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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96793_cuf17 >transcript:BL96793_cuf17-protein ID=transcript:BL96793_cuf17-protein|Name=transcript:BL96793_cuf17|organism=Branchiostoma lanceolatum|type=polypeptide|length=345bp
MRAITLAVSVAIFLHLLSDERFNVHGGKVLLVPTPVIESYWFEMAKIGQV
LSDRGHDVVVVFPERVLTKRQKDRPDFQFETFQDQGAWARLEELNNLERE
EAGEDGQIFLPRLLQLRQMWGQEMAKHCDLLLRNSTLTDRMKASRYDVIV
TDALFHCGAIVGRHLDVPNVALVAPLEHDTRATGVPFPCSYVPSVFSTFD
DRMPFLQRLENAFVVCKQMAVFWLWARAHDSVTHRYLGKGETALTAMSHT
DVWLYVSDPLLDFPQPSMPNMVNIGGFHVKQPGSLSEELETFMRSSGDDG
VVVVSFGAYRPSRQRSSRRPSPCSRRRCCGGTGEKNRPAWATILN Run BLAST on NCBI mRNA from alignment at Sc0000062:1274692..1279764- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96793_cuf17 ID=transcript:BL96793_cuf17|Name=transcript:BL96793_cuf17|organism=Branchiostoma lanceolatum|type=mRNA|length=5073bp|location=Sequence derived from alignment at Sc0000062:1274692..1279764- (Branchiostoma lanceolatum)
CGGAGATCACCCTAGCCAAATGCCGAATTGCGGACACACACTTCTTTTAT
TACATAGAGGCAGTAATGCCTTCGTATACGGAGTTGAATATAACACAATT
ATGTAATGAGGTAGAAGCATGCTTCAGCTGTACAGCAACTTTTAATGCAT
TGATAAATCCATTCCATTGGACCAAATTTCAACTGCATCGCGGTCGCGTT
AAACAGGTGGTCGTCTTGGGCAAGTCTTCGGTTCCGGAAAAAAAATGGAA
AAAATATTTTAGGGTGGCGACTGTAGTACATGTAATAGGATGGCACCCAG
GTACCGAGGAGAAAAAATGTGGTCGGCTTGAACAGGTCGTCGCTTGGCAG
CATGGGCAGGTATGATTGAAATTTACGTCACCAACCACCGACCTTTGACC
CTATCAGCTGGGAACTGCGAGTCGGTGTCGTGGCGGGGATGCGGGCGATC
ACACTCGCAGTTTCTGTAGCGATTTTTCTGCACCTCCTGTCCGATGAAAG
ATTCAACGTCCACGGTGGAAAGGTACTGCTGGTGCCAACCCCGGTGATAG
AAAGCTACTGGTTCGAAATGGCAAAGATCGGACAAGTCTTGTCGGACAGG
GGGCACGATGTGGTGGTAGTCTTTCCAGAGCGCGTTCTGACAAAACGGCA
AAAGGACAGGCCTGATTTTCAGTTCGAGACATTCCAGGACCAAGGAGCTT
GGGCACGCCTTGAAGAACTTAACAACCTGGAGAGGGAGGAAGCGGGGGAG
GATGGTCAAATCTTCCTCCCCCGGCTGTTACAACTGCGCCAAATGTGGGG
CCAAGAAATGGCAAAACATTGTGACCTGCTGCTGAGAAACAGTACCTTGA
CAGACCGCATGAAGGCGTCGCGGTACGATGTCATCGTAACCGACGCCCTG
TTTCACTGTGGAGCAATAGTCGGCAGACACCTGGACGTCCCTAATGTCGC
GTTGGTGGCACCCTTAGAACACGACACAAGAGCCACGGGGGTTCCCTTCC
CTTGCTCGTACGTACCGTCGGTGTTTTCTACCTTCGATGATCGCATGCCT
TTTCTACAACGGTTAGAGAACGCTTTCGTCGTCTGTAAACAAATGGCAGT
GTTCTGGCTGTGGGCAAGGGCACACGACAGTGTTACCCACAGGTACCTCG
GCAAGGGGGAGACAGCCCTGACCGCGATGTCTCACACCGACGTTTGGCTA
