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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96791_cuf9 >transcript:BL96791_cuf9-protein ID=transcript:BL96791_cuf9-protein|Name=transcript:BL96791_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=877bp
PMHDKGHDVYSCGGINEWEMQLFEAYMFALDRINADPSILPSVRLGSLAL
DTCESARKASRDIANFLSGEKTYYVTEYSSTFVEPASTLAVIGASVGDVS
LNAMEVVETFKMAQVSYASPEIPMATRENYGYFLRTIPALERQVQALMDM
ASYFKWKYVSVLYTPTVYGTVLFESFKEEAKTRGICLAVQKEIRNNFTQT
SYDDVIVELRRKGEASTVILFTERAETENVLLAAQRVNVRSFYTWIVTTK
VASDVDVPLAQDPVINGAVLLKVETQEVPEFDTYLETLTPETNQRNPWFK
EFWQEHFQCNLPNEPVKYPVVCSGSERLTESSLTRNPAIVHVIRAVYAVA
HGLDTTRKFYCPTEPEVCDNFRNANDKPERAFGFVRDVDLIGIAGSRFRF
TTTGDGDVGYEILNYEITAPPSRYGYVKIGTWSDGLFLERSPQSTSTDNV
KYPASECTGECAECVQQGILPAPPQERRIDVPTQVRTRDVWAIICMTLAA
LGMFLTLMLMIYFLVKVRSSSLSGVTTSTSLGYLILFGLFAMYAMVLPFV
MTPNDVVCGVRRFGLGFFYAMTHGAILVKTIRIWRMSRMEKAGMPGEEAK
FTRNWSNVFIVCTLLLPQVAIGVSWLLASPPATYSLGSTIYCGYSRAGLL
FSLLYVMFLVFLTVIYSFVARNYSMNMWEARYIIAMTWLCVCVWISWACV
YMLTDRDFWDPAVCVGLLLIATFILILLFVPKLQAFATYHHSFTSRYDIN
KRPNSIQRSDVETDSLGSLDSIYGVASLQDSAVTADAFYRSKTSNGKLSR
SVSNTSNHAGASNLYVYDGRRGRILSARRKFVRNPRYLHGHQRRDRVNLA
LNWLTLPPKSDRRSRSNSDQRFHTMYF Run BLAST on NCBI mRNA from alignment at Sc0000211:219167..222121+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96791_cuf9 ID=transcript:BL96791_cuf9|Name=transcript:BL96791_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=2955bp|location=Sequence derived from alignment at Sc0000211:219167..222121+ (Branchiostoma lanceolatum)
TCCAATGCACGATAAAGGCCACGACGTTTACTCCTGTGGAGGCATCAACG
AGTGGGAGATGCAGCTGTTCGAGGCCTACATGTTCGCGCTGGACCGCATC
AACGCCGACCCCTCCATCCTGCCGTCCGTGCGCCTCGGCTCGCTCGCCTT
AGACACCTGCGAGAGCGCTAGGAAGGCGTCGCGAGACATCGCCAACTTCC
TCAGCGGCGAGAAGACGTACTACGTCACCGAGTATTCGAGCACGTTCGTC
GAACCGGCATCAACTCTTGCCGTTATCGGAGCCTCGGTGGGAGATGTGTC
ACTGAACGCCATGGAAGTCGTCGAGACATTCAAGATGGCGCAGGTTTCCT
ACGCGTCACCGGAAATCCCCATGGCAACGAGAGAGAATTATGGGTATTTC
CTCAGGACGATCCCAGCGCTGGAGAGGCAGGTGCAGGCCCTGATGGACAT
GGCGTCGTACTTCAAGTGGAAATACGTCTCGGTGTTGTACACGCCAACAG
TGTACGGGACGGTGCTTTTCGAGAGTTTTAAAGAGGAAGCCAAGACGCGA
