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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96735_cuf5 >transcript:BL96735_cuf5-protein ID=transcript:BL96735_cuf5-protein|Name=transcript:BL96735_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=419bp
DQVAAQTTTALPSSTTRTTIMTTSTAATTTPVTTTTAATTTPATTTAATT
TPGTTTPVTTSAATATPVTTTTATTTPGTTTVATTTPETPTTATFTPGTI
TAATTTPGTTSAAPTTLEATTVATTTPETTFAPTTSPTTSTAATTPTATV
PATTTSASTPGTGTATSNTAADITGTTHVTTAPTTTATSADSISAASTTS
TAATTSTAATAATAPQSGTSQATVMRTSLPGVMSPSPGESTSGATTGCPP
GYAPFGGSCFKAYNKDKTYNQARQVCAADGGLLAMPRDKDEDNFLRDLKN
SVDPNSPFWFGLSSQKSEGGWVWEDGTPYNTAADRQYGGWQLGEPSNKGG
GGGVCANHFETGWNDAPCSSAQKFICQLNGAVRCPLGYLRCGHGHACILA
WKRCDGRTDCSDGSDEEGC Run BLAST on NCBI mRNA from alignment at Sc0000286:212983..217477- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96735_cuf5 ID=transcript:BL96735_cuf5|Name=transcript:BL96735_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=4495bp|location=Sequence derived from alignment at Sc0000286:212983..217477- (Branchiostoma lanceolatum)
TAGATCAAGGTGTGCGTTGTATTCACCATCGTTATCATAATTACTTATAA
GAACATTCTAACATTATCATCCCTGGGTCAGTATGTATGCATTATCATAG
TGGTAAGTTTGTTTCCAGCTCCCATATTTACCTGCTAAAACTGATATGCT
GTTTAGTAAATACTTTCGTTGTTAACATGTTCTCTCCTCCCTTTGGCTGT
TTTCTAAGCAGTTTTCCCTTACTGTTTTACTTTGGATCTCATTTCATTTT
ATCTTATTACGTGCAATGTCTGTCTCTTTTCTCCTCCCTCGTTCAAATCG
CTACTTGTCACGAATGGTGAACAGTTTAAACACTTTACAAGGACATTCGC
ATGTACGACCTGTGTTATGGTTGACTAGCGATACTTTCCAAGCTCGGCTA
CGGCTGGTTTTTGACATGTTTTTAGGCTCCGCCTTCCAATACCGTGCCCT
AGACACAGTGGGTAACAACCCGCTGCTCCAACGGCCCCAATAGGCTATGG
TACCTTTACCTTTACCTAGGCGTTTTTGTTGGGTTATATATTTTTCCCGT
TTTCTTTATGTCGCAAAGCTAAACAAGCCGCAGCCGAAACTCTGCCTGGA
CAGTAGATTTTATTAAGCGAATCTATATGACATTGTGATATATTATTGAT
GTGGTCTGTTCGTTTCTTGTGACACGATGTGCCGTATGTGTAACTTCATC
TCTCATAATTCTACCACCAAATAAAAAAAAGGCAATTCATAGATATCATG
GTGCAGAATCAGTAATCCCTGAGGGGATATGCATACTTCAGATATTCAGG
TCTTCCAGACATTTTTGAGAATGCCTTAATAACACCGTTATCTACAGAAT
GATGTAGCGGTCTGTCTGATTGTCTTGTCAAATATTTCATTTTCCGTATT
GAACAAGTGGCGGCGAGAATAGGCGTTGCATGTGACTTGCGTCCGCCGTC
ACTTTGTCTTGTCCCTTTTGTATGTTTGATGTTTCTGTGAATAAAAAACG
AATAAAAAAAGAAGATGTAGCGGTGTGAGTGTAGCCGGCGGACTTATGTG
AGTTGGGGCTTAAATATTTGCTATAACAGGCCTCAAATAACCATTTTATG
TGTCACTAACTTTATAGACTGATGCAGGTTAATAACATGTTTGACTATCT
AGATAAACATAACTGGCCCGTCTTTCCATGTGGTTGGGCTTGGCGAGTTG
