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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96765_cuf3 >transcript:BL96765_cuf3-protein ID=transcript:BL96765_cuf3-protein|Name=transcript:BL96765_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=318bp
APGGRETPPEPGPPDKPADTSGSLSAAEEGLVERWTQALVQRMSPVVTRD
DQRCQACQTSEGNLADFPPVTRGNRRCQACRTIEENMLDSVLAASPGIGA
AARERGAARRLSVTEEDMLDRWADRLAERIVSFSQPQVTSTPVKVKHKQR
TTRSPDKQDLQTCRADRYERRLAECLADTALPVVPAGEAAQVSPCTPGGS
SSRDQHSESPCQMCWEAANDSLAAAQAQIRRVASGTPSGVGPAVQRTGGT
QAAATPGGSRGRCSHSARSCRQGCPGCLRVVGELAFQLDMQILQYVFQRR
RLYGVTLRNIADKIREEA Run BLAST on NCBI mRNA from alignment at xpSc0039759:14372..16241+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96765_cuf3 ID=transcript:BL96765_cuf3|Name=transcript:BL96765_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=1870bp|location=Sequence derived from alignment at xpSc0039759:14372..16241+ (Branchiostoma lanceolatum)
CAGCCCCGGGGGGTCGGGAGACGCCGCCAGAGCCCGGCCCTCCCGACAAA
CCCGCGGACACCAGCGGGAGCCTGTCCGCCGCCGAGGAGGGGCTGGTGGA
ACGCTGGACGCAGGCGCTCGTACAGCGCATGTCCCCGGTCGTAACCAGGG
ACGACCAGAGATGCCAGGCGTGTCAGACGAGCGAGGGGAACCTGGCGGAC
TTCCCGCCTGTAACCAGGGGCAACCGCCGGTGTCAGGCATGTCGGACGAT
CGAGGAGAACATGTTGGACTCTGTCCTGGCCGCGAGCCCGGGGATTGGAG
CGGCCGCGCGGGAGAGAGGAGCGGCCCGGCGCCTGTCCGTTACCGAGGAG
GACATGTTGGACCGGTGGGCGGACCGGCTGGCCGAGAGGATCGTCAGCTT
CAGTCAGCCTCAGGTGACCTCTACTCCCGTCAAGGTCAAGCACAAGCAAA
GGACGACAAGGTCTCCAGATAAACAAGATTTGCAAAGTACGTCTGTTGTT
TTTTTGTGTTAATATGATTGTTGTGCATTGGTCCAAATGGTTTTTTTTTT
ACATTGGTATTGTTATCCGACCACTTCCTTTAACACATGTTGGACTCCCA
GCATGCCGTGCGGACCGGTACGAGCGCCGCCTGGCGGAGTGTCTGGCCGA
CACAGCCCTTCCCGTGGTGCCTGCCGGGGAGGCTGCACAGGTGTCCCCGT
GTACCCCTGGTGGATCCTCAAGCAGAGGTGAGAGATATCACACGGACACT
CCAGCAGAAGTACCATCTAAGCAGCTGTTCAGAGGGTGTCGTGACATTTT
CTGGCCGCCCCTTCTTTGTTACCATAATCAAACCAGACAAACGGCAGGGC
CAGAAAAAGTGACGATTTTTCCTCCCAACATCTATCAAATTGAAGATTTA
GTAGCCGAACTCGATAGTTTTTAGAATGTGTTTTTTTTAGGACACCATAT
CCGATGCCGACCTTTGGGTTCTCTGTCTGACTATGTCTATGTGTGTGCCA
GACTGTCTGTGTTTGCTTCTGCGATCGCAAATGCTTGTGCACGGCGTTTC
CCTACAGCCTCGGTGTTGCGCTGTTTGTCTGGGACTGAAGGGCCGAAAAG
CAAGGAAAAGGGATGAATGAAGCCTATCATCTCTGACTGTCTTGTTTTAA
CATCATCAGACCAGCATTCCGAGTCGCCGTGCCAGATGTGCTGGGAGGCG
GCGAACGACAGTCTGGCGGCGGCGCAGGCGCAGATCCGCCGGGTCGCCAG
CGGGACACCTAGCGGAGTGGGACCGGCAGTGCAGCGGACAGGTGTGTGAT
TTCTATCAAATCGTCATTAATGTCGCAAGCTTGTTCTGAAAGAGACTTTG
CTTTCTAATGCTTTGAGCCTTGGGTTGCGCTGTGTGACTGCATGTAGTGG
GAGAAATATCCCAAACCTGGGCATGGCTCTGGATATTCTACAGTTTGGGA
