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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96779_cuf10 >transcript:BL96779_cuf10-protein ID=transcript:BL96779_cuf10-protein|Name=transcript:BL96779_cuf10|organism=Branchiostoma lanceolatum|type=polypeptide|length=170bp
MAKTFIRCLLLLILTTACSAVTFTYSSASYTVGEDASAGDYVITSGDVTV
TWTTSGGTTPFEIISPVGSPFQVDSTGAVTVASSSSLDYETTSMYVVTVR
ANDNTGVTDQATVTIMVTDAAEPPTFSNLPASRAVPEDVSVGTAVYTLSA
ADPDEPAQTLTYTIVSQTPS Run BLAST on NCBI mRNA from alignment at Sc0000124:487670..495720- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96779_cuf10 ID=transcript:BL96779_cuf10|Name=transcript:BL96779_cuf10|organism=Branchiostoma lanceolatum|type=mRNA|length=8051bp|location=Sequence derived from alignment at Sc0000124:487670..495720- (Branchiostoma lanceolatum)
CACGTAGCCCCCCTTGCGTCACAAACGAACCATGGCGACATCTTGATACA
AGTCAGAAAATATTTCAAGACTTTGGCGAGGTGACGGGAAGACGTATGAA
TCTGGACTTAAAGGATCTCAGTATCTGAAGTTCACCGTCTTTAGATTTGT
ACTTCTTAGTTTCTGCTTGACGACGGCATATATTAGACAACAATCTGTCG
AATCACGGAAGGGCCGAATTAACGCTAACATTCTACAACAACACGATGGA
GCACACGAGTGATCGAAGAATGCAAGGTGTCGTTTAAGATGGCTAAGACT
TTCATCAGGTGTCTGCTACTTCTGATCTTGACGACAGCATGCTCAGGTAA
GTCTCAAACGTCCTACAGGTGTATAACGCCACTTTAAGTTATCTAGAATC
AAGTGCAGGTGGACGGGTAAGTCACATGTGAACGATCTGCGGAATTTCTA
TCGACTCTGCAGGTGGTATTTCTGGGGCAATGACCAAGCCGAAGTGTCTA
GTCCTTTTTGACAGTTCACCTGTAAGTTAGGGTACACCTGTCGACATCTG
TAAACTACTAAACAGGTGAGGTGAAAATCCAATTTGTCTGTCAGGCGAAA
AAAATCGTCCACCTTTTCGTGAAACAGGGAGGTGCAACGTACAGCTTGTA
TATCATATGAAGCCGTTCTAATGAAAATCAGCGATGAGGCCTTGCAAAAT
AAGGGCGGTAGGTGTTCTCTTTTTTAAAAATGAAAATAAACGTTTTTGAC
TTCGGCTGAAGTGATCCAACAAATACAGTTTATAATCAAAATGTAAAACT
GATCATGAAATGCACTGGTATTTTCAACTTCATATTGTAACCATACAGAT
ATACATTGCACTTGTACAAGTATATTGATAAACAGAACAACTTTAACGGT
TTTTGCTACATGTTTTTACACCGACTGTTCAAAGAATTCTTCTGTTTACA
GGAATTCTGTTTCTTATTTCAGCACTCAAATGCCAGATAAAAATATTATT
TCCCTTGTCAGCGGCCGACAGACGAAAAGGCTGGTCGGCAGGTTTTTGCT
AGGGTCGGTCGGGTAACCGAAAACACAGCATTTTTTCTAGGCCTGAGGGT
