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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96782_cuf2 >transcript:BL96782_cuf2-protein ID=transcript:BL96782_cuf2-protein|Name=transcript:BL96782_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=436bp
MVLLLALYTYLLLIIEEKYEERQKMMIAIRNMADASILNNQRTLPMDEHK
EGQTVGRAQRDAFTHQPTGDSSGLRLVNSISGRSDWAAKRSQTAVMEWQT
PTCEPKQNVAFIKVHKAGSTTVQSVFLRYGYSHNLTVMLPGGKNPASFSW
PNFPTPGDAYPVSGGVYNILTHHARYHPETIRARMPPDTARVAIMRHPLD
HLKSMFNFIHLNTKYKLDPLNPIQMFLENVTDYAEIDSKFYDGRSPTRNF
QSYVLGFDQRKDFGDEEVEQHFREIKTDVPFVMILEHLDESLIVIKRSMC
WVMKDILYDWTARNYRRFYYKSSSLSHLAMENHRKRSSIDYALYEHYNRT
LWEEVEKGGEDFALELEHFRTMNSNVNEHCRIDPKGSKSFPATRWSMAWT
VDANFCKQLRQERFIWDWKLSMRQNEKIRREKLDTL Run BLAST on NCBI mRNA from alignment at Sc0000201:208267..211903- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96782_cuf2 ID=transcript:BL96782_cuf2|Name=transcript:BL96782_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3637bp|location=Sequence derived from alignment at Sc0000201:208267..211903- (Branchiostoma lanceolatum)
CAAGAACAGTACATGAACGTCACTAAAAGTGCGGTCATTTATTTGGAGGG
GGTTAAGAAGGACAGAAAGTACGGATTTGGGGGAGGGCCGACGCCGTAAA
TAATGGATCATGAACACATTTTCGATCGTAGTATTAAAACCATGCCCGAG
GGCTAATTGCAAGGGAACACACAGACACGATTTTTTTAGATAATATAAGT
GGATGCAACCTGTTTGGGACTGTCGTATAGTACATTTGTATACAGTAACG
CGTTATACCTCGATAAGAAACAACGTCATATGCACTGCCAGAGAACTGGA
GGCCACGCTAGCTACAAACTAATCTGCATATTGAGGTGACCCTCCCCCTG
TATTTCTTGTTTGGCAAGTTTTAAACTGTGGTGTGTTGGCGGCAGACATG
TTTCGGGGGCTACCATAGGGATTTCGGCAAAAAGACTTTACAAGCACTGG
CTTCTGTACATCATATAGTCTTGGCAGGTGGTTCTTCGAATTTCGTTCAT
TGCTAAAACATGTTTGTACCCTCCACTTCTGTGCGAATTTGAAATTACTG
GAAGAGAGCACGGCAGTTGCAATACCTGCCACATTACCCTATAGAACCTT
CTTACAGCAACGGCTGCCCTGAACAAATCAAAGCTTCGCGATTTGAAGGT
TTGGTATCTTACACCACGTCTTGGTCCTGAGCGAGCAATGAGGAGGCTGA
ACTGGTACAACTGTGTCCGACTCCTTTACAGGATCAAGGACAGCCTTGCC
TCTGTAAGTAATGGGCGTACTTACTAGTAGTATTAGAATTTCAACAGTGG
TACAAAAATGGATTGAAATGCCACAAGGGCTGTAGAATGACTCGTTGACG
TGGTTTTGTGTGGTGATTCTGTTTGATACTAAAACGTTTAATACATTGTC
TGTGACCTGTGGTAGACCGAGTGTCATTCTTGAATAGGACTGTTTAGCCA
ATGCTGATGCTGTGTGGCTAATATGAAATACATGTGTAGGGTTTTACCAA
CAATTGACCGACGAATCATATACAAATACATACATGTTCGCTACTGGCTG
GTCAGAAATAGTACACGATTGGTTTCAATTTTTATGGTTGATGAAATCTT
CGAAAATCAATGTTCAGTTTCCATGTAACAGGCTGTCATGTCATGCCATG
TCATGTCATGTTAAATGTTGTTAGCGTAGTTTTGAATTGAAATAAACAAA
TAGAGAAATGATCCCTTGTACCTAGTGTTAGCTTTCCACAGAAACTCTAA
