|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96781_cuf5 >transcript:BL96781_cuf5-protein ID=transcript:BL96781_cuf5-protein|Name=transcript:BL96781_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=243bp
ITLKNSVDRESPFWFGLRDVLQENVWRWMDGQELAQGDFTDWGPGEPNDA
FSGQGEDCAEYYPLKKNKWNDKACHYDRKFICQVDKTGSVVPAKLHVSIV
GNMSNSDSELLGTFPFKVTYRQTNRVHMDFHREQPFRVVFTAELDHSVNS
TDGAGQIHLYDVIVLNDKCRPTAESAAAGIFQEPTLSKGAIIGIIVVLVI
IAVAIATAVKVARSMKRQHLRLMSTSTTVLMRRDNVMFEPDAE Run BLAST on NCBI mRNA from alignment at Sc0000201:205694..209588+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96781_cuf5 ID=transcript:BL96781_cuf5|Name=transcript:BL96781_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=3895bp|location=Sequence derived from alignment at Sc0000201:205694..209588+ (Branchiostoma lanceolatum)
GATCACGCTGAAGAACTCGGTCGATCGGGAATCTCCGTTTTGGTTCGGCC
TTCGCGACGTTCTTCAGGAAAACGTCTGGAGGTGGATGGATGGCCAAGAA
CTGGCCCAGGGGGACTTCACGGACTGGGGACCCGGGGAACCGAATGACGC
CTTTTCGGGACAGGGCGAGGATTGCGCCGAATACTACCCACTCAAGAAGA
ACAAGTGGAACGACAAGGCATGCCATTATGACCGGAAGTTTATCTGCCAA
GTGGATAAAACAGGTTGTTATAGTTACCCATGTCTGTCAATATACAATGT
ACGCAATATACGCAATGACACTTTCGGCCATTTTCAAGTTGCTGCTGATC
AAAATTAATCATAATTTTAGAAATACCGTATGATATACGATGGAGGCATT
TCCTTCTAAGGAACTTTTACAATTACATCACCTATTCTACTGTTTGCCTG
TTTCTTTCTCTATATCTCTCCATACCTAAGATTTCTCCATACTTTTACTC
CGGTAGAAGCTGTCCGCGTCTCGAGCTCCAGCGACGGTGTTCCTTACGAT
GCCAAAGCGGTACTTGAATCTCCCGTCTTCAGTACCAACTGTAGCAACAA
CACACTCGTTTTCCACTACCACATGCAAGGTTCCGTTGTCCCCGCGAAAC
TACACGTCTCAATCGTTGGCAACATGTCTAACTCTGATTCTGAATTGCTG
GGAACATTTCCGTTCAAGGTGACGTATAGACAAACGAATCGCGTACATAT
GGATTTCCATAGGGAACAGCCGTTCCGTGTAGTCTTCACTGCTGAACTAG
ACCATTCGGTCAACTCAACGGATGGAGCAGGGCAGATACACCTGTATGAT
GTCATCGTTCTCAACGACAAATGCAGACCTACAGGTACGCTTAATGACAT
TGACTAGATATAGATCGGTTCTGGATATGTAAACTGCGTTCAAGTTGAAT
GTTGGGTCATCTATTTTGTCTAAACTTGTTAATGTGTTTGATGTCCCTTT
CTGGTGTGTTTCAGTTTCGTTCGCTCCAGTCGTGATATATGGTAACTTTG
CGATGAAGTTATTGTCATAAAACATTGCATACCACACGGTACACTGTCTG
TTTTGTTTTTGAGGAGCAGCCACGTAGGATTTGAGTCACGAGCAAAAGTA
ATAACACAATGAAATGAGAAGATTTGTTTCTTTCCTCCAGCCGAATCAGC
AGCAGCAGGCATTTTCCAAGGTGAGTTCATACAGAATAGGAATTAATATC
TTGTAGCTACATCAAGTTATCTGTCAATCGGCTTAATTTGGTTGATCATT
CCAACATTGCAGGCAAGTGACGTTAGTAATTATTTGCAATTATTCTTTCG
TTAATGTGCGTATCATTATCAACATCTTTGTTGCGTAGATTGTTTTTGTC
