|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96795_cuf13 >transcript:BL96795_cuf13-protein ID=transcript:BL96795_cuf13-protein|Name=transcript:BL96795_cuf13|organism=Branchiostoma lanceolatum|type=polypeptide|length=220bp
AGSGVLEATVNCPTDPVTSQMDSIGQDRFKLVFVPRCNHPHDIAFKFNGN
VVPGSPYKCYISDASQAQARGDGLDRVPIKTPSSFVIDTSRAGNGDVVTI
ITSPSGRNIPCRLSHQGTLYDAEYVPLEVGDHQIDIHFDQQPIPGSPFHC
HVYDVSGVRIREIPQGRVGKTVQVEVDTSLAGRGSLQGNVSVLRNPVASN
LSSLDSDRYLMTFVPQSVDP Run BLAST on NCBI mRNA from alignment at Sc0000071:928016..930654- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96795_cuf13 ID=transcript:BL96795_cuf13|Name=transcript:BL96795_cuf13|organism=Branchiostoma lanceolatum|type=mRNA|length=2639bp|location=Sequence derived from alignment at Sc0000071:928016..930654- (Branchiostoma lanceolatum)
AAGCTGGTTCAGGCGTTCTTGAGGCAACGGTCAACTGTCCGACTGACCCT
GTCACCAGTCAGATGGACAGCATCGGACAGGACCGGTTCAAACTGGTCTT
TGTTCCCCGCTGCAACCATCCCCACGACATTGCATTCAAGTTCAATGGGA
ATGTTGTACCAGGTAAAGCCACCTTTTCAAACTGTGTATTTTGTCCCTAT
ACATTTTGTTCTTGATTCTTAAGAACATCTAAAAGCTAATTTATGGTAGA
GAAAATGGTATGATAATTCTTTATGGTAGTGTGAAATATGGAGTTATTTC
ATCGAGATTGATAATTTGTCCACCAATATGCTTCACATTTAGGATCATAG
AAAACCTTTAATCAGAACAGCACAGTGAAACTTAAAAAGAATACAATGTT
TGGCCTCTTCATAGTCTTAATTACCATGATCAAGTTATGTGGATATGCAG
TTATATCGGTATTTACTAGAAAGGTGATCATACAGTGAGAGAGAGACACT
TATTGAGACAATTCTCGATCTTCATCACTACCTTATCCCCCCAACATCCT
AGACAGGTTGAGGGACTATAGATAGGTAGGTACATCATACAGAAGTCTTT
ATCCTGTCATTATATTAAATTAAAGTTTCGTTGTGTTTTCTACCCTGTCA
CAGGGAGCCCCTACAAGTGTTACATCTCTGATGCCAGCCAGGCGCAGGCT
AGAGGAGATGGGCTGGACCGCGTGCCCATCAAAACTCCCTCCAGCTTTGT
CATCGACACCAGCAGGGCTGGGAATGGAGATGTCGTCACCATCATTACAA
GTAGGCTTCATACTCAAATAGATTGATGTTTCTACAAAAGCTGTTTCCAG
CTTTAAATTTTTCCCTTCCTACTCCTTGTTTGGGAGCCTATATTTTTTTT
TGTTGCATTCATCATTTTAAGGTCACAAAAATACATTTTTACCAATTTGT
TGTCATGGAGTTAAGATGTTTCAGACAAATGGGGGAATTTTTGGTCCGTT
CCAACAAGCAAATTTCCGTCCAAGGACAGAGAGACAGGTCCTGGAGACAG
TCATGGTTTCTACATGTATTTATCAGGATTTCTGCATTCATGTGCTTAAA
GGCATATCATGATCAAGGGGGAAATGGTCGCGTCTTTAATTGATAGTTAC
AAAATGAAAATCATGATTAATGTCAAGTAACTAGAAAAATCATGTCTGCT
AAGTTTGATAGCAGAAATCAAGATACCCTGATATAGGAAGTCATGCTCTT
TCAGTTAGTGAGATGTGTTTGAAGGGTTTCAAAGACAATGTTGTACAAAA
TTGGAAAACAACCATCCATTTTGTGTTCTCAGGCCCCAGCGGAAGGAACA
TCCCTTGCAGGCTGAGTCATCAGGGGACGCTGTACGATGCTGAATATGTT
CCTCTGGAAGTCGGTCAGTTATATTCCTTTGTATTAAAGATGTGTCTGAA
TAGACCATTCTCTATTTCATTTTACAACAAGAAGACCTGATAATCATTAA
ATTTCACAGATTAACCATTCATAAAACTGAATTCTTTGGATGACAGAATT
CAGTTTTGTTAACATTTAATAAGTTTGAATTTCCTTTATTTGTTTGGCTT