GGAATCTGTTTGGCCGTGCAGAAGGAAATCCGCAACAACTTCACCCAGAC
GAGTTACGATGATGTTATTGTGGAACTGAGGAGAAAGGGCGAGGCTTCAA
CCGTCATACTCTTCACAGAGAGGGCGGAGACAGAGAACGTTCTTCTGGCG
GCGCAGCGCGTAAACGTTCGCTCGTTCTATACCTGGATCGTCACCACCAA
GGTAGCCAGCGACGTCGACGTTCCACTCGCGCAAGACCCCGTTATCAACG
GCGCCGTTCTCCTTAAGGTTGAAACGCAGGAAGTACCCGAGTTCGACACC
TACCTCGAGACGCTAACCCCGGAGACCAACCAAAGAAACCCGTGGTTTAA
AGAGTTTTGGCAGGAACATTTTCAGTGTAACTTGCCGAACGAGCCCGTTA
AGTACCCAGTGGTGTGTTCTGGTAGCGAGAGACTAACTGAGAGTAGTTTA
ACGCGCAACCCTGCAATAGTTCACGTCATAAGGGCGGTGTACGCAGTGGC
TCACGGACTCGACACGACGCGGAAGTTCTACTGTCCGACAGAGCCGGAGG
TGTGCGACAACTTTCGGAACGCCAACGATAAGCCGGAGAGAGCGTTCGGC
TTCGTTCGGGACGTAGACTTGATTGGCATTGCTGGAAGTCGCTTTCGTTT
CACAACGACTGGAGACGGGGACGTTGGATACGAGATTCTGAATTATGAAA
TCACGGCTCCACCAAGCAGATACGGATATGTAAAGGTGGGTGTATAAAAC
ATGACATAATGTGAAGAACCGCATGAATTCGAGCTATATGCTGCATATCT
TTTATCTGTGAAAATGTATCGGTGCATGCCATCCTCGTAGTGCTTTTGTT
AGGTAGCCTTTCTAGCATTTCATCCAGTGATACGGCGATGTTCTATCTCA
ATAATCTTTGGAATCATTACCTCCGTGAAAACGGAATTGCACAGTGGCAA
GATATAACAGGCGGAAGTGGTGTAATAGGATACTTGTTGACTCCACATTC
CTCTTGCAGATCGGCACGTGGAGCGACGGGTTGTTCCTGGAGCGCAGTCC
CCAGAGCACCAGTACGGATAACGTGAAGTACCCGGCCTCGGAGTGTACCG
GGGAGTGTGCGGAGTGCGTTCAGCAGGGCATCCTGCCCGCCCCGCCACAG
GAACGGCGCATCGACGTCCCGACGCAGGTCCGGACCAGAGACGTCTGGGC
GATCATCTGTATGACGCTCGCGGCCCTGGGAATGTTCTTAACCCTCATGT
TGATGATCTATTTCCTTGTTAAAGTCCGCTCCTCCTCTCTGTCGGGTGTC
ACTACCTCCACCTCTCTCGGCTATCTCATACTCTTTGGTCTCTTCGCCAT
GTACGCTATGGTCCTGCCGTTCGTCATGACGCCGAACGACGTGGTGTGCG
GCGTGCGTCGCTTCGGCTTGGGGTTCTTCTACGCGATGACGCACGGCGCC
ATCCTGGTCAAGACCATCCGCATCTGGCGCATGTCCCGGATGGAGAAGGC
CGGCATGCCCGGCGAGGAGGCCAAGTTCACCCGCAACTGGAGCAACGTCT
TCATCGTCTGCACCCTGCTGCTGCCGCAAGTCGCCATCGGAGTCAGCTGG
CTGCTGGCGAGCCCGCCCGCCACGTACTCCCTCGGCTCCACCATCTACTG
CGGGTACAGCAGAGCCGGCCTGCTGTTCTCCCTGCTGTATGTCATGTTCC
TGGTGTTCCTTACCGTCATCTACAGCTTCGTGGCGAGGAATTACAGCATG
AACATGTGGGAGGCTCGCTACATCATCGCCATGACCTGGCTGTGCGTGTG
CGTGTGGATCTCGTGGGCATGCGTCTACATGCTGACCGACAGAGACTTCT
GGGATCCAGCCGTGTGCGTCGGCCTCCTCCTCATCGCCACGTTCATTCTC
ATCCTCCTGTTCGTCCCGAAGCTGCAGGCATTCGCCACGTACCACCACAG
CTTTACCTCGCGGTACGACATCAACAAGAGGCCCAACTCTATACAGCGTT
CAGACGTCGAAACAGACTCCTTGGGCTCGCTGGACAGTATCTACGGCGTT