TACGTGTCCGATCCTTTGTTGGATTTTCCCCAGCCGTCCATGCCAAATAT
GGTGAATATTGGAGGATTCCATGTAAAGCAGCCTGGGAGTCTTTCAGAGG
TATCATAACCCTAAAGATGATCAAGGATGTATGATCGTTTGTCTCTAATA
TTTGAGATATTCTAGATATAAGATATATTGATGTAATTCACATTTTCTAC
TTCTTTTCAACATACTTGTGTCGTTATTTAAAATTTCTAACGTTTAATTT
CTAAAATGTCTAAGATCGTCTAACGCACAAACAGTCCGCTTGAGGCGCAC
TCACTTCGCGAAACCATTTCGAAGTGGACACGCCTAGAATCAAAATCCTT
GCTGGCTGGAGGTGGCAGTGTCATTTATTATGCCATGCTGATATTTTTTA
AAATCTTTTTTATTTGATTGTATGGATGAAATCCGCTCGCGCATCAATTT
TCGTCCAAGAATAGAAAAAAAAAAGTTTTCGGTCATACCGCAAATCGCAA
AAAGCAGCTGCAAAATAAGGAAATCATGCTCTAAATTACCAAAAGATACT
TCAGAAAATGGATGCCATTAAAGAATGCCAAAGTCAAAGAAGTTTTGAAA
GAACTCAAATAAAAAATCTATATTTCGGTATACCATAGTCTGTGTGTTTA
GTTTTGTCCGTCCTTCCTGCTGACCATGTAGGTTTCATTATGAAGGCAAC
TTTTATTTTGCCAATTTTTTGTTTTTATTCGCACGTTTGCATCAATTTTT
GGGTCGCCAGAGGATGTCGTTTATATTAGCAAATCAATATAGCCTTATGC
CAAGGTCATATATTTGTTTATAGATAGATGTTAGAAAGCTTGTGCTGAAA
GGGACCATGGTCCCCGACCCTCAAGATGAGGATGGGACTAGGTGAGGTGA
GGTTAGAAATTAAAATATTTAATCAACCCGATGGTTCTGACAGCTCTCTC
GTTGTCCCTTTCCTCGCAGGAGTTGGAGACGTTCATGCGAAGTTCCGGAG
ACGATGGAGTTGTTGTGGTCAGCTTCGGGGCGTACCGACCCAGCAGGCAG
AGGTCCTCGCGACGGCCTTCGCCATGCTCCCGCAGAAGGTGTTGTGGCGG
CACGGGGGAGAAAAACCGGCCAGCCTGGGCAACAATACTAAACTAATGAA
TTGGCTGCCACAAAATGACCTCCTAGGTTAGCTTGTTACCTCCATGAAAA
TTGGAGGTATGGTTTCTGGCATGTTACGTATGTGATGTGTTTGCTTGCTT
GTTTGTGTTTCCAGATAATTATGGTCAGCACAACTTAAGAGCGGCTGGGT
GGGTTGTGATTATATTGTGTAGGTGGATATGCCTTGAGAAGACGAAAGTC
AATGCCAAATTTGGGCCCCCATGTGCGACCATGCTACTGCAACATAACTT
TCGAATTTTGTATCTTTTATCCTGAACATGCTATGGTCTTGATTTTCTGG
TGTACAAAGCGACGTCCTTTCGCCAAATCGTCGGGATATTTAAATGTTGA
CATATTCTGACAGCCTGTTTTATAAGTACTTCCCCGTGAAGTAAGTTCCC
GGCTTGGGCTAATTGACCTTACCCTGGGAGACCAGACACCGTATATCGGC
GCGCTACCGAGCGCCGCACGCGCGCCCAAGCTTTCCCGGCCCACCCTCCC
GCTGCCCCTGAAGACCGACCCCACTCCAATCTCCGCTGTAAACCCAAGCT
CCGCTAGCCGAATATGGAGGGTGGGCCGGGAAAGCTTGGGTGCGCGTGCG
GCGCTCGGTAGCGCGCCGATATACGGTGTCTGGTCTCCCAGGGTAAATTG
ATCTGGGAGAACGGGCAACTCCTGCCAGTACCGTAGAGGTACCGAGGACC
TCCCGATGGGATGGTTACCAGGCTAACTTTTTTACTTCAAGTTTTTCATA
ACTTATTTCTAACAGTGCCACGTACAGAGAACAATATACCCATTTCTACA
CCTTGGTGGAATGAAGAAAGTCGTGTCAAGTGCCTTTCTCAAGAGCACAC
TATAGGTGGCGTCAGGGGATTCGAACCCGGGACTGCTGTGTTCTGGGCCG
AACACCCTGCCGCTGCGCCGCGACCCCACAACAGGCTTACTGGTCATTTA
CTTATCCCGCAGGCCACGAGAAGACCCGACTTTTCGTCACACACGCGGGG
