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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96773_cuf1 >transcript:BL96773_cuf1-protein ID=transcript:BL96773_cuf1-protein|Name=transcript:BL96773_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=254bp
HHTPSMPWKLLLPTLVMFVAIRGAVGQGPYPPAPPAPLPTAPPPPNHDGY
PSPPVPPPEPQPEPEPNANPNLPNGPGPACSVDIVFVVDESSSISSSWFD
RAKEFMIYFQGCFSRLHDVWVGVIPYHCVPRTYQRLSPAFGTFMFDQLMQ
KGGLSRPGLAIRFMKDTSDFRDGVPRAAVVLTDGQSEDPAQVMDIAAQAD
AARAAGIELYAVGVGDPVDYRALEAIGGSSDHVFRSDMPCKVAYRILADL
CKLA Run BLAST on NCBI mRNA from alignment at Sc0000150:448728..454218- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96773_cuf1 ID=transcript:BL96773_cuf1|Name=transcript:BL96773_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5491bp|location=Sequence derived from alignment at Sc0000150:448728..454218- (Branchiostoma lanceolatum)
CACCACACGCCAAGCATGCCGTGGAAACTGTTGCTGCCCACTCTGGTGAT
GTTCGTCGCCATCCGCGGGGCAGTCGGCCAAGGACCATACCCGCCAGCCC
CGCCGGCACCGCTGCCGACGGCGCCACCCCCGCCCAACCATGACGGATAC
CCGTCGCCACCCGTCCCGCCGCCGGAACCCCAACCCGAGCCCGAGCCTAA
CGCCAACCCGAACCTGCCCAATGGCCCCGGCCCAGGTATTTGTATTTATT
GACAATGAAAGACAAGTCATTACACTGGGTCAGCCTAGGCAGCTTTCGCT
GGTAACGGCTGACCCACAAATACAGACAAACATACAGTAAGATCATTACA
CTATTATAATACATACATAGTTAATGCGATACAATACAATGCATAAATAC
AGTATAAAATCATTTGACTCAGTAACTACCATGAAAATATATACATTAAC
ATAATAAAATTATTGGGGGAACGGTCTAAAATATCATAGTCTATAGCATT
GCGGTGGAATAGATGGAAGGTTGATAGGAGGTAAATTTAAATCAGGACAA
CAGGTGGGATTTGCATTGGGCCTTGAATATGCTCAGTGTGGGTATTTCAT
CATTGCTTATTTTTATCTATTTCATTTCAGCTTCGTTACATTGAATTTTT
AACGATAGAAATGAAAGAAATGCGGCTGTAGCTATAAGAAACAGGAATAT
TCATTTACATTTTACCTGAGTTTGTATATGGATCCGGATCTACCACTCCT
ATTAAGGGGAGACAGCAGACATTGTGCGTCTGTTTATTTACACTTGTTTG
TTTATTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGATTGGTTGGT
TGGTTGGTTGGTTGGTTAGTTGGTTGGTTGGTTGGTTAGTTGGTTGGTTG
GTTGGTTGGTTGATTAGTTGGTTGGTTGATTAGTTGGTTGGTTGGTTAGT
TGGTACATCGTGACCATACGTAAGACCAGACTGATAAAGTGCAGTGTGAT
CTTTAACACGTTCGAGGGGCTTCTCTCCTGCCCTTCTTTACGCCCGAGGG
GACGTCCCTAAACGAAGCTAGGTACTCATTTTCACCTGGGTCGAGGGAGG
AAATCGGTATAAATTACCTTTCGTAAGGGCACAACGTAACATACATGTAG
GTACCTGCTATGGATTTGAACCCAGTACCTTTAGATTCTTAGTCAACAAC
TCTAACCACAAGACCACCTTGCCACTTTTTCTAAACATATATGATTTTGA
GAGGGTCCCTGTATGGGGGTGTCTGATGCCGGATATGTAGATATACAGAA