GCAGCCTCGACAGAGCTTATAGAAATACACAGGAGTAACAACGGGTGTGT
CCATGCTTTTATAATTAATGCATAGTAATGTACTTCTTTTTTTCAGGAAC
CTGTCAAAACAGAGGAACTGTAACAACACAAAACTATTTATAGATAACGA
GCTTTTTTCAAGACATCTAAGGACCAACTCCTTGTCTTCACAGCTCAGTG
TCAAGATCAACTCTAATAATCTCTATTCTTTAGGATTTTTCTAATGAAAC
TACTATCACTGCAAATTTTTCTAAAGAAACTAATGTCAATTCACTTTCCA
TTGTTATAATGAAAAAGAAATCAATACAAGAAAACTGTGCTCTGTTTTCT
GCTGGCAACAGGTGTATTTTACAGAATATCTGTAATGTCATATTACCTGC
GTGACTAATGGCATTTCCTGTGTCATGAAAACACCGTCTGATGAATAAAT
TATTACTCCGAATTGTCCTGACCCGTCTTTTGTGAAGGGATCACGAGCTC
GAGACGGGTCGTTTTGTGTCTGCCTGTCATTACGAAAAATTACACTGAGT
TACACTCCTTTGTTGTTAAACACGCATCATGATGACATTGTTGAAAACTA
TAATTTCGGAATTTCATGTTGTTCAGAGTTTGTTTCTGTTCACGTCCTTT
ATGTACTGAATATTTTGCTGGATCAACAGTAGCCTCACAAATCCAACAAA
ATTACTGAGCAAAAAGCTGAGCTTACCACATAGTTTCTAGAAACAAAACA
AACCGTAGAGTAAAAGGTTTTATAAGACATGCAAGAATCATATTCCATGT
CGGACCATGGAAAAATATTTAGAACTAACTTAAACATGATTTGAATTATG
CTCTGCAATCAGCAAAATTAGAATCAATGCCCACCCTCTTGAACTAATAA
AATTGCGGTACAAGAACTGATCTGTGTTCCATAGAACTTGTTAATCCTGC
ATGTGACGGTGGAAGACGAAACACATTTTAATTCAAATTGCTCTTTCAAC
GATCACAAAAGAAAGGAGCTGTTCAAGAAGCCACCAAACTGTATCCTAAT
TTCTCCACGTTTACAGACAAAAAACTACTCTCCTCTTAACATCACAAAAC
CCAGACATTACAGCAAAAGCCCACGGGATCATTCGTCTTCGATTGTCTCT
GAAAAAGAAGAAGTTAAATCCAATAAGTTAGAATCTACATGTATGATGTA
GTGTCAGTATTTAGACGAGAGAAGTCACATGCTATAAAATTGTTCCCTAC
TGTCTGTCCTTCCTTTCCATGTTACATGTATTTGTAACTAGTCTCCAGGC
AAGAACTTGCAATAAAATTTCACAATATGTGGAACTTCTAAATTCAAAGA
GTCTCCTTCCTATTACAAACTAGGATATAACTCAAGCCAACTCACGAACG
AAAATAGTTTCATCAGGTTGGCTAAAGAAACTCCAAATATCCTTTAGCCA
ACTCAGTTTTTTCATGCATGCATTACAAAACATGTGAACAACATTTCCCT
CAAATGTATGTGCGGCTGATCGATGTCATCGTTTTTTTTTCCAGTTGCAG
CCCAAACAACCACAGCTCTACCTTCATCCACTACAAGAACCACAATCATG
ACAACTAGTACTGCGGCCACTACTACTCCTGTAACTACTACTACTGCGGC
CACTACTACTCCTGCAACTACTACTGCGGCAACTACTACTCCTGGCACCA
CTACTCCTGTTACTACTTCTGCGGCCACTGCTACTCCTGTAACTACTACT
ACGGCCACTACTACTCCTGGAACTACTACTGTGGCCACTACTACTCCTGA
AACTCCTACTACGGCCACTTTTACTCCTGGAACTATTACTGCAGCCACTA
CTACTCCTGGAACTACTTCTGCAGCCCCTACTACTCTTGAAGCTACTACT
GTTGCTACTACTACTCCTGAAACTACTTTTGCACCCACTACTTCTCCTAC
TACTAGTACTGCTGCTACTACTCCTACTGCTACTGTTCCTGCAACCACTA
CTTCTGCTTCTACTCCTGGAACTGGAACTGCTACTTCTAATACTGCTGCT
GATATTACTGGCACCACTCATGTAACTACTGCTCCTACTACTACTGCAAC
TTCTGCTGATTCTATTTCTGCTGCAAGTACTACTAGTACTGCTGCTACAA
CTTCTACTGCTGCAACTGCTGCTACTGCACCACAGTCTGGTACATCCCAA