GCGAGCCTACAGGACAGTGCGGTGACCGCCGACGCCTTCTACCGCTCCAA
GACGTCCAACGGAAAGCTGTCGAGGAGCGTGTCGAACACCAGCAACCATG
CGGGGGCCAGTAACCTGTATGTCTACGACGGACGACGAGGTAGAATTTTA
AGTGCCCGTCGGAAATTTGTGCGTAACCCTAGGTATCTCCACGGCCATCA
GCGACGCGATCGTGTAAATCTTGCCCTCAATTGGCTGACGTTGCCTCCTA
AGTCAGACCGTAGGTCGCGCTCAAATTCGGATCAACGGTTTCATACCATG
TATTTCTAAAAGACTTCTAAAAGAACTACAGTGAAATGAGTGCCATGAAA
TCTTG Coding sequence (CDS) from alignment at Sc0000211:219167..222121+ >transcript:BL96791_cuf9 ID=transcript:BL96791_cuf9|Name=transcript:BL96791_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=5268bp|location=Sequence derived from alignment at Sc0000211:219167..222121+ (Branchiostoma lanceolatum)
CCAATGCACGATAAAGGCCACGACGTTTACTCCTGTGGAGGCATCAACGA
GTGGGAGATGCAGCTGTTCGAGGCCTACATGTTCGCGCTGGACCGCATCA
ACGCCGACCCCTCCATCCTGCCGTCCGTGCGCCTCGGCTCGCTCGCCTTA
GACACCTGCGAGAGCGCTAGGAAGGCGTCGCGAGACATCGCCAACTTCCT
CAGCGGCGAGAAGACGTACTACGTCACCGAGTATTCGAGCACGTTCGTCG
AACCGGCATCAACTCTTGCCGTTATCGGAGCCTCGGTGGGAGATGTGTCA
CTGAACGCCATGGAAGTCGTCGAGACATTCAAGATGGCGCAGGTTTCCTA
CGCGTCACCGGAAATCCCCATGGCAACGAGAGAGAATTATGGGTATTTCC
TCAGGACGATCCCAGCGCTGGAGAGGCAGGTGCAGGCCCTGATGGACATG
GCGTCGTACTTCAAGTGGAAATACGTCTCGGTGTTGTACACGCCAACAGT
GTACGGGACGGTGCTTTTCGAGAGTTTTAAAGAGGAAGCCAAGACGCGAG
GAATCTGTTTGGCCGTGCAGAAGGAAATCCGCAACAACTTCACCCAGACG
AGTTACGATGATGTTATTGTGGAACTGAGGAGAAAGGGCGAGGCTTCAAC
CGTCATACTCTTCACAGAGAGGGCGGAGACAGAGAACGTTCTTCTGGCGG
CGCAGCGCGTAAACGTTCGCTCGTTCTATACCTGGATCGTCACCACCAAG
GTAGCCAGCGACGTCGACGTTCCACTCGCGCAAGACCCCGTTATCAACGG
CGCCGTTCTCCTTAAGGTTGAAACGCAGGAAGTACCCGAGTTCGACACCT
ACCTCGAGACGCTAACCCCGGAGACCAACCAAAGAAACCCGTGGTTTAAA
GAGTTTTGGCAGGAACATTTTCAGTGTAACTTGCCGAACGAGCCCGTTAA
GTACCCAGTGGTGTGTTCTGGTAGCGAGAGACTAACTGAGAGTAGTTTAA
CGCGCAACCCTGCAATAGTTCACGTCATAAGGGCGGTGTACGCAGTGGCT
CACGGACTCGACACGACGCGGAAGTTCTACTGTCCGACAGAGCCGGAGGT
GTGCGACAACTTTCGGAACGCCAACGATAAGCCGGAGAGAGCGTTCGGCT
TCGTTCGGGACGTAGACTTGATTGGCATTGCTGGAAGTCGCTTTCGTTTC
ACAACGACTGGAGACGGGGACGTTGGATACGAGATTCTGAATTATGAAAT
CACGGCTCCACCAAGCAGATACGGATATGTAAAGATCGGCACGTGGAGCG
ACGGGTTGTTCCTGGAGCGCAGTCCCCAGAGCACCAGTACGGATAACGTG
AAGTACCCGGCCTCGGAGTGTACCGGGGAGTGTGCGGAGTGCGTTCAGCA
