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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96762_cuf1 >transcript:BL96762_cuf1-protein ID=transcript:BL96762_cuf1-protein|Name=transcript:BL96762_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=285bp
MSAGEMAEPATPLAIAGITTPRNQEDSVQQSEETGRESHRQESEESDRRH
IGQESGDSGAVGDYEFDHLNSNYPSVTVDSRLPIIDYEQLVFPERSLLGQ
GGFGSVKKAIHRSWRQEVAVKSLTFEIYGTSEQELLYSEARKLNMGSRSD
YVIRICLEPHFAIVMPFMENGSLSELLQDIDVPSALRWRMAREIAMGMTF
LHCQNPQIIHCDLKAENVLLDGDFHVKISDFGLSKWKMKSRIVTETSPLG
GTPTHVPPEFFDTDGNPTDKSDVYSFGVLMWEIAT Run BLAST on NCBI mRNA from alignment at Sc0000167:154064..156132+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96762_cuf1 ID=transcript:BL96762_cuf1|Name=transcript:BL96762_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2069bp|location=Sequence derived from alignment at Sc0000167:154064..156132+ (Branchiostoma lanceolatum)
CGCCATGCTGGAAAACGAAACCATCTGCGCCATATTCCACGGGAACATCC
GTCCAGATGTGGAGATGGTGAACGGCATGTACGGAATCAACTTCAAGTTT
TACTGCGAGAGAACGCGTAGGCTGGAGTTTGACGTAAAGCTACTGGATTT
GGGCGAAGACTCGTTCTCAATGGTAGAGCTGTACCCTGGGCCAAGCTTTA
CCAAATGAGTGCCGGGGAAATGGCTGAGCCTGCCACGCCTCTCGCAATTG
CTGGAATAACTACACCGAGAGTTAGTATCATAGACATCGGTCATAGATCA
GAATACTGTTAAGAATGCTTTTTCTAGTTTTGCATATACATTTTAATAGT
TTTGTAAAAGATATAAATAGATTCAGGGATGGCGATTCGAAATTCGTGTT
TTCATTTTGTTAATCAATCAATCCATTGAATTGTCAAATGTATAAGTCAT
ATTTTGTTTACTTTCTAGCAATAACACAAATTGATATTTACACAATTAGA
ACCAAGAGGACAGTGTTCAGCAATCAGAAGAAACTGGTCGAGAGAGCCAC
CGTCAGGAATCAGAAGAAAGTGATCGACGGCACATCGGTCAGGAATCAGG
AGATAGTGGTGCTGTCGGTGATTATGAATTCGATCACCTGAACAGGTATG
ATATACTATTTTGAAATGTACCACAAACTGGATTTTTTTCTGCGGTCAAC
CAATTTTGCACATGCTCATGACTGTATTTACGTTTTCGATTTCTGCCCCC
CCCCCCCCTTTACATTATCCAGACATTATTCTACATTTTCAGCAACTATC
CCAGCGTGACAGTTGATAGTAGGCTCCCCATCATCGACTATGAGCAGCTC
GTCTTCCCGGAGAGGTCCCTTCTTGGCCAAGGAGGATTCGGCTCTGTGAA
GAAAGCCATCCATCGAAGCTGGAGACAGGAGGTAGCTGTCAAAAGTCTGA
CCTTTGAAATATATGGAACGTAAGTACAAGAATCTATGTTCCTGGAACCT
ACATCGTCATATATTTTTTCTGAGCTTTTTGTGCTTCTTCAGTGCTCTTT
GCGCTTCTAAAGTACTTTTTGTGCTTCTTCCTTACCTAAGCCTGAGGTAT
ATACATGTAATCAAATATCAACAAAAGGTATTAAAAATAATAATAGGTTT
TAGAATGTGGCTATAAATAATGTTTTAAATTTTGCCTTACCACAGAAGTG
AGCAAGAGCTGCTGTACTCTGAGGCGAGGAAGCTGAACATGGGGAGTCGA