TGTGCTGCATTGCTGAACCAGTCATAATTGCCTTGAAGAAGGTGACAGAT
GGTCACCAAAACGTCGGTGGAATAAATATCTTGGTTGTGTAAAAAACAGT
AGTCTTGTTTATTTAGTGACTTACCAACCTGATGAAATTATTCACAAATG
TAGATACAGTTGAAAGGAATAGCTGACCCGAGGCCGAGTTAACATGGGAT
TTCACCACTTCTTTGGAAGCAGGATAAATCACTGGCGTTACTGGCGTCAC
TGATTATACGTGTATTACAAACTCTTGACCAAAGGCTGATTACAAGTTAC
AGCTTCGGTCTGTCACTCGGCTTCAGTCAGAGGCAAATAAAGATCATGTA
AATGGTGACAAATAAAACCATGCAACAACTAGTGGCTGCTTCATGTGTTT
ATGATACTCTCGCAATACAATTATGTGCAAACGATTGTCATAGCTGTAGT
TGGCTACAGATCAAGATTTTTGTGCTTGAGTCTAATGACGGTGCAATTAT
GTGAAAATTGGCGGTGATTTTGGTCACTAGTTGACTCGATGTAGGCTTGT
GTTTTCTTTAAAAGCGATGAAAGACCAAAATGCGCATTTTCTAACATAAT
ACGTGTGTCCTGTGGTTCTGATAGTTTTCCTCCAAACGAAAATGTAAAAA
GAATGAATATTCTACAGTGGCTGCTTTGAATAATACGCCATTTTCAAGGT
GGTTTATATCGCGGTACCAGGTACTTTGGAAATCTGCTCCAAACATTTCC
TTACTTACATCTACATGACAGATTATCCCATGGACACCTATTCAACATCT
ATGTAACAGTTCAACATCTATTTCACGTTCTGAAACTACAGCCTGCTCCG
TGGACATCGTCTTCGTTGTCGACGAATCCTCCAGCATATCGAGCTCTTGG
TTCGACCGCGCCAAGGAATTCATGATCTACTTCCAAGGCTGCTTTTCACG
GCTTCATGACGTCTGGGTGAGACTCCATAATTATCATAATAATGATAATA
ATCTTTATTGCATACTAGTATTTATTCCCCAGGAGGATAAATGCGTACGT
AGGAGACCAAACACGGTGTAATGGATACGAGAGAATGAAATAATGATAAT
AGCGTTAACATTTAAATGTAATATATATACCAAACAGTTTACAAATGTAC
TACCGTATATCTTAGTTCTAGCGGCTTCTTCTCTCTTTTTAATCACATGG
CAATATGATTGCACACATCGTCCTTTCCATAAACATTAGTGCATGGCATC
AAGTACTTAAAGGTATCCTATACTGTCAAGCTGAATTGATTTGAACAGAG
ACTGGCGCTCGTTTTCATACAATACACAGTCTAGTAAGAAGTGCATCTTA
TCTTCAATACGTGACAGAATTTATATAATCTATCTTGTAGAGGGGTACGG
CTATGATTCTGCATGTAAGGGATGGTCGCTAATCCGAAGTTTACACTTGT
TATCATTTACATCGTAGCCCCTCCTCCAAAAGCATCTACTTTCGTTGGCA
ATGGCTGACACGCACCCGAAAACAAACGCATCCCTTCTAACCCATGGGTC
AACCACCCACAACCCTGCTACGGATGAAATAAACTCTTAAGAGCATTTCA
CTCATACATTGCGACATCTAAAGGGTTTGATTACCCTAATGTTCCAGCTG
ATACACGCACCTCGCCCAATGTACTGCTTATTTGAAATTTGCTGTACTTT
TATATTTTATTTTATCTATTCGCAATTATCTTTTGTATTGTATATATTTG
TAATGTGTTGGGCGCAATATCTTCATTGCTGCCTGGGGTTCCACAATGTA
TTGTGTTGATGCAATTTCAATAAAGACGAGTCAAAACATAACCTGACACT
TTTTTAACATGTAATATTTTCGATATTCTTCACACTTTTCTTGATTTTAC
AAGTACATGATTGAGCTTACACTAACTTGTATTGTTTACGTTTACGTTAT
CCATCCTGCCTTTTTATGTATGTTGAATTGTGTTTTTACTCAACAGTATT
GTTTTATATCTATATTCTTTTGTTTTTGAGGAGTGGAGTTGTCATAAAGC
CGGTGTCACAATTCATGCGAGCATCGCCCGACTTTGTAGATCGCCCGAAG
CTCGCCGAATTTCAAAATCGCCCGAGCGTCGACCGTATTTTCCAATGAAA
