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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96757_cuf1 >transcript:BL96757_cuf1-protein ID=transcript:BL96757_cuf1-protein|Name=transcript:BL96757_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
AGGRFGTAMVAMGDMDSDGFNDVAVGAPYAGKTGEGVVYIFRGSPGGLRE
EPSLAIEASSVGPGLKSFGYSLSGGVDIDGNLYPDLAVGAFESDAATVFR
SVPVIDIITSVLSVRQKVVDPETRRCYTADGGRAACFNVMLCVEYGGHGV
PETQDFLVDVVLDGPLLPLQRAVLKQDKSELAMSLLKRQTSCLMLDVHLK
DEIRDKLTPISVEATLKLSLPNQPIS Run BLAST on NCBI mRNA from alignment at Sc0000053:117498..120235- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96757_cuf1 ID=transcript:BL96757_cuf1|Name=transcript:BL96757_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2738bp|location=Sequence derived from alignment at Sc0000053:117498..120235- (Branchiostoma lanceolatum)
CCGCAGGGGGGCGCTTCGGCACAGCCATGGTTGCCATGGGCGACATGGAC
AGCGATGGGTTCAACGGTAAGTCAACTCTAACTGTAATCTTAGGCCCAAT
TAAGACACACTGTCAGAATAATTGCTGTCTCATAATGAGGGCGATATTGT
GCGTATGGCGTCTCAATCACGTATAGCTACGCACTATGCGCCGGAAGATA
GCCGTGGCGACTACAGAATGGCGCTTTTGCTTGCATATTATACCAATGGC
TTCTATATATGATATACAAGCAAAACGCCCTTTTGTAGTCACCACGGCTA
ACCAGAAGACAAAATCTAATACATTACAAACCCCAAACAATTCATGCATC
CAGTACAACAATAATCTGTATAAAAGGAAATCAAGATAAAGGAATCAGAT
CTCACCAGGCAATGAGTTTAAGTTCGTCTTGCACCATTCAAATATTATGC
TACATTTTTTTTCCTTCCTTTCTATATTCGGAAAGCTAAGTTAAAGAAAC
TACTTACTGTCAATTTCAGATGTAGCGGTCGGTGCACCGTATGCAGGCAA
GACAGGAGAAGGAGTGGTGTACATCTTCAGGGGATCGCCAGGGGGCCTCA
GAGAGGAACCGTCGCTTGTAAGACCAGGGTTCTTTAATAATTATTCACAA
CCAAGATATGTATATATATATATACACAAAAAAGCCGACGTTTCGGTGAC
CGACCGTAACCTTCATCATAACAAAACTGACTGGTTCTATTTCGCACTGC
AGCTAGGTGTCGCTGTTAATACCGGTAATGTTGTACCATACTGCAGCAGG
TGCCTCATTGCATTATCTCTACTGCGTAGAAATTTAGGATATGTTTCGTA
GAAGTCTTCAGCAATCCAATTCTTTTTCTTAGATCATTTATTCTACGTAA
TGTAGCAGACAGAGTTTGGTTTCTAGCATGAGTGCATATTTCTTAAAAAC
TATTTGGGGTACTGTTCATTTTCCCCCAATGCATTAGGCAATAGAAGCGA
GCTCCGTTGGGCCCGGTCTGAAGTCATTTGGTTACTCCTTATCAGGCGGT
GTAGACATCGACGGTAATCTTTATCCAGGTGAGATTTTCTTTGAGTTGAA