TACTGAAATGCTTTTGCAGCAAATATTTCTATGCCAAAGCAGACTAAGTC
TTTTTTTTCCCGACTAGACACAGTTTAAATCTTGAGTAAGTTACGTAAAA
CCAAACACAGCTGCAGGGGCTGACGATTTAGATACGGTTAATCAAAACAT
TTTACAGATCACTTCGCATCGTCACCTTTGGAAGACCAATAGGCCCTTGG
TGATCCTGCTCGGTGGGATGGTACTGCTGTTGGCCCTGTACACATACCTG
CTACTGATCATAGAGGAGAAATATGAAGAACGACAAAAGATGATGATAGC
TATACGGAATATGGCCGATGCCTCTATTCTGAACAATCAACGAACATTGC
CAATGGACGAACACAAAGAAGGGTATTAGAGTTTTCCTATTTTCACCATA
CTAGTATATGCCATCATTCTCTTGCAATCAATGGCAGATAGCAAACCAAA
GATCAGATTATCATTTTATTTGTTCGTCGATAGCACCAGTAACTGTGAAA
CTTGATAAGGATTTTGAAACATGGATTGTGAAAAATAGCATCACATTTAC
CACAAAGATGACGATTTTAGCAAATGTTTCACAATGTTTTGTTTCCCTTT
TTAAATGGAGGCAAACCGTTGGGCGTGCCCAGCGAGATGCGTTCACCCAC
CAACCGACCGGGGATTCGTCAGGGCTTCGACTCGTCAACTCCATCAGTGG
AAGATCAGACTGGGCCGCCAAGTAAGTGTGATTCTATGATGATTCTAGTA
CTACGCCATGCAATACAGTGTTCCACAAAGATCCTTAATAGGACCCCTCT
TAACACTTGCACGGAGTGATATGTGATGGCCGCATATGCTGTCGAGAGGT
TAACATACTGCATCTAACGGCGTTGCAGCATAACTGATGCCTGTCTTCGA
AACAATCAACAAGCAATGGACGAACACAGAGAAGGGTAGTAAAGTCTTCC
TGTTATCATACTATATTTGTTATCATTATATAACCAGTGGTAGGGGCCGC
GCACGCAAAAATCAGCCAATAACCCCACAAAGGTATTTTCCTTTTTTAGA
CGGAGCCAAACTGCAGTTATGGAATGGCAGACACCTACTTGTGAACCAAA
GCAAAATGTCGCTTTCATAAAAGTTCACAAGGCAGGGTCCACTACAGTGC
AGAGTGTCTTCCTTCGCTACGGCTACTCCCACAATCTGACCGTCATGCTG
CCAGGGGGGAAGAATCCCGCGTCTTTCTCGTGGCCCAACTTCCCCACCCC
CGGGGACGCCTATCCCGTGAGTGGTGGGGTGTATAACATCCTCACCCATC
ATGCCAGGTACCATCCGGAAACCATCCGGGCTAGGATGCCACCCGACACG
GCCCGCGTCGCCATCATGAGACATCCCCTCGACCACCTGAAGTCCATGTT
CAATTTCATTCACCTAAATACTAAATACAAGCTTGACCCATTGAACCCGA
TTCAGATGTTCCTCGAAAACGTTACCGACTACGCAGAAATCGACAGCAAA
TTTTACGACGGACGCTCACCGACTAGAAATTTCCAGTCCTACGTTTTAGG
CTTCGACCAGAGGAAAGATTTTGGCGATGAGGAAGTAGAACAGCATTTTA
GAGAGATAAAAACAGACGTACCGTTTGTCATGATTCTTGAACATCTCGAT
GAATCCCTGATTGTCATCAAACGATCGATGTGTTGGGTTATGAAAGACAT
TCTCTACGATTGGACTGCGAGAAACTACCGAAGATTCTATTACAAATCAT
CAAGCTTGAGCCATCTGGCTATGGAGAACCATCGCAAGAGGAGTTCCATA
GACTACGCGCTGTACGAACACTATAACAGAACACTCTGGGAGGAGGTCGA
AAAGGGCGGGGAAGACTTCGCGTTGGAGCTTGAACACTTTCGAACGATGA
ATAGCAATGTGAACGAACATTGTAGGATTGATCCTAAAGGTAGCAAGAGC
TTTCCAGCGACAAGGTGGAGTATGGCATGGACGGTAGATGCTAACTTTTG
TAAGCAACTGAGACAAGAGCGGTTCATTTGGGATTGGAAACTGTCAATGA
GACAAAACGAAAAGATACGTAGGGAAAAACTAGATACTTTATAGCTAAAA
GATATACAATATACAATATACCTAACGTTGGTATATTCTATTTCTATAGA
ACTTGGTGGCAGCATGTTATTGAAACATATATAATGCAATACGAAGAAAG
TTACAGAAAATAGAACAGAAAAGGCAAGAAAATGATAATGTCAGAGAATA
ATTGCACAGAAATGTAGTAAATTATTGTAAGAAACATTGTAACTTACGTT