GCGACAGTCATGCGCACCTCGTTACCAGGAGTGATGTCACCATCACCGGG
GGAAAGTACTTCAGGAGCAACAACAGGTGAGGTTAATGCACATTTGACAA
CATTGGTGAAGGCTTGGCTAAGACAGTGACCAAAAGACAGGTTACTCTTC
ATGACACTTTTGAAATGTAGACTGAGACAACTGATAAGGGATTATGTATG
GTGACCATACCATGGTACATACGTTTACTCCGGGAAAGGCCACAGTAGGA
GGCGCTTCCTAAGTCCTATACCCATGACAAAGCCATCTCATCTTTAATGT
TTTTTATAGGTTGTCCTCCTGGCTACGCTCCATTCGGGGGTTCGTGCTTC
AAGGCGTACAATAAAGACAAAACCTACAACCAGGCCAGACAGGTGTGTGC
AGCGGACGGAGGGCTTCTGGCCATGCCGAGGGACAAAGACGAGGACAACT
TCTTGAGGGACCTGAAGAACAGCGTGGATCCCAACTCCCCTTTCTGGTTC
GGCCTGAGCAGTCAGAAAAGCGAGGGTGGTTGGGTGTGGGAAGACGGGAC
TCCATACAACACAGCCGCAGACCGACAGTATGGGGGATGGCAGCTGGGGG
AACCCAGCAATAAAGGAGGAGGGGGAGGAGTCTGCGCCAACCACTTCGAA
ACTGGATGGAACGACGCGCCCTGCTCGTCTGCGCAGAAGTTCATCTGCCA
GCTGAATGGTGGTATGTCATTTAACAATATATAGTTACACATTACATGCG
CACAACACAATCAGACAATGTCTATATTGTTAGCAGTTAGATGCTGCAAT
ATCTACTGTTGTGTCTTTTGATTTGTGAAAGGTATAAGCAAGTTTCACCA
AAAGGGCTAAAAATACTGGGTGAATGAGTTCATTCTGGTTTAAAGCTTAT
AATTAGATAACATGCTTTTCTGCAGATGGAACATAGCAAAAGGAAGAACA
CAAATAACAGGTTGTTTCTCTACGCAGCAGTCCGCTGCCCCCTGGGGTAC
CTCCGGTGCGGACACGGACATGCCTGCATCCTGGCCTGGAAGCGCTGTGA
CGGGCGGACGGACTGTTCAGACGGGAGTGACGAGGAAGGTTGTGG Coding sequence (CDS) from alignment at Sc0000286:212983..217477- >transcript:BL96735_cuf5 ID=transcript:BL96735_cuf5|Name=transcript:BL96735_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=5028bp|location=Sequence derived from alignment at Sc0000286:212983..217477- (Branchiostoma lanceolatum)
GATCAAGTTGCAGCCCAAACAACCACAGCTCTACCTTCATCCACTACAAG
AACCACAATCATGACAACTAGTACTGCGGCCACTACTACTCCTGTAACTA
CTACTACTGCGGCCACTACTACTCCTGCAACTACTACTGCGGCAACTACT
ACTCCTGGCACCACTACTCCTGTTACTACTTCTGCGGCCACTGCTACTCC
TGTAACTACTACTACGGCCACTACTACTCCTGGAACTACTACTGTGGCCA
CTACTACTCCTGAAACTCCTACTACGGCCACTTTTACTCCTGGAACTATT
ACTGCAGCCACTACTACTCCTGGAACTACTTCTGCAGCCCCTACTACTCT
TGAAGCTACTACTGTTGCTACTACTACTCCTGAAACTACTTTTGCACCCA
CTACTTCTCCTACTACTAGTACTGCTGCTACTACTCCTACTGCTACTGTT
CCTGCAACCACTACTTCTGCTTCTACTCCTGGAACTGGAACTGCTACTTC
TAATACTGCTGCTGATATTACTGGCACCACTCATGTAACTACTGCTCCTA
CTACTACTGCAACTTCTGCTGATTCTATTTCTGCTGCAAGTACTACTAGT
ACTGCTGCTACAACTTCTACTGCTGCAACTGCTGCTACTGCACCACAGTC
TGGTACATCCCAAGCGACAGTCATGCGCACCTCGTTACCAGGAGTGATGT
CACCATCACCGGGGGAAAGTACTTCAGGAGCAACAACAGGTTGTCCTCCT
GGCTACGCTCCATTCGGGGGTTCGTGCTTCAAGGCGTACAATAAAGACAA
AACCTACAACCAGGCCAGACAGGTGTGTGCAGCGGACGGAGGGCTTCTGG