AAGATGCTGCCCCTACCCTGAGGCGTCGCCCAAAAAAGAATGCATACTTT
TGCCACCGCCATGATCAGGATGGATAACAGAGAGAAACCAATCAATAATG
TACACATTGTGACCAACTCCTGACCTACATAAAGTATTGGATTGCATGTA
CATGTATGTATGCCCGAAGTCCACATTTTGAATTTTGATCTTTTTTAAAA
TGACCGCTCTCTCTCTGTTACCGTTGCCGACGTGCACGCTTTTCTTAAAA
GAATCCGTAGCGGACTTTACACAAGATGCAGCTAGACGATTTTACGATGC
GCATTTGTACTTTCCAGATTTGGCAGTTGGAGCATTTGAATCTGATGCTG
CAACAGTTTTTAGGTAAGATCCTAAAACTCTTCAGTTATACATAAAAATG
AACCTCTTTAGAAATGATATAACTGAAGGGTATCCCATACAAAAAAGGCA
ACGGGGCTACCCTTATAATTATCTTTTTTAAATGTACATAAAATCACCAT
TCTCTCCCAGGTCTGTCCCCGTGATCGACATCATCACCTCCGTGCTGTCC
GTCCGGCAGAAGGTTGTGGACCCGGAGACCAGACGGTGCTATACTGCTGA
CGGGGGAAGGGCGGCCTGGTACGTTCCATAATCTGCTTAGTAACTAACAA
GACCATAGAATGTCCAGGACAAAAGATACAAAAACCGGAAGTTCTGCTGC
AACACCAAGGCAACACAACAGGGGGCCCTAATTCGACCTCGACCTTCGCC
TTGACCTTCCCAACTGAAATCTCATTCTTCAATTTTGCTATGAATGTGTC
TTGCCTTATGAGAGTCAGTGATAAATAAACAATAAGGAACAAAACAAGAA
ATTCGCAAAAACTATTTGGTGTGTTGAATCGCGGTTAAGCTGACATTTTC
CTTATTTTACCTTCATACCATTTCCAGCGTGATGATGTGTGTGTTGAGTA
CGGTTCTAAGTTGTACTAGTACTACGGCTCTAGCGGTGTAAGTAGTAGCT
GTTTGTTGTGTTGATCGTAAAAAGCAGTTAAACTGACATTTCCCGCCCTT
CAGTTTCAACGTGATGCTGTGTGTAGAGTACGGAGGCCATGGTGTGCCTG
AAATTAGTTATAGCACTACGGGGATGGCTGTGTCAGTAGTAGTTGCTTGT
TGTGTTAATCATTAAAAGACATTTCCCGCCTTCCAGTTTCAACGTGATGC
TGTGTGTTGAGTATGGCGGCCACGGTGTGCCTGACACGCAGGACTTCCTG
GTGGATGTGGTGTTGGATGGCCCGCTACTGCCTCTGCAGCGAGCCGTACT
GAAACAGGACAAGTCAGAACTCGCCATGAGTCTGCTGAAGAGACAAACAA
GCTGTCTGATGCTGGACGTTCATCTCAAAGTATGATGTTGAACATTTCAC
TCCTTCATGACTTGTCATTTGTATTAGTTATATTTTATATATACATCATA
TCACATCATTTGGGCGTCAGAACCTTTTTATTGCATTCATTTTTTTATTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCCC
GATCTCCAGGATGAAATACGTGACAAGTTGACACCAATCTCGGTTGAGGC
AACCTTAAAGTTAAGCCTTCCCAATCAGCCAATCAGCG Coding sequence (CDS) from alignment at Sc0000053:117498..120235- >transcript:BL96757_cuf1 ID=transcript:BL96757_cuf1|Name=transcript:BL96757_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=5424bp|location=Sequence derived from alignment at Sc0000053:117498..120235- (Branchiostoma lanceolatum)