TCAGACTACGTCATTCGTATCTGCCTCGAGCCACATTTCGCCATCGTCAT
GCCCTTCATGGAGAACGGCTCTCTGTCAGAGCTGCTGCAGGATATCGACG
TGCCATCGGCGCTGAGGTGGAGAATGGCGCGGGAGATAGCCATGGGGATG
ACTTTCCTGCACTGCCAGAACCCACAGATCATCCACTGTGATCTGAAGGC
AGAAAACGTGCTGCTTGATGGCGACTTCCACGTGAAGGTATGTGACACAA
ACCTCAAAATATACTAGTCGTGTTTTTAATATAAGTGTTTCAAATTTATT
TTCCTACCGGTACAATTCTACATGACAGTACTGATATAGAATTGCATGTT
GTTGTTTTTTTTCTTCGGGGAGAATGGAATTAATTAATTGTGTTTCTGTA
TTTTCTGCTTCCCATTTTGCATGCTGAAAGTGTTGTCAGCCCTTCTAATC
TACCATCAGACGTAGTAAGTGAGTAACAAACAACAATTAGATTTCAGACT
TTGGCCTTTCCAAATGGAAGATGAAATCCCGCATCGTGACCGAAACCAGC
CCTTTAGGCGGCACCCCCACACATGTTCCACCGGAGTTCTTTGACACAGA
CGGCAATCCAACCGACAAGTCCGATGTGTACAGGTACCTGCTATTAAGTT
TTGCTGCATGCATCTTTCTTTATCAACGACTACACGGCTAAATATCCTAC
AATTATTTACAATCTGTATGAAGTTTTCTTCATTAGAAGAGTTATTTCAT
TTCCCGAGTTTTCTCTGACTTTTGTGACGATTTCAGCTTTGGGGTGCTGA
TGTGGGAGATCGCAACCCG Coding sequence (CDS) from alignment at Sc0000167:154064..156132+ >transcript:BL96762_cuf1 ID=transcript:BL96762_cuf1|Name=transcript:BL96762_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=5130bp|location=Sequence derived from alignment at Sc0000167:154064..156132+ (Branchiostoma lanceolatum)
ATGAGTGCCGGGGAAATGGCTGAGCCTGCCACGCCTCTCGCAATTGCTGG
AATAACTACACCGAGAAACCAAGAGGACAGTGTTCAGCAATCAGAAGAAA
CTGGTCGAGAGAGCCACCGTCAGGAATCAGAAGAAAGTGATCGACGGCAC
ATCGGTCAGGAATCAGGAGATAGTGGTGCTGTCGGTGATTATGAATTCGA
TCACCTGAACAGCAACTATCCCAGCGTGACAGTTGATAGTAGGCTCCCCA
TCATCGACTATGAGCAGCTCGTCTTCCCGGAGAGGTCCCTTCTTGGCCAA
GGAGGATTCGGCTCTGTGAAGAAAGCCATCCATCGAAGCTGGAGACAGGA
GGTAGCTGTCAAAAGTCTGACCTTTGAAATATATGGAACAAGTGAGCAAG
AGCTGCTGTACTCTGAGGCGAGGAAGCTGAACATGGGGAGTCGATCAGAC
TACGTCATTCGTATCTGCCTCGAGCCACATTTCGCCATCGTCATGCCCTT
CATGGAGAACGGCTCTCTGTCAGAGCTGCTGCAGGATATCGACGTGCCAT
CGGCGCTGAGGTGGAGAATGGCGCGGGAGATAGCCATGGGGATGACTTTC
CTGCACTGCCAGAACCCACAGATCATCCACTGTGATCTGAAGGCAGAAAA
CGTGCTGCTTGATGGCGACTTCCACGTGAAGATTTCAGACTTTGGCCTTT
CCAAATGGAAGATGAAATCCCGCATCGTGACCGAAACCAGCCCTTTAGGC
GGCACCCCCACACATGTTCCACCGGAGTTCTTTGACACAGACGGCAATCC
AACCGACAAGTCCGATGTGTACAGCTTTGGGGTGCTGATGTGGGAGATCG
CAACCATGAGTGCCGGGGAAATGGCTGAGCCTGCCACGCCTCTCGCAATT
GCTGGAATAACTACACCGAGAAACCAAGAGGACAGTGTTCAGCAATCAGA
AGAAACTGGTCGAGAGAGCCACCGTCAGGAATCAGAAGAAAGTGATCGAC
GGCACATCGGTCAGGAATCAGGAGATAGTGGTGCTGTCGGTGATTATGAA