CCATGCCGAGGGACAAAGACGAGGACAACTTCTTGAGGGACCTGAAGAAC
AGCGTGGATCCCAACTCCCCTTTCTGGTTCGGCCTGAGCAGTCAGAAAAG
CGAGGGTGGTTGGGTGTGGGAAGACGGGACTCCATACAACACAGCCGCAG
ACCGACAGTATGGGGGATGGCAGCTGGGGGAACCCAGCAATAAAGGAGGA
GGGGGAGGAGTCTGCGCCAACCACTTCGAAACTGGATGGAACGACGCGCC
CTGCTCGTCTGCGCAGAAGTTCATCTGCCAGCTGAATGGTGCAGTCCGCT
GCCCCCTGGGGTACCTCCGGTGCGGACACGGACATGCCTGCATCCTGGCC
TGGAAGCGCTGTGACGGGCGGACGGACTGTTCAGACGGGAGTGACGAGGA
AGGTTGTGATCAAGTTGCAGCCCAAACAACCACAGCTCTACCTTCATCCA
CTACAAGAACCACAATCATGACAACTAGTACTGCGGCCACTACTACTCCT
GTAACTACTACTACTGCGGCCACTACTACTCCTGCAACTACTACTGCGGC
AACTACTACTCCTGGCACCACTACTCCTGTTACTACTTCTGCGGCCACTG
CTACTCCTGTAACTACTACTACGGCCACTACTACTCCTGGAACTACTACT
GTGGCCACTACTACTCCTGAAACTCCTACTACGGCCACTTTTACTCCTGG
AACTATTACTGCAGCCACTACTACTCCTGGAACTACTTCTGCAGCCCCTA
CTACTCTTGAAGCTACTACTGTTGCTACTACTACTCCTGAAACTACTTTT
GCACCCACTACTTCTCCTACTACTAGTACTGCTGCTACTACTCCTACTGC
TACTGTTCCTGCAACCACTACTTCTGCTTCTACTCCTGGAACTGGAACTG
CTACTTCTAATACTGCTGCTGATATTACTGGCACCACTCATGTAACTACT
GCTCCTACTACTACTGCAACTTCTGCTGATTCTATTTCTGCTGCAAGTAC
TACTAGTACTGCTGCTACAACTTCTACTGCTGCAACTGCTGCTACTGCAC
CACAGTCTGGTACATCCCAAGCGACAGTCATGCGCACCTCGTTACCAGGA
GTGATGTCACCATCACCGGGGGAAAGTACTTCAGGAGCAACAACAGGTTG
TCCTCCTGGCTACGCTCCATTCGGGGGTTCGTGCTTCAAGGCGTACAATA
AAGACAAAACCTACAACCAGGCCAGACAGGTGTGTGCAGCGGACGGAGGG
CTTCTGGCCATGCCGAGGGACAAAGACGAGGACAACTTCTTGAGGGACCT
GAAGAACAGCGTGGATCCCAACTCCCCTTTCTGGTTCGGCCTGAGCAGTC
AGAAAAGCGAGGGTGGTTGGGTGTGGGAAGACGGGACTCCATACAACACA
GCCGCAGACCGACAGTATGGGGGATGGCAGCTGGGGGAACCCAGCAATAA
AGGAGGAGGGGGAGGAGTCTGCGCCAACCACTTCGAAACTGGATGGAACG
ACGCGCCCTGCTCGTCTGCGCAGAAGTTCATCTGCCAGCTGAATGGTGCA
GTCCGCTGCCCCCTGGGGTACCTCCGGTGCGGACACGGACATGCCTGCAT
CCTGGCCTGGAAGCGCTGTGACGGGCGGACGGACTGTTCAGACGGGAGTG
ACGAGGAAGGTTGTGATCAAGTTGCAGCCCAAACAACCACAGCTCTACCT
TCATCCACTACAAGAACCACAATCATGACAACTAGTACTGCGGCCACTAC
TACTCCTGTAACTACTACTACTGCGGCCACTACTACTCCTGCAACTACTA
CTGCGGCAACTACTACTCCTGGCACCACTACTCCTGTTACTACTTCTGCG
GCCACTGCTACTCCTGTAACTACTACTACGGCCACTACTACTCCTGGAAC
TACTACTGTGGCCACTACTACTCCTGAAACTCCTACTACGGCCACTTTTA
CTCCTGGAACTATTACTGCAGCCACTACTACTCCTGGAACTACTTCTGCA
GCCCCTACTACTCTTGAAGCTACTACTGTTGCTACTACTACTCCTGAAAC
TACTTTTGCACCCACTACTTCTCCTACTACTAGTACTGCTGCTACTACTC
CTACTGCTACTGTTCCTGCAACCACTACTTCTGCTTCTACTCCTGGAACT
GGAACTGCTACTTCTAATACTGCTGCTGATATTACTGGCACCACTCATGT