GGGCATCCTGCCCGCCCCGCCACAGGAACGGCGCATCGACGTCCCGACGC
AGGTCCGGACCAGAGACGTCTGGGCGATCATCTGTATGACGCTCGCGGCC
CTGGGAATGTTCTTAACCCTCATGTTGATGATCTATTTCCTTGTTAAAGT
CCGCTCCTCCTCTCTGTCGGGTGTCACTACCTCCACCTCTCTCGGCTATC
TCATACTCTTTGGTCTCTTCGCCATGTACGCTATGGTCCTGCCGTTCGTC
ATGACGCCGAACGACGTGGTGTGCGGCGTGCGTCGCTTCGGCTTGGGGTT
CTTCTACGCGATGACGCACGGCGCCATCCTGGTCAAGACCATCCGCATCT
GGCGCATGTCCCGGATGGAGAAGGCCGGCATGCCCGGCGAGGAGGCCAAG
TTCACCCGCAACTGGAGCAACGTCTTCATCGTCTGCACCCTGCTGCTGCC
GCAAGTCGCCATCGGAGTCAGCTGGCTGCTGGCGAGCCCGCCCGCCACGT
ACTCCCTCGGCTCCACCATCTACTGCGGGTACAGCAGAGCCGGCCTGCTG
TTCTCCCTGCTGTATGTCATGTTCCTGGTGTTCCTTACCGTCATCTACAG
CTTCGTGGCGAGGAATTACAGCATGAACATGTGGGAGGCTCGCTACATCA
TCGCCATGACCTGGCTGTGCGTGTGCGTGTGGATCTCGTGGGCATGCGTC
TACATGCTGACCGACAGAGACTTCTGGGATCCAGCCGTGTGCGTCGGCCT
CCTCCTCATCGCCACGTTCATTCTCATCCTCCTGTTCGTCCCGAAGCTGC
AGGCATTCGCCACGTACCACCACAGCTTTACCTCGCGGTACGACATCAAC
AAGAGGCCCAACTCTATACAGCGTTCAGACGTCGAAACAGACTCCTTGGG
CTCGCTGGACAGTATCTACGGCGTTGCGAGCCTACAGGACAGTGCGGTGA
CCGCCGACGCCTTCTACCGCTCCAAGACGTCCAACGGAAAGCTGTCGAGG
AGCGTGTCGAACACCAGCAACCATGCGGGGGCCAGTAACCTGTATGTCTA
CGACGGACGACGAGGTAGAATTTTAAGTGCCCGTCGGAAATTTGTGCGTA
ACCCTAGGTATCTCCACGGCCATCAGCGACGCGATCGTGTAAATCTTGCC
CTCAATTGGCTGACGTTGCCTCCTAAGTCAGACCGTAGGTCGCGCTCAAA
TTCGGATCAACGGTTTCATACCATGTATTTCTAACCAATGCACGATAAAG
GCCACGACGTTTACTCCTGTGGAGGCATCAACGAGTGGGAGATGCAGCTG
TTCGAGGCCTACATGTTCGCGCTGGACCGCATCAACGCCGACCCCTCCAT
CCTGCCGTCCGTGCGCCTCGGCTCGCTCGCCTTAGACACCTGCGAGAGCG
CTAGGAAGGCGTCGCGAGACATCGCCAACTTCCTCAGCGGCGAGAAGACG
TACTACGTCACCGAGTATTCGAGCACGTTCGTCGAACCGGCATCAACTCT
TGCCGTTATCGGAGCCTCGGTGGGAGATGTGTCACTGAACGCCATGGAAG
TCGTCGAGACATTCAAGATGGCGCAGGTTTCCTACGCGTCACCGGAAATC
CCCATGGCAACGAGAGAGAATTATGGGTATTTCCTCAGGACGATCCCAGC
GCTGGAGAGGCAGGTGCAGGCCCTGATGGACATGGCGTCGTACTTCAAGT
GGAAATACGTCTCGGTGTTGTACACGCCAACAGTGTACGGGACGGTGCTT
TTCGAGAGTTTTAAAGAGGAAGCCAAGACGCGAGGAATCTGTTTGGCCGT
GCAGAAGGAAATCCGCAACAACTTCACCCAGACGAGTTACGATGATGTTA
TTGTGGAACTGAGGAGAAAGGGCGAGGCTTCAACCGTCATACTCTTCACA
GAGAGGGCGGAGACAGAGAACGTTCTTCTGGCGGCGCAGCGCGTAAACGT
TCGCTCGTTCTATACCTGGATCGTCACCACCAAGGTAGCCAGCGACGTCG
ACGTTCCACTCGCGCAAGACCCCGTTATCAACGGCGCCGTTCTCCTTAAG