GTTGTTAGCCATCAAGAACGTGACATATCTGGATCCATTCAGTTCATATC
AAAACGACTTGGGTGACTTCTACATGTTTGATTACAAGCCTGTTGTATAG
TGTACATTGTACTCTCTAGTATCAGGTTTATGAATGATGTTACTCTGTGC
TAGTCTCTACCAGACTAACTACGCCGGCTATAGGGAGAACATTTGCAAGG
CTTTCATTTGCAGGCTCCGTGGCAGATTGGACCCTCTCTCCGTAGCAGAT
TCCCTTAGCATACTATTCACTCTATTCGACAAATTTCTACTATTTTTCCA
GCCATCTGCGGGGCCTGGCAGAGGCTAACTCTGTGCCAATTATCGCTTTT
TATGTGCAATCATGCAAACATCCTCTCAACCATTTTTGTCAACTCGCATG
TCAGAATATTTGTTTTTACAACATAAGATAATTCTAATGTAGTGCCATTT
AACGGATAATTTGTATGTAGATGCAGTCATGTCGTTTAAAGTATAGGAGG
AAATATACTTAACGTTACATCTACTACGTATGTATAATTGAACAATTTGA
AAGTTGGGTTTGTCAAGAGAGTTCGCTAATGAGGTGGAAGCACAGACATG
TGCCGACAGGGAACAGGAGACATGACGTCAGCACTCCAGAACGTCAAGTT
TAACCTGTTAACCGTCACTTCTAAAGGTTCCATCTGGCATGGCTCAATTT
CAAACGCGTAGTTGAAGGGCGCCGCTTGTTGGAACACCCGTCCACACAGG
GGTCCTTACACCACTTTTACTCACCCCCTAGTAGACTGTCTGAGTCTCTG
TTCTCTTTGGCCCAGCAAAATTCATGTTGTGTTTCCGTTAACGGTCTTGA
AAAAAAACTGAGGGTCGGTAGGAGGAAGGGGATCGTCTTTTGTTTAGATT
CGGCCGTCAACAGTCTAGTAACAGGGTATCACCATAAAGGGGACCTAGGT
TTGGTGGTTCTGTTTACATCACTTTTTCTCTTGCAACGGAAATGACGAGA
ACATGTTGGAAAACGATGGCATCATTTTTGAACCACTCACACCGGGAAGG
ACCCCTACTCTTTTCGATAAGTGTGGTGGGTTCTTTAACGTGCTCGAGGT
GTGTCTCTCCTCAAACACGGGACCTCCATTTAACGTCATATCCGAGGGAC
GTCCCTAACCGACGCTAGGTACTCATTTACACCGGAGTGAAGTGAGGAAA
GTCGTGTATATAAGTGCTATTCCCAAGGGCACAACATCAGGGCATATGGA
TGGTTTCGAACCCGAGACCTCTCGGTTGTGGGCGAAACACCCTACCGATT
GCGCCACACGATGTCACTGATAAAACGTTACGTTCCTGTTTTCACCTGAC
ATTTAAAGTGACGTAGATGACACTGACTACATCACATCTGTCACATTCAG
AATGATTTATGACTGCCATGCCCTCTTTTTGTCTAACGTCTAGTCGTTAC
GTGTTTACGTTGCAACTTAGATGTGTTTATCTTCTTATCGAATTTGTGGA
AATGTAGCGATACGTTACTGGCGACAAATCGCGCACAGTGTTACAATTTT
ACCAACCACGAGAAAATCATACATAAGACCCACAAGTGGGGGTGGGCTGA
AAGAGACATACCGCCGTCTTCTGTGCAAACAAAAGTTGTAGATCACCTTT
CTGTACATTCTTTTTCACTTTTCTGGTTGTTTGCGTTGTAACGTTAGCCG
TTCCGATAGTGACCGCTCGGCCGGGAGACACCGATTTCTCTGTTTGTGTT
TAAGAAAAGAGAACAGAGAAAGGCGAGTCAAGTGTCTTGTATACGTTACG
GCGGTTGTTGCAAAAGACGTCTTGCAAGTAACAGAATTTTGACAGCAAGA
GCTTGTAACGTTTGCTTCTTTAATTGTAAACTAGAGTTAGATTGCCGCGG