TTCGATCACCTGAACAGCAACTATCCCAGCGTGACAGTTGATAGTAGGCT
CCCCATCATCGACTATGAGCAGCTCGTCTTCCCGGAGAGGTCCCTTCTTG
GCCAAGGAGGATTCGGCTCTGTGAAGAAAGCCATCCATCGAAGCTGGAGA
CAGGAGGTAGCTGTCAAAAGTCTGACCTTTGAAATATATGGAACAAGTGA
GCAAGAGCTGCTGTACTCTGAGGCGAGGAAGCTGAACATGGGGAGTCGAT
CAGACTACGTCATTCGTATCTGCCTCGAGCCACATTTCGCCATCGTCATG
CCCTTCATGGAGAACGGCTCTCTGTCAGAGCTGCTGCAGGATATCGACGT
GCCATCGGCGCTGAGGTGGAGAATGGCGCGGGAGATAGCCATGGGGATGA
CTTTCCTGCACTGCCAGAACCCACAGATCATCCACTGTGATCTGAAGGCA
GAAAACGTGCTGCTTGATGGCGACTTCCACGTGAAGATTTCAGACTTTGG
CCTTTCCAAATGGAAGATGAAATCCCGCATCGTGACCGAAACCAGCCCTT
TAGGCGGCACCCCCACACATGTTCCACCGGAGTTCTTTGACACAGACGGC
AATCCAACCGACAAGTCCGATGTGTACAGCTTTGGGGTGCTGATGTGGGA
GATCGCAACCATGAGTGCCGGGGAAATGGCTGAGCCTGCCACGCCTCTCG
CAATTGCTGGAATAACTACACCGAGAAACCAAGAGGACAGTGTTCAGCAA
TCAGAAGAAACTGGTCGAGAGAGCCACCGTCAGGAATCAGAAGAAAGTGA
TCGACGGCACATCGGTCAGGAATCAGGAGATAGTGGTGCTGTCGGTGATT
ATGAATTCGATCACCTGAACAGCAACTATCCCAGCGTGACAGTTGATAGT
AGGCTCCCCATCATCGACTATGAGCAGCTCGTCTTCCCGGAGAGGTCCCT
TCTTGGCCAAGGAGGATTCGGCTCTGTGAAGAAAGCCATCCATCGAAGCT
GGAGACAGGAGGTAGCTGTCAAAAGTCTGACCTTTGAAATATATGGAACA
AGTGAGCAAGAGCTGCTGTACTCTGAGGCGAGGAAGCTGAACATGGGGAG
TCGATCAGACTACGTCATTCGTATCTGCCTCGAGCCACATTTCGCCATCG
TCATGCCCTTCATGGAGAACGGCTCTCTGTCAGAGCTGCTGCAGGATATC
GACGTGCCATCGGCGCTGAGGTGGAGAATGGCGCGGGAGATAGCCATGGG
GATGACTTTCCTGCACTGCCAGAACCCACAGATCATCCACTGTGATCTGA
AGGCAGAAAACGTGCTGCTTGATGGCGACTTCCACGTGAAGATTTCAGAC
TTTGGCCTTTCCAAATGGAAGATGAAATCCCGCATCGTGACCGAAACCAG
CCCTTTAGGCGGCACCCCCACACATGTTCCACCGGAGTTCTTTGACACAG
ACGGCAATCCAACCGACAAGTCCGATGTGTACAGCTTTGGGGTGCTGATG
TGGGAGATCGCAACCATGAGTGCCGGGGAAATGGCTGAGCCTGCCACGCC
TCTCGCAATTGCTGGAATAACTACACCGAGAAACCAAGAGGACAGTGTTC
AGCAATCAGAAGAAACTGGTCGAGAGAGCCACCGTCAGGAATCAGAAGAA
AGTGATCGACGGCACATCGGTCAGGAATCAGGAGATAGTGGTGCTGTCGG
TGATTATGAATTCGATCACCTGAACAGCAACTATCCCAGCGTGACAGTTG
ATAGTAGGCTCCCCATCATCGACTATGAGCAGCTCGTCTTCCCGGAGAGG
TCCCTTCTTGGCCAAGGAGGATTCGGCTCTGTGAAGAAAGCCATCCATCG
AAGCTGGAGACAGGAGGTAGCTGTCAAAAGTCTGACCTTTGAAATATATG
GAACAAGTGAGCAAGAGCTGCTGTACTCTGAGGCGAGGAAGCTGAACATG
GGGAGTCGATCAGACTACGTCATTCGTATCTGCCTCGAGCCACATTTCGC
CATCGTCATGCCCTTCATGGAGAACGGCTCTCTGTCAGAGCTGCTGCAGG
ATATCGACGTGCCATCGGCGCTGAGGTGGAGAATGGCGCGGGAGATAGCC
ATGGGGATGACTTTCCTGCACTGCCAGAACCCACAGATCATCCACTGTGA