GTTGAAACGCAGGAAGTACCCGAGTTCGACACCTACCTCGAGACGCTAAC
CCCGGAGACCAACCAAAGAAACCCGTGGTTTAAAGAGTTTTGGCAGGAAC
ATTTTCAGTGTAACTTGCCGAACGAGCCCGTTAAGTACCCAGTGGTGTGT
TCTGGTAGCGAGAGACTAACTGAGAGTAGTTTAACGCGCAACCCTGCAAT
AGTTCACGTCATAAGGGCGGTGTACGCAGTGGCTCACGGACTCGACACGA
CGCGGAAGTTCTACTGTCCGACAGAGCCGGAGGTGTGCGACAACTTTCGG
AACGCCAACGATAAGCCGGAGAGAGCGTTCGGCTTCGTTCGGGACGTAGA
CTTGATTGGCATTGCTGGAAGTCGCTTTCGTTTCACAACGACTGGAGACG
GGGACGTTGGATACGAGATTCTGAATTATGAAATCACGGCTCCACCAAGC
AGATACGGATATGTAAAGATCGGCACGTGGAGCGACGGGTTGTTCCTGGA
GCGCAGTCCCCAGAGCACCAGTACGGATAACGTGAAGTACCCGGCCTCGG
AGTGTACCGGGGAGTGTGCGGAGTGCGTTCAGCAGGGCATCCTGCCCGCC
CCGCCACAGGAACGGCGCATCGACGTCCCGACGCAGGTCCGGACCAGAGA
CGTCTGGGCGATCATCTGTATGACGCTCGCGGCCCTGGGAATGTTCTTAA
CCCTCATGTTGATGATCTATTTCCTTGTTAAAGTCCGCTCCTCCTCTCTG
TCGGGTGTCACTACCTCCACCTCTCTCGGCTATCTCATACTCTTTGGTCT
CTTCGCCATGTACGCTATGGTCCTGCCGTTCGTCATGACGCCGAACGACG
TGGTGTGCGGCGTGCGTCGCTTCGGCTTGGGGTTCTTCTACGCGATGACG
CACGGCGCCATCCTGGTCAAGACCATCCGCATCTGGCGCATGTCCCGGAT
GGAGAAGGCCGGCATGCCCGGCGAGGAGGCCAAGTTCACCCGCAACTGGA
GCAACGTCTTCATCGTCTGCACCCTGCTGCTGCCGCAAGTCGCCATCGGA
GTCAGCTGGCTGCTGGCGAGCCCGCCCGCCACGTACTCCCTCGGCTCCAC
CATCTACTGCGGGTACAGCAGAGCCGGCCTGCTGTTCTCCCTGCTGTATG
TCATGTTCCTGGTGTTCCTTACCGTCATCTACAGCTTCGTGGCGAGGAAT
TACAGCATGAACATGTGGGAGGCTCGCTACATCATCGCCATGACCTGGCT
GTGCGTGTGCGTGTGGATCTCGTGGGCATGCGTCTACATGCTGACCGACA
GAGACTTCTGGGATCCAGCCGTGTGCGTCGGCCTCCTCCTCATCGCCACG
TTCATTCTCATCCTCCTGTTCGTCCCGAAGCTGCAGGCATTCGCCACGTA
CCACCACAGCTTTACCTCGCGGTACGACATCAACAAGAGGCCCAACTCTA
TACAGCGTTCAGACGTCGAAACAGACTCCTTGGGCTCGCTGGACAGTATC
TACGGCGTTGCGAGCCTACAGGACAGTGCGGTGACCGCCGACGCCTTCTA
CCGCTCCAAGACGTCCAACGGAAAGCTGTCGAGGAGCGTGTCGAACACCA
GCAACCATGCGGGGGCCAGTAACCTGTATGTCTACGACGGACGACGAGGT
AGAATTTTAAGTGCCCGTCGGAAATTTGTGCGTAACCCTAGGTATCTCCA
CGGCCATCAGCGACGCGATCGTGTAAATCTTGCCCTCAATTGGCTGACGT
TGCCTCCTAAGTCAGACCGTAGGTCGCGCTCAAATTCGGATCAACGGTTT
CATACCATGTATTTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000211 | genome | Sc0000211:219167..222121 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96791_cuf9 |
| Biotype | protein_coding |
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