GCAGGGGGGCGCTTCGGCACAGCCATGGTTGCCATGGGCGACATGGACAG
CGATGGGTTCAACGATGTAGCGGTCGGTGCACCGTATGCAGGCAAGACAG
GAGAAGGAGTGGTGTACATCTTCAGGGGATCGCCAGGGGGCCTCAGAGAG
GAACCGTCGCTTGCAATAGAAGCGAGCTCCGTTGGGCCCGGTCTGAAGTC
ATTTGGTTACTCCTTATCAGGCGGTGTAGACATCGACGGTAATCTTTATC
CAGATTTGGCAGTTGGAGCATTTGAATCTGATGCTGCAACAGTTTTTAGG
TCTGTCCCCGTGATCGACATCATCACCTCCGTGCTGTCCGTCCGGCAGAA
GGTTGTGGACCCGGAGACCAGACGGTGCTATACTGCTGACGGGGGAAGGG
CGGCCTGTTTCAACGTGATGCTGTGTGTAGAGTACGGAGGCCATGGTGTG
CCTGAAACGCAGGACTTCCTGGTGGATGTGGTGTTGGATGGCCCGCTACT
GCCTCTGCAGCGAGCCGTACTGAAACAGGACAAGTCAGAACTCGCCATGA
GTCTGCTGAAGAGACAAACAAGCTGTCTGATGCTGGACGTTCATCTCAAA
GATGAAATACGTGACAAGTTGACACCAATCTCGGTTGAGGCAACCTTAAA
GTTAAGCCTTCCCAATCAGCCAATCAGCGCAGGGGGGCGCTTCGGCACAG
CCATGGTTGCCATGGGCGACATGGACAGCGATGGGTTCAACGATGTAGCG
GTCGGTGCACCGTATGCAGGCAAGACAGGAGAAGGAGTGGTGTACATCTT
CAGGGGATCGCCAGGGGGCCTCAGAGAGGAACCGTCGCTTGCAATAGAAG
CGAGCTCCGTTGGGCCCGGTCTGAAGTCATTTGGTTACTCCTTATCAGGC
GGTGTAGACATCGACGGTAATCTTTATCCAGATTTGGCAGTTGGAGCATT
TGAATCTGATGCTGCAACAGTTTTTAGGTCTGTCCCCGTGATCGACATCA
TCACCTCCGTGCTGTCCGTCCGGCAGAAGGTTGTGGACCCGGAGACCAGA
CGGTGCTATACTGCTGACGGGGGAAGGGCGGCCTGTTTCAACGTGATGCT
GTGTGTAGAGTACGGAGGCCATGGTGTGCCTGAAACGCAGGACTTCCTGG
TGGATGTGGTGTTGGATGGCCCGCTACTGCCTCTGCAGCGAGCCGTACTG
AAACAGGACAAGTCAGAACTCGCCATGAGTCTGCTGAAGAGACAAACAAG
CTGTCTGATGCTGGACGTTCATCTCAAAGATGAAATACGTGACAAGTTGA
CACCAATCTCGGTTGAGGCAACCTTAAAGTTAAGCCTTCCCAATCAGCCA
ATCAGCGCAGGGGGGCGCTTCGGCACAGCCATGGTTGCCATGGGCGACAT
GGACAGCGATGGGTTCAACGATGTAGCGGTCGGTGCACCGTATGCAGGCA
AGACAGGAGAAGGAGTGGTGTACATCTTCAGGGGATCGCCAGGGGGCCTC
AGAGAGGAACCGTCGCTTGCAATAGAAGCGAGCTCCGTTGGGCCCGGTCT
GAAGTCATTTGGTTACTCCTTATCAGGCGGTGTAGACATCGACGGTAATC
TTTATCCAGATTTGGCAGTTGGAGCATTTGAATCTGATGCTGCAACAGTT
TTTAGGTCTGTCCCCGTGATCGACATCATCACCTCCGTGCTGTCCGTCCG
GCAGAAGGTTGTGGACCCGGAGACCAGACGGTGCTATACTGCTGACGGGG
GAAGGGCGGCCTGTTTCAACGTGATGCTGTGTGTAGAGTACGGAGGCCAT
GGTGTGCCTGAAACGCAGGACTTCCTGGTGGATGTGGTGTTGGATGGCCC