TCTGAAGGCAGAAAACGTGCTGCTTGATGGCGACTTCCACGTGAAGATTT
CAGACTTTGGCCTTTCCAAATGGAAGATGAAATCCCGCATCGTGACCGAA
ACCAGCCCTTTAGGCGGCACCCCCACACATGTTCCACCGGAGTTCTTTGA
CACAGACGGCAATCCAACCGACAAGTCCGATGTGTACAGCTTTGGGGTGC
TGATGTGGGAGATCGCAACCATGAGTGCCGGGGAAATGGCTGAGCCTGCC
ACGCCTCTCGCAATTGCTGGAATAACTACACCGAGAAACCAAGAGGACAG
TGTTCAGCAATCAGAAGAAACTGGTCGAGAGAGCCACCGTCAGGAATCAG
AAGAAAGTGATCGACGGCACATCGGTCAGGAATCAGGAGATAGTGGTGCT
GTCGGTGATTATGAATTCGATCACCTGAACAGCAACTATCCCAGCGTGAC
AGTTGATAGTAGGCTCCCCATCATCGACTATGAGCAGCTCGTCTTCCCGG
AGAGGTCCCTTCTTGGCCAAGGAGGATTCGGCTCTGTGAAGAAAGCCATC
CATCGAAGCTGGAGACAGGAGGTAGCTGTCAAAAGTCTGACCTTTGAAAT
ATATGGAACAAGTGAGCAAGAGCTGCTGTACTCTGAGGCGAGGAAGCTGA
ACATGGGGAGTCGATCAGACTACGTCATTCGTATCTGCCTCGAGCCACAT
TTCGCCATCGTCATGCCCTTCATGGAGAACGGCTCTCTGTCAGAGCTGCT
GCAGGATATCGACGTGCCATCGGCGCTGAGGTGGAGAATGGCGCGGGAGA
TAGCCATGGGGATGACTTTCCTGCACTGCCAGAACCCACAGATCATCCAC
TGTGATCTGAAGGCAGAAAACGTGCTGCTTGATGGCGACTTCCACGTGAA
GATTTCAGACTTTGGCCTTTCCAAATGGAAGATGAAATCCCGCATCGTGA
CCGAAACCAGCCCTTTAGGCGGCACCCCCACACATGTTCCACCGGAGTTC
TTTGACACAGACGGCAATCCAACCGACAAGTCCGATGTGTACAGCTTTGG
GGTGCTGATGTGGGAGATCGCAACCATGAGTGCCGGGGAAATGGCTGAGC
CTGCCACGCCTCTCGCAATTGCTGGAATAACTACACCGAGAAACCAAGAG
GACAGTGTTCAGCAATCAGAAGAAACTGGTCGAGAGAGCCACCGTCAGGA
ATCAGAAGAAAGTGATCGACGGCACATCGGTCAGGAATCAGGAGATAGTG
GTGCTGTCGGTGATTATGAATTCGATCACCTGAACAGCAACTATCCCAGC
GTGACAGTTGATAGTAGGCTCCCCATCATCGACTATGAGCAGCTCGTCTT
CCCGGAGAGGTCCCTTCTTGGCCAAGGAGGATTCGGCTCTGTGAAGAAAG
CCATCCATCGAAGCTGGAGACAGGAGGTAGCTGTCAAAAGTCTGACCTTT
GAAATATATGGAACAAGTGAGCAAGAGCTGCTGTACTCTGAGGCGAGGAA
GCTGAACATGGGGAGTCGATCAGACTACGTCATTCGTATCTGCCTCGAGC
CACATTTCGCCATCGTCATGCCCTTCATGGAGAACGGCTCTCTGTCAGAG
CTGCTGCAGGATATCGACGTGCCATCGGCGCTGAGGTGGAGAATGGCGCG
GGAGATAGCCATGGGGATGACTTTCCTGCACTGCCAGAACCCACAGATCA
TCCACTGTGATCTGAAGGCAGAAAACGTGCTGCTTGATGGCGACTTCCAC
GTGAAGATTTCAGACTTTGGCCTTTCCAAATGGAAGATGAAATCCCGCAT
CGTGACCGAAACCAGCCCTTTAGGCGGCACCCCCACACATGTTCCACCGG
AGTTCTTTGACACAGACGGCAATCCAACCGACAAGTCCGATGTGTACAGC
TTTGGGGTGCTGATGTGGGAGATCGCAACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000167 | genome | Sc0000167:154064..156132 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96762_cuf1 |
| Biotype | protein_coding |
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