CACAAGAAGCTCACCGTTTCATTCTCCGCAGCAGGTGGCACACGTACACC
AGCGACCTCTGGCGGTTCGCGCGGGCGGTGCAGCCACAGCGTACGGAGCT
GCCGGCCGGGGTGCCTGAGGGTGCTGGTGGAGATATCCCAAACGGTATCT
GACCATGGTTCTAGATAATGTACAGTTGAGTCGCATTTTTTCATCTTCCC
CAGAAGGTGGCACACAGGCAGCAGCGACCCCTGGCGGTTCTCGCGGGCGG
TGCAGCCACAGCGCGCGGAGCTGCCGGCAGGGCTGTCCCGGGTGCCTGCG
GGTGGTGGGCGAGCTCGCCTTCCAGCTGGACATGCAGATCCTGCAGTACG
TGTTCCAGCGGAGGCGGCTGTACGGCGTCACGCTCAGGAACATCGCGGAC
AAGATACGGGAGGAGGCCGA Coding sequence (CDS) from alignment at xpSc0039759:14372..16241+ >transcript:BL96765_cuf3 ID=transcript:BL96765_cuf3|Name=transcript:BL96765_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3816bp|location=Sequence derived from alignment at xpSc0039759:14372..16241+ (Branchiostoma lanceolatum)
GCCCCGGGGGGTCGGGAGACGCCGCCAGAGCCCGGCCCTCCCGACAAACC
CGCGGACACCAGCGGGAGCCTGTCCGCCGCCGAGGAGGGGCTGGTGGAAC
GCTGGACGCAGGCGCTCGTACAGCGCATGTCCCCGGTCGTAACCAGGGAC
GACCAGAGATGCCAGGCGTGTCAGACGAGCGAGGGGAACCTGGCGGACTT
CCCGCCTGTAACCAGGGGCAACCGCCGGTGTCAGGCATGTCGGACGATCG
AGGAGAACATGTTGGACTCTGTCCTGGCCGCGAGCCCGGGGATTGGAGCG
GCCGCGCGGGAGAGAGGAGCGGCCCGGCGCCTGTCCGTTACCGAGGAGGA
CATGTTGGACCGGTGGGCGGACCGGCTGGCCGAGAGGATCGTCAGCTTCA
GTCAGCCTCAGGTGACCTCTACTCCCGTCAAGGTCAAGCACAAGCAAAGG
ACGACAAGGTCTCCAGATAAACAAGATTTGCAAACATGCCGTGCGGACCG
GTACGAGCGCCGCCTGGCGGAGTGTCTGGCCGACACAGCCCTTCCCGTGG
TGCCTGCCGGGGAGGCTGCACAGGTGTCCCCGTGTACCCCTGGTGGATCC
TCAAGCAGAGACCAGCATTCCGAGTCGCCGTGCCAGATGTGCTGGGAGGC
GGCGAACGACAGTCTGGCGGCGGCGCAGGCGCAGATCCGCCGGGTCGCCA
GCGGGACACCTAGCGGAGTGGGACCGGCAGTGCAGCGGACAGGTGGCACA
CAGGCAGCAGCGACCCCTGGCGGTTCTCGCGGGCGGTGCAGCCACAGCGC
GCGGAGCTGCCGGCAGGGCTGTCCCGGGTGCCTGCGGGTGGTGGGCGAGC
TCGCCTTCCAGCTGGACATGCAGATCCTGCAGTACGTGTTCCAGCGGAGG
CGGCTGTACGGCGTCACGCTCAGGAACATCGCGGACAAGATACGGGAGGA
GGCCGCCCCGGGGGGTCGGGAGACGCCGCCAGAGCCCGGCCCTCCCGACA
AACCCGCGGACACCAGCGGGAGCCTGTCCGCCGCCGAGGAGGGGCTGGTG
GAACGCTGGACGCAGGCGCTCGTACAGCGCATGTCCCCGGTCGTAACCAG
GGACGACCAGAGATGCCAGGCGTGTCAGACGAGCGAGGGGAACCTGGCGG
ACTTCCCGCCTGTAACCAGGGGCAACCGCCGGTGTCAGGCATGTCGGACG
ATCGAGGAGAACATGTTGGACTCTGTCCTGGCCGCGAGCCCGGGGATTGG
AGCGGCCGCGCGGGAGAGAGGAGCGGCCCGGCGCCTGTCCGTTACCGAGG
AGGACATGTTGGACCGGTGGGCGGACCGGCTGGCCGAGAGGATCGTCAGC
TTCAGTCAGCCTCAGGTGACCTCTACTCCCGTCAAGGTCAAGCACAAGCA
AAGGACGACAAGGTCTCCAGATAAACAAGATTTGCAAACATGCCGTGCGG
ACCGGTACGAGCGCCGCCTGGCGGAGTGTCTGGCCGACACAGCCCTTCCC
GTGGTGCCTGCCGGGGAGGCTGCACAGGTGTCCCCGTGTACCCCTGGTGG
ATCCTCAAGCAGAGACCAGCATTCCGAGTCGCCGTGCCAGATGTGCTGGG
AGGCGGCGAACGACAGTCTGGCGGCGGCGCAGGCGCAGATCCGCCGGGTC
GCCAGCGGGACACCTAGCGGAGTGGGACCGGCAGTGCAGCGGACAGGTGG