AGAAGTAGCGTGTACGAGGCCTTGCACCACGGAGTACCCGTGGTCTGCCT
ACCGACGTGTCTGGATCAGCCCGCCAACGCCGCACGGCTTGTCGCCAGAG
GCGCGGGGATAAGTCTAAACTACCGCACGGTCACAGTCGAGGAGCTGTAT
CAGGCCATCGCCACGGTCATCACCGACGAAAGGTGAGCTACTTTTCCGTG
TGCTTGGATGTAGCTTTTACTCGTCTTATTTCTGGTGAGAATTCCGATTT
TGGTTCACATAGAAATGCGTGTCGATGTCGTGACTGGCAGTCGGTGCGAG
TTGCCGGTTGCAGTTCCGTTGACCTCCCCTGGACGCATATAAAACCAATA
AATCTTTTGTCTTCAATTGTTTTAATTATCCGCGTCTTCAATTGTTCTAA
TCAACCTAAGCTCCAACGTATTCGTTTGCGCTACTTCTCTTTGAACTCTA
CTGTAATTTCACGGATCAACCGCGTCGATGTATGTCTGTCACTTTATGAT
CCTTAACCATGTAAATCATCACAGGCGAAATACTGTGTTCTGCTACCATA
ATAGCGCGTGGTTATGCCTGAGCTAACAATGTGGATCGCCGTCTTGGATT
TTGACCAATGTCATCAAATTAGCATAAATTACTAGTATTAATTATGAAAC
ATAATACATAATGTAGTTGCATTAAATTATAATACATGCTATCAACAATG
TAAGAAGACAAGTGTAATATGACAAGAACCCGTTGCTATAGCAACACAAA
AATGATTAACTTGATTCATTATGATTGTTGCCAGATAAAGTTAATTGGAA
AAGTCACCAAGTTTTATGGTTCTAGCTTACTAGTCACTCAGACGTTATGT
GACATGAAAGTTGTAACGGGGAAAGTTGAGGTGTTGTCGGATCGGATCAC
CCCTGAATACAAGTATAGCTGAACATGGAACGTACCTCAGGACCCACCAC
ACATGTACACTGTATCATGCCAATGTGGTGTGCAATTGTCTTGTTGTATT
TGCAATTTTTAGAAAATGGAAGGATATGACTTTTATTGAGAGTCTTTCCT
CCGTAGGTACCGAGCAGCTGCAGCACGCCTGTCCAGCCTGCACCGTGACC
AGCCCCAGCCGCCCATGGGAAGAGCAGTCTGGTGGATAGAACACGTCATC
AAACATGGCGGACTGCCCCATCTCCGCGCACGCGCCGTGGAGCTGCCGTG
GTACCAGTACTACCTGCTGGACGTGGCTGCGTTCCTCGTGGCCGTGTGTT
CAGTCGCCATGGGGGTCGTTTGGTTCAGCTGCTTGCTATGTTGTAGGAAA
TGTCGGCGTGTGGGGAAAATAAAATCTCAATGAACAGATATAGACGGACA
AAATGAATAAATACGGCTGGATTCTGAACATCAAACGACTGTGTTGTCTT
ATTAGGGTGGGTGGAGAGTGCTGTACTGCTCTGTATTTAACCCTCAACAG
TGTTAGTGTACCTTCCCGGACAGACCAATTTGTCAACGTGGACCCCAACA
CAGTTTTTCAAACTTTCCAGACGTTTTCAGCATATCTAATTAACTGTCTC
AAATATCTTGGAATGATGAGTGAACTTCCAATTGCACATTGATGAAAAAA
CAAAAATTTTCCGTGTTTTTTTGTTTCTTTTTTCTGAAGAAAAAGAGAAA
ATTACATTTTAAAAACTTGTTGAATTAAAAAAATCATTTTGTGTCATTTG
ATTTCCAAAAGCTTCTGTTGTCT Coding sequence (CDS) from alignment at Sc0000062:1274692..1279764- >transcript:BL96793_cuf17 ID=transcript:BL96793_cuf17|Name=transcript:BL96793_cuf17|organism=Branchiostoma lanceolatum|type=CDS|length=2076bp|location=Sequence derived from alignment at Sc0000062:1274692..1279764- (Branchiostoma lanceolatum)
ATGCGGGCGATCACACTCGCAGTTTCTGTAGCGATTTTTCTGCACCTCCT
GTCCGATGAAAGATTCAACGTCCACGGTGGAAAGGTACTGCTGGTGCCAA
CCCCGGTGATAGAAAGCTACTGGTTCGAAATGGCAAAGATCGGACAAGTC
