACTTGTAGG
GATATTTTTTCAAAAATCTTTTAAGATAAAAGATCAGATATCTAGTTTCA
ATTTTACCCTGTTCTAAGGCCAAACCATATTTCCATGGTTCTAGGACATC
TTAGGTGAAATTATAGCACGAGGACCTCATGAAAGACTTGAGACAGGGAC
AGGGAGGAAATGTATCACTACCGCATTCACTTTATACAACTCAATGTATT
AAAGCATAAACCTGATCCCCAGGCTTTGGTTTCACCATGTCTTCCCTGTA
TACACCAAATAAACAAATATGATATCAAAGCAAATTTGAAAGAAAAGAAA
AAAACTATCAACAGCATAATGGCCGGGCCATATCTACGTGTTTTTATGTT
TTTGGCCCGCTCTATGGGAAAAATATGTCGTATGTATACTGACCAAATCT
CGTTATACCAGTGATCACTTAAGTTTGTTTATGCGACATCTTCAAAAATC
CATCATCCGGTTTGTAGCGACAAATTTCTTTAACCTTTAGCACACAAAAG
CACCCCATTCTCTGTTGGTTACAGAGTTAGGCAGCAGGCAGAAGGTTAAC
TGTCTCAATTGTAATGCATGATTTTTTTTCACCAACCTGTTTGGAGTGTA
CATAGTAGTTACTATTTATGCTTCCTTTTCTTATTCATTTCTATGCTATC
TTTCTTGTCTCGTTTATTCTGCTATTGTGAT Coding sequence (CDS) from alignment at Sc0000090:749605..753835- >transcript:BL96800_cuf1 ID=transcript:BL96800_cuf1|Name=transcript:BL96800_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3372bp|location=Sequence derived from alignment at Sc0000090:749605..753835- (Branchiostoma lanceolatum)
TGTGGGAATGGTGACGTGTTCCACGACAGCCAGGCTTGTGACGGCACAAG
AGACTGTTCAACTGGGGAGGATGAGGCAAACTGTGACGAGTGTGCGATGG
AATGTCTGACTGTCTCGGGTGACCCCTGCATCCCGAGCGGTTGGATCTGT
GATGAGGAAATAGAAGACTGTCTGGATGGGGAGGACGAACAGGCGTGTGT
GGAGGGTGTGCCTAAACACTGCTTCTTCACCTGCCGTGACAACGTCACCT
GTCTGCCGACACGTCACCTGGGGGACGGGCATCATGACTGTGCTGGTGGT
GAGGACGAAAGACCCAGTGACGTTGAAGAGGCTCTGGGGCGCAGGTGGGC
CTCCTGTGGCTACAACTGTGCGTCCGTCTACGGCAACGCGTCGTGCGTTC
CTGACGCGTTCAGCTGCGACGGTGACGCGGACTGTTGGGATGAGGAGGAC
GAGCAGGACTGTGCCAAAGGTCGCCCTAGGGATTGCCCGACGTTCTTCTG
CGGCCTGCCCAGCTCTCCGGACCTCGAGTACTGCGTGCACGGTCATCTGA
TCTGTGACGGGTACCCGGACTGTGCAGCAGGGGAGGACGAGCAGGGGTGC
GGCAACGCGGACGGCGCGTCAACTCAAGCCAGCGCCGCGCCGAGCGTCGG
ACCGACCGCGGAACCGACAAGTGGTCAAGTATCCTTCAAAGATCAAACAG
GTGGCAAAGCAAATAGTATATTATTTCTCCTAAAAACAATTTTAAAACAG
AGTTCTTATGTAGCCTTAACAATTTCTTTGCAAAATCACGTCACTCATGT
AAATAGTAAAACTTGTAGGGATATTTTTTCAAAAATCTTTTAATGTGGGA
ATGGTGACGTGTTCCACGACAGCCAGGCTTGTGACGGCACAAGAGACTGT
TCAACTGGGGAGGATGAGGCAAACTGTGACGAGTGTGCGATGGAATGTCT
GACTGTCTCGGGTGACCCCTGCATCCCGAGCGGTTGGATCTGTGATGAGG
AAATAGAAGACTGTCTGGATGGGGAGGACGAACAGGCGTGTGTGGAGGGT
GTGCCTAAACACTGCTTCTTCACCTGCCGTGACAACGTCACCTGTCTGCC
GACACGTCACCTGGGGGACGGGCATCATGACTGTGCTGGTGGTGAGGACG
AAAGACCCAGTGACGTTGAAGAGGCTCTGGGGCGCAGGTGGGCCTCCTGT
GGCTACAACTGTGCGTCCGTCTACGGCAACGCGTCGTGCGTTCCTGACGC
GTTCAGCTGCGACGGTGACGCGGACTGTTGGGATGAGGAGGACGAGCAGG