ATGCTTGAATCTTTTCAGAAAAGATGGTTTAGAAGAGTTTTCCACAAAGT
TTAACATAATATGTAAGGATATTAGTCTATGAAACAAACTTTCATGTAAA
CGTCTCTGTTTATACGTTTGTTCCAATTACACAGATTATCATGAACAATG
ATCATTCTTAGACTATCATTATCAATGACATGTTCTTGCCAACATAAAGT
GACAGGTCATTCGGTGTAATATAACCAGCTGCTGCTGCGCCAGCCTGTGA
AGCTGGTGTGTTACACCAAAGGGCGGTTATACCGGCTATATAGATATGTA
GATACAAATAATGATACAGGACTGTAATGATTGCTCCTATCCTCCCACAG
GTGACCACCAGATTGACATCCATTTTGACCAGCAGCCGATCCCCGGCAGC
CCGTTCCACTGCCACGTGTACGACGTGAGCGGGGTCCGCATCAGAGAGAT
CCCGCAGGGCAGGGTTGGCAAGACTGTGCAGGTGGAAGGTCAGGAATTGT
ACCAACATCCATAATGTTAACAAAACCTACTCATATATCATTATGCTATT
GCTATATACTCTTGCATTAGCTGGATTAAATCTAAGCCTTATGGAACTGG
TTATGCACCAGTAGATGCCATACTTTGTACCTTGTACAATTGTTGTGCAA
TAAAGTTATCATTTGAAGACCAAATGTCGTCACAATCCATCCAACCGTTC
TAAAGTTTACACTAACCACAAATATCTGGAAACAGATACATACAGACACA
CACACACACAAAGACAGCCATTCAGCATGCCTGCAAATCTGGTATGTTGC
ACCAAAGGGTGGTTATACCCGCTATATAGATACATGTACAAGTGTATTGT
AACTTGTTTGCTTGCAACAAATATTTGTAGTAAAGTGAAACTCATCCCCA
CAGTTGACACGAGTCTTGCTGGCCGGGGCAGCCTACAGGGAAATGTGAGT
GTCCTGAGGAACCCTGTGGCCAGTAACCTGTCCAGCCTGGACTCCGACCG
CTACCTGATGACCTTTGTCCCTCAGTCTGTCGACCCTCA Coding sequence (CDS) from alignment at Sc0000071:928016..930654- >transcript:BL96795_cuf13 ID=transcript:BL96795_cuf13|Name=transcript:BL96795_cuf13|organism=Branchiostoma lanceolatum|type=CDS|length=3300bp|location=Sequence derived from alignment at Sc0000071:928016..930654- (Branchiostoma lanceolatum)
GCTGGTTCAGGCGTTCTTGAGGCAACGGTCAACTGTCCGACTGACCCTGT
CACCAGTCAGATGGACAGCATCGGACAGGACCGGTTCAAACTGGTCTTTG
TTCCCCGCTGCAACCATCCCCACGACATTGCATTCAAGTTCAATGGGAAT
GTTGTACCAGGGAGCCCCTACAAGTGTTACATCTCTGATGCCAGCCAGGC
GCAGGCTAGAGGAGATGGGCTGGACCGCGTGCCCATCAAAACTCCCTCCA
GCTTTGTCATCGACACCAGCAGGGCTGGGAATGGAGATGTCGTCACCATC
ATTACAAGCCCCAGCGGAAGGAACATCCCTTGCAGGCTGAGTCATCAGGG
GACGCTGTACGATGCTGAATATGTTCCTCTGGAAGTCGGTGACCACCAGA
TTGACATCCATTTTGACCAGCAGCCGATCCCCGGCAGCCCGTTCCACTGC
CACGTGTACGACGTGAGCGGGGTCCGCATCAGAGAGATCCCGCAGGGCAG
GGTTGGCAAGACTGTGCAGGTGGAAGTTGACACGAGTCTTGCTGGCCGGG
GCAGCCTACAGGGAAATGTGAGTGTCCTGAGGAACCCTGTGGCCAGTAAC
CTGTCCAGCCTGGACTCCGACCGCTACCTGATGACCTTTGTCCCTCAGTC
TGTCGACCCTGCTGGTTCAGGCGTTCTTGAGGCAACGGTCAACTGTCCGA
CTGACCCTGTCACCAGTCAGATGGACAGCATCGGACAGGACCGGTTCAAA
CTGGTCTTTGTTCCCCGCTGCAACCATCCCCACGACATTGCATTCAAGTT
CAATGGGAATGTTGTACCAGGGAGCCCCTACAAGTGTTACATCTCTGATG
CCAGCCAGGCGCAGGCTAGAGGAGATGGGCTGGACCGCGTGCCCATCAAA
ACTCCCTCCAGCTTTGTCATCGACACCAGCAGGGCTGGGAATGGAGATGT
CGTCACCATCATTACAAGCCCCAGCGGAAGGAACATCCCTTGCAGGCTGA
GTCATCAGGGGACGCTGTACGATGCTGAATATGTTCCTCTGGAAGTCGGT
GACCACCAGATTGACATCCATTTTGACCAGCAGCCGATCCCCGGCAGCCC