ATCTCGGGTGACGTCCGTCGAACACTAAAAACTAAAAATCGCCCATGAGA
TGGTACCATCTCTTGGACATGGACGAAGTCAGTATCGACTAACCTGGTAA
AAGGGCCAATATTTGGATCAACTTTTAGTTCTGAAAATCGCCCGAAGCCC
GCGTAATCGACAGAACGTCGGCCGTACTTCGGCCGAAAATGCACATTTGA
AGCTCGCCAACACGTCGGCCGAGCTGAATGTCTTATTTGTGACGGGGACT
TAAGCACTGTGCTTTTTGGCCGATCCCCAATGAATGTATGAGAATAAAAT
GATTCACCTTCCAAGCGAAGATAAGAATGGATAACATTATTTTCCTATCG
ATTATGACACACAATTAGGTTGGAGTTATTCCATACCACTGCGTACCGAG
GACCTACCAACGTTTGAGCCCAGCTTTCGGCACGTTCATGTTCGACCAGC
TGATGCAGAAGGGAGGCCTGAGCCGACCCGGACTGGCTATCCGCTTTATG
AAGGACACGGTAAGTCCAACATGTCCGGAAATATTGTTTGTTGTTTGTTG
TTTCTGTTTTATTTAGCCAGGGTGGCCCAACTCAGTGCACTACACTGCTT
TGCAGTGGGACCCTGGATAACACAATACAATCAGTACAAAACATAAGTCT
AAAATACATATACACCGATACATACAAACTTTACAGAGCCATAATCCATA
CTCGTAGTCCATATTCCGTTCCTATCGTAAGGTGAGGTCAGAGGTCAGTT
CATTTGTTTCAACATCCTCTTAAACGTTACACTGTTTGGAGCATTTTTCA
TTGTTACTGATATTGATACTAATAACCTTTTTTTTAGTTACAGAATGATC
TTTGTTGCATTTTCATGACAATATGGGCTAAATGCAGTAATCATATTATT
ATAACAACAGGAAGAATATCATTGCCTCTAGTTAAGCATGAAAGTCAAAA
GCTGCAATTCTCTACTGAAGTGGATGATTACTGGTTCGATATTGAGGCTA
TATGCTGCTATTTCCATTCAAACATTTGTAACTTTCCCAAGTGTAATGTA
GCGACCAAGTGAAACTGCTGCGTTATAATCTTTACCACATTTAACGTTAC
ATGTGAAGCATACAATAAAAACTATAGCACTTAGAATTTGTGATGGTTCA
CGTGTCTGTTTAGTCATTATTCCTTTCTTTATCTATTGACTCGTTTGTTT
GCTTGTTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTACTTTC
TCTGTTTAGTCCGATTTCCGTGACGGGGTCCCTCGGGCGGCGGTAGTCTT
GACAGACGGACAAAGCGAAGATCCAGCTCAGGTAGGAAGAAATCTGTTAA
CAGCTGATTTGTTCAGCGCAACATCAACATCAAGGTCACATACCTGGGGG
CCAAAATCAACCTTGACCTTTGTCTTACCAAGACCTGTCGACATACCACA
TATCATCACAATACATCCTGGGGTTCTTAAGTTATGCTGACTAGAAAAAT
CCTGTATCTGTAGCTATGTAGCACTTCGCCTTGTCAGTGAGCAAGCTACA
AATGCAGATTAATTAAACAAATACGTTTATTGCAAATTCATGCCCGTAGA
CTAATTGCATGTTGACAACAATGTCGAAGTACAAATGTAAAGTAAAAACA
TAATTAAGGCATACATGTGATACAAGATCATACTATATTGCTAGTCTACA
ATAAGTTTCTATATCTATGTTTCTATTGCTGGGTTTGATTGCTTCTTTGA
GAGCAGTGGGAAATGAAAAGTTCCACACTTTCAATGATGAGTGGGTTGGA
ATATGAGTTTCTGTGTATTTCTCAATCTATAAAAGCTATCATCTTCTTAG
GTAATGGACATTGCGGCGCAAGCTGACGCGGCAAGGGCCGCCGGAATCGA
GCTGTACGCTGTGGGTGTCGGAGACCCGGTGGACTACCGTGCGCTCGAGG
CCATCGGCGGGAGCTCCGACCACGTGTTCAGAAGCGACATGCCCTGCAAA