GCTACTGCCTCTGCAGCGAGCCGTACTGAAACAGGACAAGTCAGAACTCG
CCATGAGTCTGCTGAAGAGACAAACAAGCTGTCTGATGCTGGACGTTCAT
CTCAAAGATGAAATACGTGACAAGTTGACACCAATCTCGGTTGAGGCAAC
CTTAAAGTTAAGCCTTCCCAATCAGCCAATCAGCGCAGGGGGGCGCTTCG
GCACAGCCATGGTTGCCATGGGCGACATGGACAGCGATGGGTTCAACGAT
GTAGCGGTCGGTGCACCGTATGCAGGCAAGACAGGAGAAGGAGTGGTGTA
CATCTTCAGGGGATCGCCAGGGGGCCTCAGAGAGGAACCGTCGCTTGCAA
TAGAAGCGAGCTCCGTTGGGCCCGGTCTGAAGTCATTTGGTTACTCCTTA
TCAGGCGGTGTAGACATCGACGGTAATCTTTATCCAGATTTGGCAGTTGG
AGCATTTGAATCTGATGCTGCAACAGTTTTTAGGTCTGTCCCCGTGATCG
ACATCATCACCTCCGTGCTGTCCGTCCGGCAGAAGGTTGTGGACCCGGAG
ACCAGACGGTGCTATACTGCTGACGGGGGAAGGGCGGCCTGTTTCAACGT
GATGCTGTGTGTAGAGTACGGAGGCCATGGTGTGCCTGAAACGCAGGACT
TCCTGGTGGATGTGGTGTTGGATGGCCCGCTACTGCCTCTGCAGCGAGCC
GTACTGAAACAGGACAAGTCAGAACTCGCCATGAGTCTGCTGAAGAGACA
AACAAGCTGTCTGATGCTGGACGTTCATCTCAAAGATGAAATACGTGACA
AGTTGACACCAATCTCGGTTGAGGCAACCTTAAAGTTAAGCCTTCCCAAT
CAGCCAATCAGCGCAGGGGGGCGCTTCGGCACAGCCATGGTTGCCATGGG
CGACATGGACAGCGATGGGTTCAACGATGTAGCGGTCGGTGCACCGTATG
CAGGCAAGACAGGAGAAGGAGTGGTGTACATCTTCAGGGGATCGCCAGGG
GGCCTCAGAGAGGAACCGTCGCTTGCAATAGAAGCGAGCTCCGTTGGGCC
CGGTCTGAAGTCATTTGGTTACTCCTTATCAGGCGGTGTAGACATCGACG
GTAATCTTTATCCAGATTTGGCAGTTGGAGCATTTGAATCTGATGCTGCA
ACAGTTTTTAGGTCTGTCCCCGTGATCGACATCATCACCTCCGTGCTGTC
CGTCCGGCAGAAGGTTGTGGACCCGGAGACCAGACGGTGCTATACTGCTG
ACGGGGGAAGGGCGGCCTGTTTCAACGTGATGCTGTGTGTAGAGTACGGA
GGCCATGGTGTGCCTGAAACGCAGGACTTCCTGGTGGATGTGGTGTTGGA
TGGCCCGCTACTGCCTCTGCAGCGAGCCGTACTGAAACAGGACAAGTCAG
AACTCGCCATGAGTCTGCTGAAGAGACAAACAAGCTGTCTGATGCTGGAC
GTTCATCTCAAAGATGAAATACGTGACAAGTTGACACCAATCTCGGTTGA
GGCAACCTTAAAGTTAAGCCTTCCCAATCAGCCAATCAGCGCAGGGGGGC
GCTTCGGCACAGCCATGGTTGCCATGGGCGACATGGACAGCGATGGGTTC
AACGATGTAGCGGTCGGTGCACCGTATGCAGGCAAGACAGGAGAAGGAGT
GGTGTACATCTTCAGGGGATCGCCAGGGGGCCTCAGAGAGGAACCGTCGC
TTGCAATAGAAGCGAGCTCCGTTGGGCCCGGTCTGAAGTCATTTGGTTAC
TCCTTATCAGGCGGTGTAGACATCGACGGTAATCTTTATCCAGATTTGGC
AGTTGGAGCATTTGAATCTGATGCTGCAACAGTTTTTAGGTCTGTCCCCG
TGATCGACATCATCACCTCCGTGCTGTCCGTCCGGCAGAAGGTTGTGGAC