TTGTCGGACAGGGGGCACGATGTGGTGGTAGTCTTTCCAGAGCGCGTTCT
GACAAAACGGCAAAAGGACAGGCCTGATTTTCAGTTCGAGACATTCCAGG
ACCAAGGAGCTTGGGCACGCCTTGAAGAACTTAACAACCTGGAGAGGGAG
GAAGCGGGGGAGGATGGTCAAATCTTCCTCCCCCGGCTGTTACAACTGCG
CCAAATGTGGGGCCAAGAAATGGCAAAACATTGTGACCTGCTGCTGAGAA
ACAGTACCTTGACAGACCGCATGAAGGCGTCGCGGTACGATGTCATCGTA
ACCGACGCCCTGTTTCACTGTGGAGCAATAGTCGGCAGACACCTGGACGT
CCCTAATGTCGCGTTGGTGGCACCCTTAGAACACGACACAAGAGCCACGG
GGGTTCCCTTCCCTTGCTCGTACGTACCGTCGGTGTTTTCTACCTTCGAT
GATCGCATGCCTTTTCTACAACGGTTAGAGAACGCTTTCGTCGTCTGTAA
ACAAATGGCAGTGTTCTGGCTGTGGGCAAGGGCACACGACAGTGTTACCC
ACAGGTACCTCGGCAAGGGGGAGACAGCCCTGACCGCGATGTCTCACACC
GACGTTTGGCTATACGTGTCCGATCCTTTGTTGGATTTTCCCCAGCCGTC
CATGCCAAATATGGTGAATATTGGAGGATTCCATGTAAAGCAGCCTGGGA
GTCTTTCAGAGGAGTTGGAGACGTTCATGCGAAGTTCCGGAGACGATGGA
GTTGTTGTGGTCAGCTTCGGGGCGTACCGACCCAGCAGGCAGAGGTCCTC
GCGACGGCCTTCGCCATGCTCCCGCAGAAGGTGTTGTGGCGGCACGGGGG
AGAAAAACCGGCCAGCCTGGGCAACAATACTAAACTAAATGCGGGCGATC
ACACTCGCAGTTTCTGTAGCGATTTTTCTGCACCTCCTGTCCGATGAAAG
ATTCAACGTCCACGGTGGAAAGGTACTGCTGGTGCCAACCCCGGTGATAG
AAAGCTACTGGTTCGAAATGGCAAAGATCGGACAAGTCTTGTCGGACAGG
GGGCACGATGTGGTGGTAGTCTTTCCAGAGCGCGTTCTGACAAAACGGCA
AAAGGACAGGCCTGATTTTCAGTTCGAGACATTCCAGGACCAAGGAGCTT
GGGCACGCCTTGAAGAACTTAACAACCTGGAGAGGGAGGAAGCGGGGGAG
GATGGTCAAATCTTCCTCCCCCGGCTGTTACAACTGCGCCAAATGTGGGG
CCAAGAAATGGCAAAACATTGTGACCTGCTGCTGAGAAACAGTACCTTGA
CAGACCGCATGAAGGCGTCGCGGTACGATGTCATCGTAACCGACGCCCTG
TTTCACTGTGGAGCAATAGTCGGCAGACACCTGGACGTCCCTAATGTCGC
GTTGGTGGCACCCTTAGAACACGACACAAGAGCCACGGGGGTTCCCTTCC
CTTGCTCGTACGTACCGTCGGTGTTTTCTACCTTCGATGATCGCATGCCT
TTTCTACAACGGTTAGAGAACGCTTTCGTCGTCTGTAAACAAATGGCAGT
GTTCTGGCTGTGGGCAAGGGCACACGACAGTGTTACCCACAGGTACCTCG
GCAAGGGGGAGACAGCCCTGACCGCGATGTCTCACACCGACGTTTGGCTA
TACGTGTCCGATCCTTTGTTGGATTTTCCCCAGCCGTCCATGCCAAATAT
GGTGAATATTGGAGGATTCCATGTAAAGCAGCCTGGGAGTCTTTCAGAGG
AGTTGGAGACGTTCATGCGAAGTTCCGGAGACGATGGAGTTGTTGTGGTC
AGCTTCGGGGCGTACCGACCCAGCAGGCAGAGGTCCTCGCGACGGCCTTC
GCCATGCTCCCGCAGAAGGTGTTGTGGCGGCACGGGGGAGAAAAACCGGC
CAGCCTGGGCAACAATACTAAACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000062 | genome | Sc0000062:1274692..1279764 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96793_cuf17 |
| Biotype | protein_coding |
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