GTCGCCTACCGGATACTGGCGGACCTGTGCAAACTGGCAGG Coding sequence (CDS) from alignment at Sc0000150:448728..454218- >transcript:BL96773_cuf1 ID=transcript:BL96773_cuf1|Name=transcript:BL96773_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3810bp|location=Sequence derived from alignment at Sc0000150:448728..454218- (Branchiostoma lanceolatum)
CACCACACGCCAAGCATGCCGTGGAAACTGTTGCTGCCCACTCTGGTGAT
GTTCGTCGCCATCCGCGGGGCAGTCGGCCAAGGACCATACCCGCCAGCCC
CGCCGGCACCGCTGCCGACGGCGCCACCCCCGCCCAACCATGACGGATAC
CCGTCGCCACCCGTCCCGCCGCCGGAACCCCAACCCGAGCCCGAGCCTAA
CGCCAACCCGAACCTGCCCAATGGCCCCGGCCCAGCCTGCTCCGTGGACA
TCGTCTTCGTTGTCGACGAATCCTCCAGCATATCGAGCTCTTGGTTCGAC
CGCGCCAAGGAATTCATGATCTACTTCCAAGGCTGCTTTTCACGGCTTCA
TGACGTCTGGGTTGGAGTTATTCCATACCACTGCGTACCGAGGACCTACC
AACGTTTGAGCCCAGCTTTCGGCACGTTCATGTTCGACCAGCTGATGCAG
AAGGGAGGCCTGAGCCGACCCGGACTGGCTATCCGCTTTATGAAGGACAC
GTCCGATTTCCGTGACGGGGTCCCTCGGGCGGCGGTAGTCTTGACAGACG
GACAAAGCGAAGATCCAGCTCAGGTAATGGACATTGCGGCGCAAGCTGAC
GCGGCAAGGGCCGCCGGAATCGAGCTGTACGCTGTGGGTGTCGGAGACCC
GGTGGACTACCGTGCGCTCGAGGCCATCGGCGGGAGCTCCGACCACGTGT
TCAGAAGCGACATGCCCTGCAAAGTCGCCTACCGGATACTGGCGGACCTG
TGCAAACTGGCACACCACACGCCAAGCATGCCGTGGAAACTGTTGCTGCC
CACTCTGGTGATGTTCGTCGCCATCCGCGGGGCAGTCGGCCAAGGACCAT
ACCCGCCAGCCCCGCCGGCACCGCTGCCGACGGCGCCACCCCCGCCCAAC
CATGACGGATACCCGTCGCCACCCGTCCCGCCGCCGGAACCCCAACCCGA
GCCCGAGCCTAACGCCAACCCGAACCTGCCCAATGGCCCCGGCCCAGCCT
GCTCCGTGGACATCGTCTTCGTTGTCGACGAATCCTCCAGCATATCGAGC
TCTTGGTTCGACCGCGCCAAGGAATTCATGATCTACTTCCAAGGCTGCTT
TTCACGGCTTCATGACGTCTGGGTTGGAGTTATTCCATACCACTGCGTAC
CGAGGACCTACCAACGTTTGAGCCCAGCTTTCGGCACGTTCATGTTCGAC
CAGCTGATGCAGAAGGGAGGCCTGAGCCGACCCGGACTGGCTATCCGCTT
TATGAAGGACACGTCCGATTTCCGTGACGGGGTCCCTCGGGCGGCGGTAG
TCTTGACAGACGGACAAAGCGAAGATCCAGCTCAGGTAATGGACATTGCG
GCGCAAGCTGACGCGGCAAGGGCCGCCGGAATCGAGCTGTACGCTGTGGG
TGTCGGAGACCCGGTGGACTACCGTGCGCTCGAGGCCATCGGCGGGAGCT
CCGACCACGTGTTCAGAAGCGACATGCCCTGCAAAGTCGCCTACCGGATA
CTGGCGGACCTGTGCAAACTGGCACACCACACGCCAAGCATGCCGTGGAA
ACTGTTGCTGCCCACTCTGGTGATGTTCGTCGCCATCCGCGGGGCAGTCG
GCCAAGGACCATACCCGCCAGCCCCGCCGGCACCGCTGCCGACGGCGCCA
CCCCCGCCCAACCATGACGGATACCCGTCGCCACCCGTCCCGCCGCCGGA
ACCCCAACCCGAGCCCGAGCCTAACGCCAACCCGAACCTGCCCAATGGCC
CCGGCCCAGCCTGCTCCGTGGACATCGTCTTCGTTGTCGACGAATCCTCC
AGCATATCGAGCTCTTGGTTCGACCGCGCCAAGGAATTCATGATCTACTT
CCAAGGCTGCTTTTCACGGCTTCATGACGTCTGGGTTGGAGTTATTCCAT
ACCACTGCGTACCGAGGACCTACCAACGTTTGAGCCCAGCTTTCGGCACG