CCGGAGACCAGACGGTGCTATACTGCTGACGGGGGAAGGGCGGCCTGTTT
CAACGTGATGCTGTGTGTAGAGTACGGAGGCCATGGTGTGCCTGAAACGC
AGGACTTCCTGGTGGATGTGGTGTTGGATGGCCCGCTACTGCCTCTGCAG
CGAGCCGTACTGAAACAGGACAAGTCAGAACTCGCCATGAGTCTGCTGAA
GAGACAAACAAGCTGTCTGATGCTGGACGTTCATCTCAAAGATGAAATAC
GTGACAAGTTGACACCAATCTCGGTTGAGGCAACCTTAAAGTTAAGCCTT
CCCAATCAGCCAATCAGCGCAGGGGGGCGCTTCGGCACAGCCATGGTTGC
CATGGGCGACATGGACAGCGATGGGTTCAACGATGTAGCGGTCGGTGCAC
CGTATGCAGGCAAGACAGGAGAAGGAGTGGTGTACATCTTCAGGGGATCG
CCAGGGGGCCTCAGAGAGGAACCGTCGCTTGCAATAGAAGCGAGCTCCGT
TGGGCCCGGTCTGAAGTCATTTGGTTACTCCTTATCAGGCGGTGTAGACA
TCGACGGTAATCTTTATCCAGATTTGGCAGTTGGAGCATTTGAATCTGAT
GCTGCAACAGTTTTTAGGTCTGTCCCCGTGATCGACATCATCACCTCCGT
GCTGTCCGTCCGGCAGAAGGTTGTGGACCCGGAGACCAGACGGTGCTATA
CTGCTGACGGGGGAAGGGCGGCCTGTTTCAACGTGATGCTGTGTGTAGAG
TACGGAGGCCATGGTGTGCCTGAAACGCAGGACTTCCTGGTGGATGTGGT
GTTGGATGGCCCGCTACTGCCTCTGCAGCGAGCCGTACTGAAACAGGACA
AGTCAGAACTCGCCATGAGTCTGCTGAAGAGACAAACAAGCTGTCTGATG
CTGGACGTTCATCTCAAAGATGAAATACGTGACAAGTTGACACCAATCTC
GGTTGAGGCAACCTTAAAGTTAAGCCTTCCCAATCAGCCAATCAGCGCAG
GGGGGCGCTTCGGCACAGCCATGGTTGCCATGGGCGACATGGACAGCGAT
GGGTTCAACGATGTAGCGGTCGGTGCACCGTATGCAGGCAAGACAGGAGA
AGGAGTGGTGTACATCTTCAGGGGATCGCCAGGGGGCCTCAGAGAGGAAC
CGTCGCTTGCAATAGAAGCGAGCTCCGTTGGGCCCGGTCTGAAGTCATTT
GGTTACTCCTTATCAGGCGGTGTAGACATCGACGGTAATCTTTATCCAGA
TTTGGCAGTTGGAGCATTTGAATCTGATGCTGCAACAGTTTTTAGGTCTG
TCCCCGTGATCGACATCATCACCTCCGTGCTGTCCGTCCGGCAGAAGGTT
GTGGACCCGGAGACCAGACGGTGCTATACTGCTGACGGGGGAAGGGCGGC
CTGTTTCAACGTGATGCTGTGTGTAGAGTACGGAGGCCATGGTGTGCCTG
AAACGCAGGACTTCCTGGTGGATGTGGTGTTGGATGGCCCGCTACTGCCT
CTGCAGCGAGCCGTACTGAAACAGGACAAGTCAGAACTCGCCATGAGTCT
GCTGAAGAGACAAACAAGCTGTCTGATGCTGGACGTTCATCTCAAAGATG
AAATACGTGACAAGTTGACACCAATCTCGGTTGAGGCAACCTTAAAGTTA
AGCCTTCCCAATCAGCCAATCAGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000053 | genome | Sc0000053:117498..120235 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96757_cuf1 |
| Biotype | protein_coding |
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