CTGAAAGTGAAGTAACGTTCTATCAGGATTTTTCTCTGCTACATGTACAA
ACCTTTACTGATGTGGTGGAAAACAGAAGTTTTGTGTGTGCGGTAACGTA
AAGAAAGAAAGGTTTTCGCATGCCCGAATGACACCTTAAGAGCCTTTTCA
CTTTACGCAACCTTAAAAGCCGGACGGGTGTTCAATTGTGGGTGGTCGGC
AGTTTGTGCCGTATCCATGGCAACAGGGACTGGGCACAAAAAGTATAGAT
ATCAGAGGACCCTATAGATGTCTTTGTGTCCTCATGGACGTTTCTGCACC
CTTTAGATAGAAGTCAATCACCTCTGTCTTGTTGGGGTGAAAGCACAGCC
CGTTTCCATAGCGACCATTGGCTTCCTTTGTATTGTAGAGACTTTGGGAT
AGATCTACTACAAAGCGTGGTGTTTTTTTATTGTGCTGGTGAGTGGAGCG
AGGAAGACACATGGCAATAAAAAAACGCGTTGAGATACTTAGAAGCAGTT
GCATATAGACGACAGTTACAACAATGATATTGCTAGCTACATGTATCTGA
TGTCCACAATTTTACGCTTGTCATACCACTATTGATAGCCTCATCATAGT
CTGTGTAACGAAAACTCCGCTGTCCGGGCATTTATGGCCCCTTCCCGCTG
TAGGCGGGGGCCAGATGTAGTCTCCAAGCAGGCCAAATGGATTGCCAAGA
CCGTATCCAACTGGAAGAAGGAGCTTGTATAGCAATCCTTGCAAAACGTA
CTTCTTCTGCCAGTTTGATACGGTCTTCGCAACCTATAGATCTGCTTGGA
GATTAGGCCAGATGCTGGGCCGCCAACTATAGCGCGATTCTTTAGAAATC
CTTCTTTTCCATTTAGGTTTTTGGGAAATCTGTAACTCTCCAAGTAGAGG
AGGGGATACGGCTATTTTTTACGTGTTTTAGGCGTTTTTGTCGGGCTTAC
TACTTTTAATTCTCTTTGTCTCGTGGGGTTTGAAGAGACAAAAAAAATGA
CAAAGTAGAAAGCCCGACAAAAACGCCTAAAAACACGTAAAAAAAACAGC
CGGAACCCCTCCTCTGCTTGGAGAGTAGAAATCTGTAAGAACCCAGAGGA
ATGTGTCGTACATCATAGTAACGACGCATAGATGCAGAGGCTGTCCGCAT
TTTCCCTTTCTTAAATCTTGCTGTATTCAAGTTTACACGTAACAAAGAAA
AATAGCATGGCACACGTAACGTTACCAAAAGGTGCATGACATATAACCAC
CAAAAAACAAAGACTTTTGTCTGATATGATATACTTTACTTATTCAAGAA
TAAAAAACATTGGCTATACTCCCTACGTCTACAAATTACTAGACAAAATC
CACACTAAACAAAACTTTATAATCCCTTTCCCCAATTATCCCTGAGTTTC
CTAAGCTCGCCTTGTCTCTGTGGTATATTGTATTCCAATTTGTAAAAAAA
GTGAACATAAGATATAGAAGCAGGCAATTGTAAAGAGTGTTGACGATGTT
CAAAGATCTTACCCAAGAGCATAATAACATTTGCATATATTTTCTTTCCA
CCTTAGCGGTGACGTTCACCTACAGCAGTGCGTCATATACCGTAGGCGAG
GACGCCTCGGCGGGCGATTACGTCATCACGTCTGGTGACGTCACAGTGAC
GTGGACAACCAGCGGCGGGACCACGCCGTTCGAGATCATCAGTCCCGTCG
GCTCACCTTTCCAAGTGGACTCCACGGGGGCGGTGAGATTCTAACAAACA
AACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAAATTTTCAC
ACGCTCGCATCAGTCTTAATGTTTCTATAGGGAGGATGTCATCCATATAA
TCGAATCCTCATAGCCTTACACGGAAAATGTACGAGAACAGGTAAACACT