TTCATGTTCGACCAGCTGATGCAGAAGGGAGGCCTGAGCCGACCCGGACT
GGCTATCCGCTTTATGAAGGACACGTCCGATTTCCGTGACGGGGTCCCTC
GGGCGGCGGTAGTCTTGACAGACGGACAAAGCGAAGATCCAGCTCAGGTA
ATGGACATTGCGGCGCAAGCTGACGCGGCAAGGGCCGCCGGAATCGAGCT
GTACGCTGTGGGTGTCGGAGACCCGGTGGACTACCGTGCGCTCGAGGCCA
TCGGCGGGAGCTCCGACCACGTGTTCAGAAGCGACATGCCCTGCAAAGTC
GCCTACCGGATACTGGCGGACCTGTGCAAACTGGCACACCACACGCCAAG
CATGCCGTGGAAACTGTTGCTGCCCACTCTGGTGATGTTCGTCGCCATCC
GCGGGGCAGTCGGCCAAGGACCATACCCGCCAGCCCCGCCGGCACCGCTG
CCGACGGCGCCACCCCCGCCCAACCATGACGGATACCCGTCGCCACCCGT
CCCGCCGCCGGAACCCCAACCCGAGCCCGAGCCTAACGCCAACCCGAACC
TGCCCAATGGCCCCGGCCCAGCCTGCTCCGTGGACATCGTCTTCGTTGTC
GACGAATCCTCCAGCATATCGAGCTCTTGGTTCGACCGCGCCAAGGAATT
CATGATCTACTTCCAAGGCTGCTTTTCACGGCTTCATGACGTCTGGGTTG
GAGTTATTCCATACCACTGCGTACCGAGGACCTACCAACGTTTGAGCCCA
GCTTTCGGCACGTTCATGTTCGACCAGCTGATGCAGAAGGGAGGCCTGAG
CCGACCCGGACTGGCTATCCGCTTTATGAAGGACACGTCCGATTTCCGTG
ACGGGGTCCCTCGGGCGGCGGTAGTCTTGACAGACGGACAAAGCGAAGAT
CCAGCTCAGGTAATGGACATTGCGGCGCAAGCTGACGCGGCAAGGGCCGC
CGGAATCGAGCTGTACGCTGTGGGTGTCGGAGACCCGGTGGACTACCGTG
CGCTCGAGGCCATCGGCGGGAGCTCCGACCACGTGTTCAGAAGCGACATG
CCCTGCAAAGTCGCCTACCGGATACTGGCGGACCTGTGCAAACTGGCACA
CCACACGCCAAGCATGCCGTGGAAACTGTTGCTGCCCACTCTGGTGATGT
TCGTCGCCATCCGCGGGGCAGTCGGCCAAGGACCATACCCGCCAGCCCCG
CCGGCACCGCTGCCGACGGCGCCACCCCCGCCCAACCATGACGGATACCC
GTCGCCACCCGTCCCGCCGCCGGAACCCCAACCCGAGCCCGAGCCTAACG
CCAACCCGAACCTGCCCAATGGCCCCGGCCCAGCCTGCTCCGTGGACATC
GTCTTCGTTGTCGACGAATCCTCCAGCATATCGAGCTCTTGGTTCGACCG
CGCCAAGGAATTCATGATCTACTTCCAAGGCTGCTTTTCACGGCTTCATG
ACGTCTGGGTTGGAGTTATTCCATACCACTGCGTACCGAGGACCTACCAA
CGTTTGAGCCCAGCTTTCGGCACGTTCATGTTCGACCAGCTGATGCAGAA
GGGAGGCCTGAGCCGACCCGGACTGGCTATCCGCTTTATGAAGGACACGT
CCGATTTCCGTGACGGGGTCCCTCGGGCGGCGGTAGTCTTGACAGACGGA
CAAAGCGAAGATCCAGCTCAGGTAATGGACATTGCGGCGCAAGCTGACGC
GGCAAGGGCCGCCGGAATCGAGCTGTACGCTGTGGGTGTCGGAGACCCGG
TGGACTACCGTGCGCTCGAGGCCATCGGCGGGAGCTCCGACCACGTGTTC
AGAAGCGACATGCCCTGCAAAGTCGCCTACCGGATACTGGCGGACCTGTG
CAAACTGGCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000150 | genome | Sc0000150:448728..454218 - |
Properties
| Property Name | Value |
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| Transcript id | BL96773_cuf1 |
| Biotype | protein_coding |
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