CACACAGGCAGCAGCGACCCCTGGCGGTTCTCGCGGGCGGTGCAGCCACA
GCGCGCGGAGCTGCCGGCAGGGCTGTCCCGGGTGCCTGCGGGTGGTGGGC
GAGCTCGCCTTCCAGCTGGACATGCAGATCCTGCAGTACGTGTTCCAGCG
GAGGCGGCTGTACGGCGTCACGCTCAGGAACATCGCGGACAAGATACGGG
AGGAGGCCGCCCCGGGGGGTCGGGAGACGCCGCCAGAGCCCGGCCCTCCC
GACAAACCCGCGGACACCAGCGGGAGCCTGTCCGCCGCCGAGGAGGGGCT
GGTGGAACGCTGGACGCAGGCGCTCGTACAGCGCATGTCCCCGGTCGTAA
CCAGGGACGACCAGAGATGCCAGGCGTGTCAGACGAGCGAGGGGAACCTG
GCGGACTTCCCGCCTGTAACCAGGGGCAACCGCCGGTGTCAGGCATGTCG
GACGATCGAGGAGAACATGTTGGACTCTGTCCTGGCCGCGAGCCCGGGGA
TTGGAGCGGCCGCGCGGGAGAGAGGAGCGGCCCGGCGCCTGTCCGTTACC
GAGGAGGACATGTTGGACCGGTGGGCGGACCGGCTGGCCGAGAGGATCGT
CAGCTTCAGTCAGCCTCAGGTGACCTCTACTCCCGTCAAGGTCAAGCACA
AGCAAAGGACGACAAGGTCTCCAGATAAACAAGATTTGCAAACATGCCGT
GCGGACCGGTACGAGCGCCGCCTGGCGGAGTGTCTGGCCGACACAGCCCT
TCCCGTGGTGCCTGCCGGGGAGGCTGCACAGGTGTCCCCGTGTACCCCTG
GTGGATCCTCAAGCAGAGACCAGCATTCCGAGTCGCCGTGCCAGATGTGC
TGGGAGGCGGCGAACGACAGTCTGGCGGCGGCGCAGGCGCAGATCCGCCG
GGTCGCCAGCGGGACACCTAGCGGAGTGGGACCGGCAGTGCAGCGGACAG
GTGGCACACAGGCAGCAGCGACCCCTGGCGGTTCTCGCGGGCGGTGCAGC
CACAGCGCGCGGAGCTGCCGGCAGGGCTGTCCCGGGTGCCTGCGGGTGGT
GGGCGAGCTCGCCTTCCAGCTGGACATGCAGATCCTGCAGTACGTGTTCC
AGCGGAGGCGGCTGTACGGCGTCACGCTCAGGAACATCGCGGACAAGATA
CGGGAGGAGGCCGCCCCGGGGGGTCGGGAGACGCCGCCAGAGCCCGGCCC
TCCCGACAAACCCGCGGACACCAGCGGGAGCCTGTCCGCCGCCGAGGAGG
GGCTGGTGGAACGCTGGACGCAGGCGCTCGTACAGCGCATGTCCCCGGTC
GTAACCAGGGACGACCAGAGATGCCAGGCGTGTCAGACGAGCGAGGGGAA
CCTGGCGGACTTCCCGCCTGTAACCAGGGGCAACCGCCGGTGTCAGGCAT
GTCGGACGATCGAGGAGAACATGTTGGACTCTGTCCTGGCCGCGAGCCCG
GGGATTGGAGCGGCCGCGCGGGAGAGAGGAGCGGCCCGGCGCCTGTCCGT
TACCGAGGAGGACATGTTGGACCGGTGGGCGGACCGGCTGGCCGAGAGGA
TCGTCAGCTTCAGTCAGCCTCAGGTGACCTCTACTCCCGTCAAGGTCAAG
CACAAGCAAAGGACGACAAGGTCTCCAGATAAACAAGATTTGCAAACATG
CCGTGCGGACCGGTACGAGCGCCGCCTGGCGGAGTGTCTGGCCGACACAG
CCCTTCCCGTGGTGCCTGCCGGGGAGGCTGCACAGGTGTCCCCGTGTACC
CCTGGTGGATCCTCAAGCAGAGACCAGCATTCCGAGTCGCCGTGCCAGAT
GTGCTGGGAGGCGGCGAACGACAGTCTGGCGGCGGCGCAGGCGCAGATCC
GCCGGGTCGCCAGCGGGACACCTAGCGGAGTGGGACCGGCAGTGCAGCGG
ACAGGTGGCACACAGGCAGCAGCGACCCCTGGCGGTTCTCGCGGGCGGTG
CAGCCACAGCGCGCGGAGCTGCCGGCAGGGCTGTCCCGGGTGCCTGCGGG
TGGTGGGCGAGCTCGCCTTCCAGCTGGACATGCAGATCCTGCAGTACGTG
TTCCAGCGGAGGCGGCTGTACGGCGTCACGCTCAGGAACATCGCGGACAA
GATACGGGAGGAGGCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xpSc0039759 | genome | xpSc0039759:14372..16241 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96765_cuf3 |
| Biotype | protein_coding |
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