CTCTTGTATCGTTTCGCACGACCAAGTTGTTTCATTAATTAATATTTCTT
TTCTTTCCTTTTCTTTTCTTTCCGAAGAGCCGACTCTTTCCAAGGGGGCC
ATTATCGGGATCATCGTCGTGTTGGTTATTATAGCAGTAGCCATTGCAAC
AGCAGTTAAAGTTGCCAGGTGGGCAGACGTTCGACTTATACATATACGTA
CTTAAGGGTTAGATTAGATTAGTATTGAAAGGGTTTATCTTAGTTTGTCA
TGTATCTACAGAAGGTCTGATTTTTTCAAGACGGTAAAGATCCCCACCTC
TCCCCCTCCATAATGGAACAGGCGAACGGGTTATTTATTGTTATGATTGA
CTACTTGAGATTTATCATTCACCACTTGTGGCACTTCTCTATATGGCGTT
ACGGCGTCATAACCGATATGAAATGAGGACTTCTGATTGGTCGACGTCAT
CTGGCTATATGATAATATAACATGATATCCTGTAGGATATTGTAACAACA
CGCCTTGAATGAGTGAACCGTACAGTTTTAGCTCACATGTCAGAGGTTTC
CGTTGAGAAATTGGTAGAATCCTTGGATTCTACCAATTTGTAATTATTGT
GTGTGCTCGGGGCCTAGTCTAGCCAAATCAAGCTTCTAGCAACCCTTCTA
AAGCTGGTCAGGCCCAATCCCGACATTGAGATATTGTGTAAGAAGGGCTT
TTCGGGACCTGGCTTTGGATTGTGAGTAAGGCCAAAACTGAAACCTTCCA
GCATCACACACAAAAAAATGGCAAAAGTAGTCGACTATAGTGGCGACATG
TTTTTACCGTTTTTACATGTTTTTCACCCCAGATCAATGAAACGTCAACA
TCTCCGCCTGATGTCAACTAGCACAACCGTTTTGATGAGGCGAGACAACG
TGATGTTTGAACCGGATGCGGAGTAGTGTCAATTCACGCACATGGCTTTC
ACTTCAGGAATTTAAGAAATTTCCGAGTCACCAAATTTTTGGGCAGACAA
GGAGATAAAATTACAGAGAATATTATTCCTTTTGTACCCATCCTTTATAC
TAGAATACAGGATCTTGATTCGTTTTCGTTTATAAGATAACTCAGTTTTA
TATGGACTGGAAAGTTCTTGTAGCCCATAGAAGCGGCTGTGCAATCATAT
ATGTTCAAAAAAGGAACAAGAGAACTGGAGAATGTAAAGAGGCGTAGCAG
CTTTTATGGTCCATAAAATCTTCTAGATGTGGTTCCGGCCAAACTAAAAA
TGACCTGTATAACGTAAGTTACAATGTTTCTTACAATAATTTACTACATT
TCTGTGCAATTATTCTCTGACATTATCATTTTCTTGCCTTTTCTGTTCTA
TTTTCTGTAACTTTCTTCGTATTGCATTATATATGTTTCAATAACATGCT
GCCACCAAGTTCTATAGAAATAGAATATACCAACGTTAGGTATATTGTAT
ATTGTATATCTTTTAGCTATAAAGTATCTAGTTTTTCCCTACGTATCTTT
TCGTTTTGTCTCATTGACAGTTTCCAATCCCAAATGAACCGCTCTTGTCT
CAGTTGCTTACAAAAGTTAGCATCTACCGTCCATGCCATACTCCACCTTG
TCGCTGGAAAGCTCTTGCTACCTTTAGGATCAATCCTACAATGTTCGTTC
ACATTGCTATTCATCGTTCGAAAGTGTTCAAGCTCCAACGCGAAGTCTTC
CCCGCCCTTTTCGACCTCCTCCCAGAGTGTTCTGTTATAGTGTTCGTACA
GCGCGTAGTCTATGGAACTCCTCTTGCGATGGTTCTCCATAGCCAGATGG
CTCAAGCTTGATGATTTGTAATAGAATCTTCGGTAGTTTCTCGCAGTCCA
ATCGTAGAGAATGTCTTTCATAACCCAACACATCGATCGTTTGATGACAA
TCAGGGATTCATCGAGATGTTCAAGAATCATGACAAACGGTACGTCTGTT
TTTATCTCTCTAAAATGCTGTTCTACTTCCTCATCGCCAAAATCTTTCCT
CTGGTCGAAGCCTAAAACGTAGGACTGGAAATTTCTAGTCGGTGAGCGTC
CGTCGTAAAATTTGCTGTCGATTTCTGCGTAGTCGGTAACGTTTTCGAGG
AACATCTGAATCGGGTTCAATGGGTCAAGCTTGTATTTAGTATTTAGGTG
AATGAAATTGAACATGGACTTCAGGTGGTCGAGGGGATGTCTCATGATGG