AAGTTATAAGCGACGTAACAGAAGATTAGCTCCGAGCCGCAAGGTCCTAG
CAACGGCATGGTAACCGGGTTCGAACAGGTATTCGTAAGTTCGATCCCGT
TACACTGCTTCCAGTTCTTCGAAGCATTCGATACCTGAAATAATGTAGGG
CGTAAGGGCCGAAGCAAAACGTTTGTAAATGGGGACGGATGGCAAAGTAC
AGTCTGCGGGAAGTGATCAGAGGAGAAACCCGGTGCTAGAATAGGATGGA
TCCGATGGATACCAGGTTATACGAGCCGGGTGAGTCAGAAAATATTTCTT
CTTGAAACTGGTCAAATCCCTTCCCCATGGCTACATACTAGCATCACTCC
CATAGAGAATTGTATAAAGCAGCTGTATTTCCATCAGTATCATAGCAGGT
GTGGGTGTGGTCATTTTGAAATCGACTCAATCGCTCACAAAAGTCAGAAT
GACAAATTGCGATCTTTCAGTCTCAAGGAGATGTGTGCCTTTACATTTGT
GCCAAGTTTCAACTCATTACAAAAACGAATCCTCTATGATACTAATGGCA
TTTCTTTCTTGTATCAAACAATTTCAAATTGGAAATGCTTTGCCTATACA
GGTGACCGTGGCCTCGTCCTCCAGTTTGGATTACGAGACTACCAGCATGT
ACGTAGTGACTGTACGGGCGAACGACAACACCGGCGTCACAGGTGAGAAC
TTTTAAATGATGACATTGACAAACACAAACGTTTTCCGAAAAACGGTAGG
AATATACGCAAGATAACAGTTACTCAAGCAAGTCAGAGTTTCGGATCAAT
ACCTGGTGAACCCCAGATTCTGGTTCAGTCACTGACGAAAGACAGCGGGT
GCTGTCTGAAACGTCTGGCCGTTTACAGAATTATCCAGTTGCTTGAGTAA
CTGTTATCTTGTGTATCTTACTACCCTACCTTGCCCCTAATCCTTAAGCC
CCCGTCACAAATCAAGAAATTAGCTCGGCCGACTTGTCGGCGAGCTCCAA
ATGGCGATTTTCGGGCGAAGTACGGCCGACGTCCTGTCGATTCTACGGGC
TTCGGGCGAATTTTCGGAGCTCGGCCGACGTTCGCGTGTCACTGGAAGCT
GCGCTTAAATTCAGCGAGGCCTCGGCGACGATTTTTTTTAACTCGCACAG
CTCGTCAACAGTTTGCCCGTAGCTCGCCCGAGCAACGCCCAGCGCTCGGC
CAATATTCGGGCGGGCATCCGAGGATTTTAGACCCGATTTTTGGTCGGTC
GGAGGTCGCCCGAACTCTTCGGCCTCGTGCGAGCCTCGCACGGGCCTTGA
ACAATAATCGGACGACCGTCGTCAGTGTTCCGGCCGACTCATGAAAAGTA
AGGCGTGCTTCGGGCGAGCGTTGTGCAGGTGTTGATGGGAGCTTGGACGG
GCCTCGGCCGAATTCCTTCTTGTTTATAGATAAAAGGATCCGGAAACGAC
AGTTTGGTTTATAACATAAGATGATAAATGATACTGTAATATTAACTAAT
ACTAATTTCAACTTGTCGAAGAATGCTGCCAAACTTTTCCAATGAAAGAC
AATTCAATGCAAAGTTAAATTTTCATTCAAAAAAAAAAAATATAAATAAA
ATGTTGACACCGAAGACAATGCTTCTTGTTTCTATTTTGGTATTGGTTTG
GGTGTTTCAATTTGTATATTAATGAACTGGGGCTTGACTTTTGAGGTTTG
ACTTCACTTCCTGAGTTTTTTCTCCACAAAATGACTAGTTGAAAGTCCAC
TGAGTCATTATAGATCTATGTTTGTCTGCCGAGGCACGCCCAGGCGTCGG
CAGGGCGTCGATAGGCTTGTCAACGGTCGGTCGAAGCTCGGACGGCGTTC
GCCCGAGCTTCGGTCGATTTCTATTTGGTGAAAATTTTTGGATCGGGGTT