AACTACTGCTCCTACTACTACTGCAACTTCTGCTGATTCTATTTCTGCTG
CAAGTACTACTAGTACTGCTGCTACAACTTCTACTGCTGCAACTGCTGCT
ACTGCACCACAGTCTGGTACATCCCAAGCGACAGTCATGCGCACCTCGTT
ACCAGGAGTGATGTCACCATCACCGGGGGAAAGTACTTCAGGAGCAACAA
CAGGTTGTCCTCCTGGCTACGCTCCATTCGGGGGTTCGTGCTTCAAGGCG
TACAATAAAGACAAAACCTACAACCAGGCCAGACAGGTGTGTGCAGCGGA
CGGAGGGCTTCTGGCCATGCCGAGGGACAAAGACGAGGACAACTTCTTGA
GGGACCTGAAGAACAGCGTGGATCCCAACTCCCCTTTCTGGTTCGGCCTG
AGCAGTCAGAAAAGCGAGGGTGGTTGGGTGTGGGAAGACGGGACTCCATA
CAACACAGCCGCAGACCGACAGTATGGGGGATGGCAGCTGGGGGAACCCA
GCAATAAAGGAGGAGGGGGAGGAGTCTGCGCCAACCACTTCGAAACTGGA
TGGAACGACGCGCCCTGCTCGTCTGCGCAGAAGTTCATCTGCCAGCTGAA
TGGTGCAGTCCGCTGCCCCCTGGGGTACCTCCGGTGCGGACACGGACATG
CCTGCATCCTGGCCTGGAAGCGCTGTGACGGGCGGACGGACTGTTCAGAC
GGGAGTGACGAGGAAGGTTGTGATCAAGTTGCAGCCCAAACAACCACAGC
TCTACCTTCATCCACTACAAGAACCACAATCATGACAACTAGTACTGCGG
CCACTACTACTCCTGTAACTACTACTACTGCGGCCACTACTACTCCTGCA
ACTACTACTGCGGCAACTACTACTCCTGGCACCACTACTCCTGTTACTAC
TTCTGCGGCCACTGCTACTCCTGTAACTACTACTACGGCCACTACTACTC
CTGGAACTACTACTGTGGCCACTACTACTCCTGAAACTCCTACTACGGCC
ACTTTTACTCCTGGAACTATTACTGCAGCCACTACTACTCCTGGAACTAC
TTCTGCAGCCCCTACTACTCTTGAAGCTACTACTGTTGCTACTACTACTC
CTGAAACTACTTTTGCACCCACTACTTCTCCTACTACTAGTACTGCTGCT
ACTACTCCTACTGCTACTGTTCCTGCAACCACTACTTCTGCTTCTACTCC
TGGAACTGGAACTGCTACTTCTAATACTGCTGCTGATATTACTGGCACCA
CTCATGTAACTACTGCTCCTACTACTACTGCAACTTCTGCTGATTCTATT
TCTGCTGCAAGTACTACTAGTACTGCTGCTACAACTTCTACTGCTGCAAC
TGCTGCTACTGCACCACAGTCTGGTACATCCCAAGCGACAGTCATGCGCA
CCTCGTTACCAGGAGTGATGTCACCATCACCGGGGGAAAGTACTTCAGGA
GCAACAACAGGTTGTCCTCCTGGCTACGCTCCATTCGGGGGTTCGTGCTT
CAAGGCGTACAATAAAGACAAAACCTACAACCAGGCCAGACAGGTGTGTG
CAGCGGACGGAGGGCTTCTGGCCATGCCGAGGGACAAAGACGAGGACAAC
TTCTTGAGGGACCTGAAGAACAGCGTGGATCCCAACTCCCCTTTCTGGTT
CGGCCTGAGCAGTCAGAAAAGCGAGGGTGGTTGGGTGTGGGAAGACGGGA
CTCCATACAACACAGCCGCAGACCGACAGTATGGGGGATGGCAGCTGGGG
GAACCCAGCAATAAAGGAGGAGGGGGAGGAGTCTGCGCCAACCACTTCGA
AACTGGATGGAACGACGCGCCCTGCTCGTCTGCGCAGAAGTTCATCTGCC
AGCTGAATGGTGCAGTCCGCTGCCCCCTGGGGTACCTCCGGTGCGGACAC
GGACATGCCTGCATCCTGGCCTGGAAGCGCTGTGACGGGCGGACGGACTG
TTCAGACGGGAGTGACGAGGAAGGTTGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000286 | genome | Sc0000286:212983..217477 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96735_cuf5 |
| Biotype | protein_coding |
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