CGACGCGGGCCGTGTCGGGTGGCATCCTAGCCCGGATGGTTTCCGGATGG
TACCTGGCATGATGGGTGAGGATGTTATACACCCCACCACTCACGGGATA
GGCGTCCCCGGGGGTGGGGAAGTTGGGCCACGAGAAAGACGCGGGATTCT
TCCCCCCTGGCAGCATGACGGTCAGATTGTGGGAGTAGCCGTAGCGAAGG
AAGACACTCTGCACTGTAGTGGACCCTGCCTTGTGAACTTTTATGAAAGC
GACATTTTGCTTTGGTTCACAAGTAGGTGTCTGCCATTCCATAAC Coding sequence (CDS) from alignment at Sc0000201:205694..209588+ >transcript:BL96781_cuf5 ID=transcript:BL96781_cuf5|Name=transcript:BL96781_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=3660bp|location=Sequence derived from alignment at Sc0000201:205694..209588+ (Branchiostoma lanceolatum)
ATCACGCTGAAGAACTCGGTCGATCGGGAATCTCCGTTTTGGTTCGGCCT
TCGCGACGTTCTTCAGGAAAACGTCTGGAGGTGGATGGATGGCCAAGAAC
TGGCCCAGGGGGACTTCACGGACTGGGGACCCGGGGAACCGAATGACGCC
TTTTCGGGACAGGGCGAGGATTGCGCCGAATACTACCCACTCAAGAAGAA
CAAGTGGAACGACAAGGCATGCCATTATGACCGGAAGTTTATCTGCCAAG
TGGATAAAACAGGTTCCGTTGTCCCCGCGAAACTACACGTCTCAATCGTT
GGCAACATGTCTAACTCTGATTCTGAATTGCTGGGAACATTTCCGTTCAA
GGTGACGTATAGACAAACGAATCGCGTACATATGGATTTCCATAGGGAAC
AGCCGTTCCGTGTAGTCTTCACTGCTGAACTAGACCATTCGGTCAACTCA
ACGGATGGAGCAGGGCAGATACACCTGTATGATGTCATCGTTCTCAACGA
CAAATGCAGACCTACAGCCGAATCAGCAGCAGCAGGCATTTTCCAAGAGC
CGACTCTTTCCAAGGGGGCCATTATCGGGATCATCGTCGTGTTGGTTATT
ATAGCAGTAGCCATTGCAACAGCAGTTAAAGTTGCCAGATCAATGAAACG
TCAACATCTCCGCCTGATGTCAACTAGCACAACCGTTTTGATGAGGCGAG
ACAACGTGATGTTTGAACCGGATGCGGAGTAGATCACGCTGAAGAACTCG
GTCGATCGGGAATCTCCGTTTTGGTTCGGCCTTCGCGACGTTCTTCAGGA
AAACGTCTGGAGGTGGATGGATGGCCAAGAACTGGCCCAGGGGGACTTCA
CGGACTGGGGACCCGGGGAACCGAATGACGCCTTTTCGGGACAGGGCGAG
GATTGCGCCGAATACTACCCACTCAAGAAGAACAAGTGGAACGACAAGGC
ATGCCATTATGACCGGAAGTTTATCTGCCAAGTGGATAAAACAGGTTCCG
TTGTCCCCGCGAAACTACACGTCTCAATCGTTGGCAACATGTCTAACTCT
GATTCTGAATTGCTGGGAACATTTCCGTTCAAGGTGACGTATAGACAAAC
GAATCGCGTACATATGGATTTCCATAGGGAACAGCCGTTCCGTGTAGTCT
TCACTGCTGAACTAGACCATTCGGTCAACTCAACGGATGGAGCAGGGCAG
ATACACCTGTATGATGTCATCGTTCTCAACGACAAATGCAGACCTACAGC
CGAATCAGCAGCAGCAGGCATTTTCCAAGAGCCGACTCTTTCCAAGGGGG
CCATTATCGGGATCATCGTCGTGTTGGTTATTATAGCAGTAGCCATTGCA
ACAGCAGTTAAAGTTGCCAGATCAATGAAACGTCAACATCTCCGCCTGAT
GTCAACTAGCACAACCGTTTTGATGAGGCGAGACAACGTGATGTTTGAAC
CGGATGCGGAGTAGATCACGCTGAAGAACTCGGTCGATCGGGAATCTCCG
TTTTGGTTCGGCCTTCGCGACGTTCTTCAGGAAAACGTCTGGAGGTGGAT
GGATGGCCAAGAACTGGCCCAGGGGGACTTCACGGACTGGGGACCCGGGG
AACCGAATGACGCCTTTTCGGGACAGGGCGAGGATTGCGCCGAATACTAC