AAACGACTGATCTGTTGACTTTGTGGCTCCTGCACTTGTATTTTGATTGG
TCTATAACAAAATTCCTCTCTATGTGATTATTTTCAGTGTGCCCACCTAC
TTCACTTGTGCCCTACAGATTTGCCACAACTCAGAAAGTAAAGTTGGTCC
AAATTTGAGATTGTTACCAGGCCATTTGATTCTGACTTCGTCCGTGTCCA
AGAGATGGTACCGTCTTATGTGGGATTTATGATTATTAGCGTTCGACGGA
CGTCGCCCGAGCTCTGTTCAGTTTGTGACGGGGCAGGTTTTCAGTGAAAA
ATACGGTCGACGCTCGGACGAATTTGAAATTCGGCGAGCTTCCGGCGATC
TACAAAATCGGCCGATGCTCGCATGAATTGTGACGCCGGCTTAACGACAA
CCCTAACATTAGTACAGTATATGGTATGGAGTACTTTATCAGTATCCGCC
AAATTTCAACTCATTGTGGTTATTACGTACTTTCCAGTCGAAGTCGGCTT
TTGAAAATCAGTAGGTAAGTGGAGGAAAAAAACAAGGATTAACTATGATC
AGAGCTGTGTGGGTCAAGTTCATTATATCATGAATTCGCGTGAAATGTTC
GAAGACATCGTAAAATTCTTGATGAGAATTCCCTTGGTATTTCAATCAAA
GAAAAAAGTGGCTATCTTACTTTCAGCAGAGCAAGTTTGCCCGCACACCT
CAGGTCTCAGCTCAATTGTCCATGTTTTTTTCCCTTCTCTCTCACCTAAC
GTTACTGGGTGTTGCCTGCAAAGTAATGATACGCCAAAAATAGTTACTCA
AGCAACTGGATAAAATTTTGAAACAGTTCGCCAAAAATAGTTACTCAAGC
AACTGGATAAAATTTTCAAAATTTTATCCAGTTGCTTGAGTAACTATTTT
TGGCGTATCTTATTACCTGGATGTCTAACCTTCATCAACGAATGATAATA
ATGATTTGAATTTTTGCAGGCATCCATAGAAGGCTTTATACTTGCCCCCA
AATTTCAGCTGTGCACCTTATTTCTTGGTGAGGCGCAGAACTTATCTTGT
ATCTCTCCACACAGACCAGGCTACCGTGACCATTATGGTGACGGATGCTG
CCGAACCGCCGACCTTCTCCAACCTGCCCGCCTCCCGGGCCGTACCGGAG
GACGTGTCGGTGGGCACGGCGGTCTACACGCTGAGCGCCGCCGACCCGGA
CGAGCCCGCCCAGACCCTGACGTACACTATCGTCAGCCAGACGCCGTCGG
A Coding sequence (CDS) from alignment at Sc0000124:487670..495720- >transcript:BL96779_cuf10 ID=transcript:BL96779_cuf10|Name=transcript:BL96779_cuf10|organism=Branchiostoma lanceolatum|type=CDS|length=2040bp|location=Sequence derived from alignment at Sc0000124:487670..495720- (Branchiostoma lanceolatum)
ATGGCTAAGACTTTCATCAGGTGTCTGCTACTTCTGATCTTGACGACAGC
ATGCTCAGCGGTGACGTTCACCTACAGCAGTGCGTCATATACCGTAGGCG
AGGACGCCTCGGCGGGCGATTACGTCATCACGTCTGGTGACGTCACAGTG
ACGTGGACAACCAGCGGCGGGACCACGCCGTTCGAGATCATCAGTCCCGT
CGGCTCACCTTTCCAAGTGGACTCCACGGGGGCGGTGACCGTGGCCTCGT
CCTCCAGTTTGGATTACGAGACTACCAGCATGTACGTAGTGACTGTACGG
GCGAACGACAACACCGGCGTCACAGACCAGGCTACCGTGACCATTATGGT