ACTGTGCCAAAGGTCGCCCTAGGGATTGCCCGACGTTCTTCTGCGGCCTG
CCCAGCTCTCCGGACCTCGAGTACTGCGTGCACGGTCATCTGATCTGTGA
CGGGTACCCGGACTGTGCAGCAGGGGAGGACGAGCAGGGGTGCGGCAACG
CGGACGGCGCGTCAACTCAAGCCAGCGCCGCGCCGAGCGTCGGACCGACC
GCGGAACCGACAAGTGGTCAAGTATCCTTCAAAGATCAAACAGGTGGCAA
AGCAAATAGTATATTATTTCTCCTAAAAACAATTTTAAAACAGAGTTCTT
ATGTAGCCTTAACAATTTCTTTGCAAAATCACGTCACTCATGTAAATAGT
AAAACTTGTAGGGATATTTTTTCAAAAATCTTTTAATGTGGGAATGGTGA
CGTGTTCCACGACAGCCAGGCTTGTGACGGCACAAGAGACTGTTCAACTG
GGGAGGATGAGGCAAACTGTGACGAGTGTGCGATGGAATGTCTGACTGTC
TCGGGTGACCCCTGCATCCCGAGCGGTTGGATCTGTGATGAGGAAATAGA
AGACTGTCTGGATGGGGAGGACGAACAGGCGTGTGTGGAGGGTGTGCCTA
AACACTGCTTCTTCACCTGCCGTGACAACGTCACCTGTCTGCCGACACGT
CACCTGGGGGACGGGCATCATGACTGTGCTGGTGGTGAGGACGAAAGACC
CAGTGACGTTGAAGAGGCTCTGGGGCGCAGGTGGGCCTCCTGTGGCTACA
ACTGTGCGTCCGTCTACGGCAACGCGTCGTGCGTTCCTGACGCGTTCAGC
TGCGACGGTGACGCGGACTGTTGGGATGAGGAGGACGAGCAGGACTGTGC
CAAAGGTCGCCCTAGGGATTGCCCGACGTTCTTCTGCGGCCTGCCCAGCT
CTCCGGACCTCGAGTACTGCGTGCACGGTCATCTGATCTGTGACGGGTAC
CCGGACTGTGCAGCAGGGGAGGACGAGCAGGGGTGCGGCAACGCGGACGG
CGCGTCAACTCAAGCCAGCGCCGCGCCGAGCGTCGGACCGACCGCGGAAC
CGACAAGTGGTCAAGTATCCTTCAAAGATCAAACAGGTGGCAAAGCAAAT
AGTATATTATTTCTCCTAAAAACAATTTTAAAACAGAGTTCTTATGTAGC
CTTAACAATTTCTTTGCAAAATCACGTCACTCATGTAAATAGTAAAACTT
GTAGGGATATTTTTTCAAAAATCTTTTAATGTGGGAATGGTGACGTGTTC
CACGACAGCCAGGCTTGTGACGGCACAAGAGACTGTTCAACTGGGGAGGA
TGAGGCAAACTGTGACGAGTGTGCGATGGAATGTCTGACTGTCTCGGGTG
ACCCCTGCATCCCGAGCGGTTGGATCTGTGATGAGGAAATAGAAGACTGT
CTGGATGGGGAGGACGAACAGGCGTGTGTGGAGGGTGTGCCTAAACACTG
CTTCTTCACCTGCCGTGACAACGTCACCTGTCTGCCGACACGTCACCTGG
GGGACGGGCATCATGACTGTGCTGGTGGTGAGGACGAAAGACCCAGTGAC
GTTGAAGAGGCTCTGGGGCGCAGGTGGGCCTCCTGTGGCTACAACTGTGC
GTCCGTCTACGGCAACGCGTCGTGCGTTCCTGACGCGTTCAGCTGCGACG
GTGACGCGGACTGTTGGGATGAGGAGGACGAGCAGGACTGTGCCAAAGGT
CGCCCTAGGGATTGCCCGACGTTCTTCTGCGGCCTGCCCAGCTCTCCGGA
CCTCGAGTACTGCGTGCACGGTCATCTGATCTGTGACGGGTACCCGGACT
GTGCAGCAGGGGAGGACGAGCAGGGGTGCGGCAACGCGGACGGCGCGTCA
ACTCAAGCCAGCGCCGCGCCGAGCGTCGGACCGACCGCGGAACCGACAAG
TGGTCAAGTATCCTTCAAAGATCAAACAGGTGGCAAAGCAAATAGTATAT
TATTTCTCCTAAAAACAATTTTAAAACAGAGTTCTTATGTAGCCTTAACA
ATTTCTTTGCAAAATCACGTCACTCATGTAAATAGTAAAACTTGTAGGGA
TATTTTTTCAAAAATCTTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000090 | genome | Sc0000090:749605..753835 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96800_cuf1 |
| Biotype | protein_coding |
|