CCACTCAAGAAGAACAAGTGGAACGACAAGGCATGCCATTATGACCGGAA
GTTTATCTGCCAAGTGGATAAAACAGGTTCCGTTGTCCCCGCGAAACTAC
ACGTCTCAATCGTTGGCAACATGTCTAACTCTGATTCTGAATTGCTGGGA
ACATTTCCGTTCAAGGTGACGTATAGACAAACGAATCGCGTACATATGGA
TTTCCATAGGGAACAGCCGTTCCGTGTAGTCTTCACTGCTGAACTAGACC
ATTCGGTCAACTCAACGGATGGAGCAGGGCAGATACACCTGTATGATGTC
ATCGTTCTCAACGACAAATGCAGACCTACAGCCGAATCAGCAGCAGCAGG
CATTTTCCAAGAGCCGACTCTTTCCAAGGGGGCCATTATCGGGATCATCG
TCGTGTTGGTTATTATAGCAGTAGCCATTGCAACAGCAGTTAAAGTTGCC
AGATCAATGAAACGTCAACATCTCCGCCTGATGTCAACTAGCACAACCGT
TTTGATGAGGCGAGACAACGTGATGTTTGAACCGGATGCGGAGTAGATCA
CGCTGAAGAACTCGGTCGATCGGGAATCTCCGTTTTGGTTCGGCCTTCGC
GACGTTCTTCAGGAAAACGTCTGGAGGTGGATGGATGGCCAAGAACTGGC
CCAGGGGGACTTCACGGACTGGGGACCCGGGGAACCGAATGACGCCTTTT
CGGGACAGGGCGAGGATTGCGCCGAATACTACCCACTCAAGAAGAACAAG
TGGAACGACAAGGCATGCCATTATGACCGGAAGTTTATCTGCCAAGTGGA
TAAAACAGGTTCCGTTGTCCCCGCGAAACTACACGTCTCAATCGTTGGCA
ACATGTCTAACTCTGATTCTGAATTGCTGGGAACATTTCCGTTCAAGGTG
ACGTATAGACAAACGAATCGCGTACATATGGATTTCCATAGGGAACAGCC
GTTCCGTGTAGTCTTCACTGCTGAACTAGACCATTCGGTCAACTCAACGG
ATGGAGCAGGGCAGATACACCTGTATGATGTCATCGTTCTCAACGACAAA
TGCAGACCTACAGCCGAATCAGCAGCAGCAGGCATTTTCCAAGAGCCGAC
TCTTTCCAAGGGGGCCATTATCGGGATCATCGTCGTGTTGGTTATTATAG
CAGTAGCCATTGCAACAGCAGTTAAAGTTGCCAGATCAATGAAACGTCAA
CATCTCCGCCTGATGTCAACTAGCACAACCGTTTTGATGAGGCGAGACAA
CGTGATGTTTGAACCGGATGCGGAGTAGATCACGCTGAAGAACTCGGTCG
ATCGGGAATCTCCGTTTTGGTTCGGCCTTCGCGACGTTCTTCAGGAAAAC
GTCTGGAGGTGGATGGATGGCCAAGAACTGGCCCAGGGGGACTTCACGGA
CTGGGGACCCGGGGAACCGAATGACGCCTTTTCGGGACAGGGCGAGGATT
GCGCCGAATACTACCCACTCAAGAAGAACAAGTGGAACGACAAGGCATGC
CATTATGACCGGAAGTTTATCTGCCAAGTGGATAAAACAGGTTCCGTTGT
CCCCGCGAAACTACACGTCTCAATCGTTGGCAACATGTCTAACTCTGATT
CTGAATTGCTGGGAACATTTCCGTTCAAGGTGACGTATAGACAAACGAAT
CGCGTACATATGGATTTCCATAGGGAACAGCCGTTCCGTGTAGTCTTCAC
TGCTGAACTAGACCATTCGGTCAACTCAACGGATGGAGCAGGGCAGATAC
ACCTGTATGATGTCATCGTTCTCAACGACAAATGCAGACCTACAGCCGAA
TCAGCAGCAGCAGGCATTTTCCAAGAGCCGACTCTTTCCAAGGGGGCCAT
TATCGGGATCATCGTCGTGTTGGTTATTATAGCAGTAGCCATTGCAACAG
CAGTTAAAGTTGCCAGATCAATGAAACGTCAACATCTCCGCCTGATGTCA
ACTAGCACAACCGTTTTGATGAGGCGAGACAACGTGATGTTTGAACCGGA
TGCGGAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000201 | genome | Sc0000201:205694..209588 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96781_cuf5 |
| Biotype | protein_coding |
|