GACGGATGCTGCCGAACCGCCGACCTTCTCCAACCTGCCCGCCTCCCGGG
CCGTACCGGAGGACGTGTCGGTGGGCACGGCGGTCTACACGCTGAGCGCC
GCCGACCCGGACGAGCCCGCCCAGACCCTGACGTACACTATCGTCAGCCA
GACGCCGTCGATGGCTAAGACTTTCATCAGGTGTCTGCTACTTCTGATCT
TGACGACAGCATGCTCAGCGGTGACGTTCACCTACAGCAGTGCGTCATAT
ACCGTAGGCGAGGACGCCTCGGCGGGCGATTACGTCATCACGTCTGGTGA
CGTCACAGTGACGTGGACAACCAGCGGCGGGACCACGCCGTTCGAGATCA
TCAGTCCCGTCGGCTCACCTTTCCAAGTGGACTCCACGGGGGCGGTGACC
GTGGCCTCGTCCTCCAGTTTGGATTACGAGACTACCAGCATGTACGTAGT
GACTGTACGGGCGAACGACAACACCGGCGTCACAGACCAGGCTACCGTGA
CCATTATGGTGACGGATGCTGCCGAACCGCCGACCTTCTCCAACCTGCCC
GCCTCCCGGGCCGTACCGGAGGACGTGTCGGTGGGCACGGCGGTCTACAC
GCTGAGCGCCGCCGACCCGGACGAGCCCGCCCAGACCCTGACGTACACTA
TCGTCAGCCAGACGCCGTCGATGGCTAAGACTTTCATCAGGTGTCTGCTA
CTTCTGATCTTGACGACAGCATGCTCAGCGGTGACGTTCACCTACAGCAG
TGCGTCATATACCGTAGGCGAGGACGCCTCGGCGGGCGATTACGTCATCA
CGTCTGGTGACGTCACAGTGACGTGGACAACCAGCGGCGGGACCACGCCG
TTCGAGATCATCAGTCCCGTCGGCTCACCTTTCCAAGTGGACTCCACGGG
GGCGGTGACCGTGGCCTCGTCCTCCAGTTTGGATTACGAGACTACCAGCA
TGTACGTAGTGACTGTACGGGCGAACGACAACACCGGCGTCACAGACCAG
GCTACCGTGACCATTATGGTGACGGATGCTGCCGAACCGCCGACCTTCTC
CAACCTGCCCGCCTCCCGGGCCGTACCGGAGGACGTGTCGGTGGGCACGG
CGGTCTACACGCTGAGCGCCGCCGACCCGGACGAGCCCGCCCAGACCCTG
ACGTACACTATCGTCAGCCAGACGCCGTCGATGGCTAAGACTTTCATCAG
GTGTCTGCTACTTCTGATCTTGACGACAGCATGCTCAGCGGTGACGTTCA
CCTACAGCAGTGCGTCATATACCGTAGGCGAGGACGCCTCGGCGGGCGAT
TACGTCATCACGTCTGGTGACGTCACAGTGACGTGGACAACCAGCGGCGG
GACCACGCCGTTCGAGATCATCAGTCCCGTCGGCTCACCTTTCCAAGTGG
ACTCCACGGGGGCGGTGACCGTGGCCTCGTCCTCCAGTTTGGATTACGAG
ACTACCAGCATGTACGTAGTGACTGTACGGGCGAACGACAACACCGGCGT
CACAGACCAGGCTACCGTGACCATTATGGTGACGGATGCTGCCGAACCGC
CGACCTTCTCCAACCTGCCCGCCTCCCGGGCCGTACCGGAGGACGTGTCG
GTGGGCACGGCGGTCTACACGCTGAGCGCCGCCGACCCGGACGAGCCCGC
CCAGACCCTGACGTACACTATCGTCAGCCAGACGCCGTCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000124 | genome | Sc0000124:487670..495720 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96779_cuf10 |
| Biotype | protein_coding |
|