ATACAGGTCATTTTTAGTTTGGCCGGAACCACATCTAGAAGATTTTATGG
ACCATAAAAGCTGCTACGCCTCTTTACATTCTCCAGT Coding sequence (CDS) from alignment at Sc0000201:208267..211903- >transcript:BL96782_cuf2 ID=transcript:BL96782_cuf2|Name=transcript:BL96782_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=3933bp|location=Sequence derived from alignment at Sc0000201:208267..211903- (Branchiostoma lanceolatum)
ATGGTACTGCTGTTGGCCCTGTACACATACCTGCTACTGATCATAGAGGA
GAAATATGAAGAACGACAAAAGATGATGATAGCTATACGGAATATGGCCG
ATGCCTCTATTCTGAACAATCAACGAACATTGCCAATGGACGAACACAAA
GAAGGGCAAACCGTTGGGCGTGCCCAGCGAGATGCGTTCACCCACCAACC
GACCGGGGATTCGTCAGGGCTTCGACTCGTCAACTCCATCAGTGGAAGAT
CAGACTGGGCCGCCAAACGGAGCCAAACTGCAGTTATGGAATGGCAGACA
CCTACTTGTGAACCAAAGCAAAATGTCGCTTTCATAAAAGTTCACAAGGC
AGGGTCCACTACAGTGCAGAGTGTCTTCCTTCGCTACGGCTACTCCCACA
ATCTGACCGTCATGCTGCCAGGGGGGAAGAATCCCGCGTCTTTCTCGTGG
CCCAACTTCCCCACCCCCGGGGACGCCTATCCCGTGAGTGGTGGGGTGTA
TAACATCCTCACCCATCATGCCAGGTACCATCCGGAAACCATCCGGGCTA
GGATGCCACCCGACACGGCCCGCGTCGCCATCATGAGACATCCCCTCGAC
CACCTGAAGTCCATGTTCAATTTCATTCACCTAAATACTAAATACAAGCT
TGACCCATTGAACCCGATTCAGATGTTCCTCGAAAACGTTACCGACTACG
CAGAAATCGACAGCAAATTTTACGACGGACGCTCACCGACTAGAAATTTC
CAGTCCTACGTTTTAGGCTTCGACCAGAGGAAAGATTTTGGCGATGAGGA
AGTAGAACAGCATTTTAGAGAGATAAAAACAGACGTACCGTTTGTCATGA
TTCTTGAACATCTCGATGAATCCCTGATTGTCATCAAACGATCGATGTGT
TGGGTTATGAAAGACATTCTCTACGATTGGACTGCGAGAAACTACCGAAG
ATTCTATTACAAATCATCAAGCTTGAGCCATCTGGCTATGGAGAACCATC
GCAAGAGGAGTTCCATAGACTACGCGCTGTACGAACACTATAACAGAACA
CTCTGGGAGGAGGTCGAAAAGGGCGGGGAAGACTTCGCGTTGGAGCTTGA
ACACTTTCGAACGATGAATAGCAATGTGAACGAACATTGTAGGATTGATC
CTAAAGGTAGCAAGAGCTTTCCAGCGACAAGGTGGAGTATGGCATGGACG
GTAGATGCTAACTTTTGTAAGCAACTGAGACAAGAGCGGTTCATTTGGGA
TTGGAAACTGTCAATGAGACAAAACGAAAAGATACGTAGGGAAAAACTAG
ATACTTTATAGATGGTACTGCTGTTGGCCCTGTACACATACCTGCTACTG
ATCATAGAGGAGAAATATGAAGAACGACAAAAGATGATGATAGCTATACG
GAATATGGCCGATGCCTCTATTCTGAACAATCAACGAACATTGCCAATGG
ACGAACACAAAGAAGGGCAAACCGTTGGGCGTGCCCAGCGAGATGCGTTC
ACCCACCAACCGACCGGGGATTCGTCAGGGCTTCGACTCGTCAACTCCAT
CAGTGGAAGATCAGACTGGGCCGCCAAACGGAGCCAAACTGCAGTTATGG
AATGGCAGACACCTACTTGTGAACCAAAGCAAAATGTCGCTTTCATAAAA
GTTCACAAGGCAGGGTCCACTACAGTGCAGAGTGTCTTCCTTCGCTACGG
CTACTCCCACAATCTGACCGTCATGCTGCCAGGGGGGAAGAATCCCGCGT
CTTTCTCGTGGCCCAACTTCCCCACCCCCGGGGACGCCTATCCCGTGAGT
GGTGGGGTGTATAACATCCTCACCCATCATGCCAGGTACCATCCGGAAAC
CATCCGGGCTAGGATGCCACCCGACACGGCCCGCGTCGCCATCATGAGAC
ATCCCCTCGACCACCTGAAGTCCATGTTCAATTTCATTCACCTAAATACT