GTTCCACTGCCACGTGTACGACGTGAGCGGGGTCCGCATCAGAGAGATCC
CGCAGGGCAGGGTTGGCAAGACTGTGCAGGTGGAAGTTGACACGAGTCTT
GCTGGCCGGGGCAGCCTACAGGGAAATGTGAGTGTCCTGAGGAACCCTGT
GGCCAGTAACCTGTCCAGCCTGGACTCCGACCGCTACCTGATGACCTTTG
TCCCTCAGTCTGTCGACCCTGCTGGTTCAGGCGTTCTTGAGGCAACGGTC
AACTGTCCGACTGACCCTGTCACCAGTCAGATGGACAGCATCGGACAGGA
CCGGTTCAAACTGGTCTTTGTTCCCCGCTGCAACCATCCCCACGACATTG
CATTCAAGTTCAATGGGAATGTTGTACCAGGGAGCCCCTACAAGTGTTAC
ATCTCTGATGCCAGCCAGGCGCAGGCTAGAGGAGATGGGCTGGACCGCGT
GCCCATCAAAACTCCCTCCAGCTTTGTCATCGACACCAGCAGGGCTGGGA
ATGGAGATGTCGTCACCATCATTACAAGCCCCAGCGGAAGGAACATCCCT
TGCAGGCTGAGTCATCAGGGGACGCTGTACGATGCTGAATATGTTCCTCT
GGAAGTCGGTGACCACCAGATTGACATCCATTTTGACCAGCAGCCGATCC
CCGGCAGCCCGTTCCACTGCCACGTGTACGACGTGAGCGGGGTCCGCATC
AGAGAGATCCCGCAGGGCAGGGTTGGCAAGACTGTGCAGGTGGAAGTTGA
CACGAGTCTTGCTGGCCGGGGCAGCCTACAGGGAAATGTGAGTGTCCTGA
GGAACCCTGTGGCCAGTAACCTGTCCAGCCTGGACTCCGACCGCTACCTG
ATGACCTTTGTCCCTCAGTCTGTCGACCCTGCTGGTTCAGGCGTTCTTGA
GGCAACGGTCAACTGTCCGACTGACCCTGTCACCAGTCAGATGGACAGCA
TCGGACAGGACCGGTTCAAACTGGTCTTTGTTCCCCGCTGCAACCATCCC
CACGACATTGCATTCAAGTTCAATGGGAATGTTGTACCAGGGAGCCCCTA
CAAGTGTTACATCTCTGATGCCAGCCAGGCGCAGGCTAGAGGAGATGGGC
TGGACCGCGTGCCCATCAAAACTCCCTCCAGCTTTGTCATCGACACCAGC
AGGGCTGGGAATGGAGATGTCGTCACCATCATTACAAGCCCCAGCGGAAG
GAACATCCCTTGCAGGCTGAGTCATCAGGGGACGCTGTACGATGCTGAAT
ATGTTCCTCTGGAAGTCGGTGACCACCAGATTGACATCCATTTTGACCAG
CAGCCGATCCCCGGCAGCCCGTTCCACTGCCACGTGTACGACGTGAGCGG
GGTCCGCATCAGAGAGATCCCGCAGGGCAGGGTTGGCAAGACTGTGCAGG
TGGAAGTTGACACGAGTCTTGCTGGCCGGGGCAGCCTACAGGGAAATGTG
AGTGTCCTGAGGAACCCTGTGGCCAGTAACCTGTCCAGCCTGGACTCCGA
CCGCTACCTGATGACCTTTGTCCCTCAGTCTGTCGACCCTGCTGGTTCAG
GCGTTCTTGAGGCAACGGTCAACTGTCCGACTGACCCTGTCACCAGTCAG
ATGGACAGCATCGGACAGGACCGGTTCAAACTGGTCTTTGTTCCCCGCTG
CAACCATCCCCACGACATTGCATTCAAGTTCAATGGGAATGTTGTACCAG
GGAGCCCCTACAAGTGTTACATCTCTGATGCCAGCCAGGCGCAGGCTAGA
GGAGATGGGCTGGACCGCGTGCCCATCAAAACTCCCTCCAGCTTTGTCAT
CGACACCAGCAGGGCTGGGAATGGAGATGTCGTCACCATCATTACAAGCC
CCAGCGGAAGGAACATCCCTTGCAGGCTGAGTCATCAGGGGACGCTGTAC
GATGCTGAATATGTTCCTCTGGAAGTCGGTGACCACCAGATTGACATCCA
TTTTGACCAGCAGCCGATCCCCGGCAGCCCGTTCCACTGCCACGTGTACG
ACGTGAGCGGGGTCCGCATCAGAGAGATCCCGCAGGGCAGGGTTGGCAAG
ACTGTGCAGGTGGAAGTTGACACGAGTCTTGCTGGCCGGGGCAGCCTACA
GGGAAATGTGAGTGTCCTGAGGAACCCTGTGGCCAGTAACCTGTCCAGCC
TGGACTCCGACCGCTACCTGATGACCTTTGTCCCTCAGTCTGTCGACCCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000071 | genome | Sc0000071:928016..930654 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96795_cuf13 |
| Biotype | protein_coding |
|