AAATACAAGCTTGACCCATTGAACCCGATTCAGATGTTCCTCGAAAACGT
TACCGACTACGCAGAAATCGACAGCAAATTTTACGACGGACGCTCACCGA
CTAGAAATTTCCAGTCCTACGTTTTAGGCTTCGACCAGAGGAAAGATTTT
GGCGATGAGGAAGTAGAACAGCATTTTAGAGAGATAAAAACAGACGTACC
GTTTGTCATGATTCTTGAACATCTCGATGAATCCCTGATTGTCATCAAAC
GATCGATGTGTTGGGTTATGAAAGACATTCTCTACGATTGGACTGCGAGA
AACTACCGAAGATTCTATTACAAATCATCAAGCTTGAGCCATCTGGCTAT
GGAGAACCATCGCAAGAGGAGTTCCATAGACTACGCGCTGTACGAACACT
ATAACAGAACACTCTGGGAGGAGGTCGAAAAGGGCGGGGAAGACTTCGCG
TTGGAGCTTGAACACTTTCGAACGATGAATAGCAATGTGAACGAACATTG
TAGGATTGATCCTAAAGGTAGCAAGAGCTTTCCAGCGACAAGGTGGAGTA
TGGCATGGACGGTAGATGCTAACTTTTGTAAGCAACTGAGACAAGAGCGG
TTCATTTGGGATTGGAAACTGTCAATGAGACAAAACGAAAAGATACGTAG
GGAAAAACTAGATACTTTATAGATGGTACTGCTGTTGGCCCTGTACACAT
ACCTGCTACTGATCATAGAGGAGAAATATGAAGAACGACAAAAGATGATG
ATAGCTATACGGAATATGGCCGATGCCTCTATTCTGAACAATCAACGAAC
ATTGCCAATGGACGAACACAAAGAAGGGCAAACCGTTGGGCGTGCCCAGC
GAGATGCGTTCACCCACCAACCGACCGGGGATTCGTCAGGGCTTCGACTC
GTCAACTCCATCAGTGGAAGATCAGACTGGGCCGCCAAACGGAGCCAAAC
TGCAGTTATGGAATGGCAGACACCTACTTGTGAACCAAAGCAAAATGTCG
CTTTCATAAAAGTTCACAAGGCAGGGTCCACTACAGTGCAGAGTGTCTTC
CTTCGCTACGGCTACTCCCACAATCTGACCGTCATGCTGCCAGGGGGGAA
GAATCCCGCGTCTTTCTCGTGGCCCAACTTCCCCACCCCCGGGGACGCCT
ATCCCGTGAGTGGTGGGGTGTATAACATCCTCACCCATCATGCCAGGTAC
CATCCGGAAACCATCCGGGCTAGGATGCCACCCGACACGGCCCGCGTCGC
CATCATGAGACATCCCCTCGACCACCTGAAGTCCATGTTCAATTTCATTC
ACCTAAATACTAAATACAAGCTTGACCCATTGAACCCGATTCAGATGTTC
CTCGAAAACGTTACCGACTACGCAGAAATCGACAGCAAATTTTACGACGG
ACGCTCACCGACTAGAAATTTCCAGTCCTACGTTTTAGGCTTCGACCAGA
GGAAAGATTTTGGCGATGAGGAAGTAGAACAGCATTTTAGAGAGATAAAA
ACAGACGTACCGTTTGTCATGATTCTTGAACATCTCGATGAATCCCTGAT
TGTCATCAAACGATCGATGTGTTGGGTTATGAAAGACATTCTCTACGATT
GGACTGCGAGAAACTACCGAAGATTCTATTACAAATCATCAAGCTTGAGC
CATCTGGCTATGGAGAACCATCGCAAGAGGAGTTCCATAGACTACGCGCT
GTACGAACACTATAACAGAACACTCTGGGAGGAGGTCGAAAAGGGCGGGG
AAGACTTCGCGTTGGAGCTTGAACACTTTCGAACGATGAATAGCAATGTG
AACGAACATTGTAGGATTGATCCTAAAGGTAGCAAGAGCTTTCCAGCGAC
AAGGTGGAGTATGGCATGGACGGTAGATGCTAACTTTTGTAAGCAACTGA
GACAAGAGCGGTTCATTTGGGATTGGAAACTGTCAATGAGACAAAACGAA
AAGATACGTAGGGAAAAACTAGATACTTTATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000201 | genome | Sc0000201:208267..211903 - |
Properties
| Property Name | Value |
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| Transcript id | BL96782_cuf2 |
| Biotype | protein_coding |
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