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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96728_cuf1 >transcript:BL96728_cuf1-protein ID=transcript:BL96728_cuf1-protein|Name=transcript:BL96728_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=238bp
MARLLYLLLLANMFNSSFQGGCPTVRISGHGNYIQFTTYTMTRELHDDRP
VYRSSHRDYLFYDRTYSSWSVGDTVGSPLVALYVVDSSMYADSTSGTWYS
SNSNRPGHSPNHYIRASCDDPYRRVNGQWSYWSSWSSCQWYCICGNSTCV
PDTTTRSRRCITPPPRNGGSNCAGSSSSTRDCPCRDINECLDDTLNNCDL
DNGSCVNTQGSFHCECDDGYNIQADGRTCQGRLYSICW Run BLAST on NCBI mRNA from alignment at Sc0000187:321372..324403- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96728_cuf1 ID=transcript:BL96728_cuf1|Name=transcript:BL96728_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3032bp|location=Sequence derived from alignment at Sc0000187:321372..324403- (Branchiostoma lanceolatum)
ATTTACCCCACGCGGCGACGACCAAACAAATATGTTAGTTTACTCTTAGT
ACTTTAGACTTTCCCAACCACTTTCACACGATATTCACAAGGAAAGAAGG
AGTTGACCCACACTGAAGCAACGCGACGTTGATATGGCTCGATTGCTGTA
TCTGCTTTTGTTGGCGAATATGTTCAACAGTTCCTTCCAAGGAGGTATGT
TAGCAGTATGATGACATATAAGCTGAACCGTTATTAGATAACATGCTTGT
TGACAACTCGCTTCCTCGCACTGCTATATCTGTACATTTGACTACATTTT
ATTAAAGACGTTGTCTGAAAATTCTCTCAGGAATGATATTCTTGGAGTTA
TGTCTATGAATTTGCAGCAAATGATTGTTTTGTGTAGTAAGCTTGGTAAG
ATGAAGACCAGCCTTTATCTCAGGATGTTTTCTTGTTTTTCTCAGTTTGA
GAGTAATGTTTGGGCTGTGACCGATTCATTGTGAGGTCTTAATTAAGATT
AAACAAATATCGATATCAGACAATGTTTTAGAAGGATCCTTTGACTTTGA
CAACCTAATCCATTGAGAAATATCAGGGTCTGTTATTCTATTTATCTCAT
ACACACAATTATTCCAAACATATTACCTTAACATAAACTTGAGCTATGGG
TGCCATGTAACTTTTTGGTGACGCCTCAGGGGTGGAGCTTTCTTCACAAA
CTTATCAAATATTACGGAGACTATAGCTTTTTTCTAAGCTTTGGAAATTG
TGTTTATTACCATTTACAACGAAACGTTATTTGTTATGTTCATACATGTG
AGGCAAGGACGTGAGAACTGATTATGGAAGTGTCCAAATTCCCATTCCAG
CCTCAGTGCTTGACATTTGGCAGGGACTGTTCTGTTTGGCGACCGCTACA
GATTGGGGCATAGGATGGAATATTTTGATATCTATTACAGCTGTTTATTT
GCCAAGTTTGATTCAGATGATCCATTTTTAGTCAATCTGGTGAACAGAAT
TAGCCAGTGAATAGAGCTGTTATTTGGAATGTCTTAGTGAACAAAGTTGT
TATTGTGTATTCAAAGGTTGCCCGACTGTCCGAATTTCTGGACATGGCAA
CTACATACAGTTTACAACCTACACCATGACGAGAGAGCTTCACGATGATC
GCCCAGTGTACAGATCTTCGCATCGCGACTATCTGTTCTACGACCGAACA
TACAGCTCTTGGAGTGTTGGCGACACTGTGGGGAGTCCACTGGTGGCACT
GTACGTAGTAGACTCCAGCATGTACGCAGACAGCACATCCGGCACCTGGT
ATAGTTCCAACTCTAACCGCCCTGGTCATAGTCCAAACCATTATATAAGA
GCCAGTTGCGACGGTAAGTATTACGATTCATTGTTTGACGACCCCATACC
TTCGCCAAATCATGTTAACCTTTTCAAGTGACGTATCAAAATGCTTATTT
ATTATGCAAATAATCCTCATCTGCATAAATCATATCAGTTGATCATTTCT
ACCCAAATATGTTTGTTGTTGAAAATATGAAATTTTATATTAGCCAAGAA
GGTTATTGTAGCATTTCTTCATGAATTATGTACATGGGGCCCTCATTTTC
ATTATCTATGTCTAACAATGTTCATCTTTACTTAGCTTAATACTGGTATG
AAATTCCCGTCATTTACCACCACTACTGAATTATAATATTTTCTCATTAA
TTATACAAATGACGTCAATCAATCCCTTTTTTCTCAGACGTCGTATGTCA
CATGTTTTAGACTCCTAACATGGGGTGCAGTGAACTTATAAATTCTCCTC
CTCAATTATGCACATTAACTTCAGACATTGATTTGCATGATTAGTGTCTG
ATCATGTAATTTATCGCTCGAGTTACCTACGTAGCGACTATCATGACAAT
CCGGGAACTCCTTGAGTTATTCTCTTTCAAAGTCGAAAAAAAAAAGCCAC
CGAAGTCCCGATAAAGCCGATAGGTGCACAAAACTACACCACTTATACTC
TCTGTTCCAAGAGCCACAAAACTAACGAAAGCCCAAAGCAACAACGACGT
TCCAGGGGTTTTTCGTTGGCTGCGCGCAGAGGCAGCGCGCAGAGGCTGTG
TGCAGAGGTAGTGAGTGGAGGCAGCGAGCGGTACTCTCCAAGTAGAAGTT
AGGCTCCGACTTGTTTTTGCTGTATCTATATACGTTTTTGTCGGGCTTTC
TGTTTTGTCAGGTTTTACTTTTGTGCGGCGGTCAACTAGTGCGTTGGCCA
CTCACCCATACACTCTCCGTCTTTTTTTCCCAGATCCGTATAGAAGAGTC
AACGGGCAGTGGTCCTACTGGAGTAGCTGGTCTTCATGCCAGTGGTACTG
CATCTGTGGCAACAGCACCTGCGTGCCGGACACCACCACCCGAAGTCGCC
GGTGTATCACTCCGCCTCCTCGAAATGGCGGTTCAAACTGCGCAGGGAGC
TCCTCGAGTACGCGGGATTGTCCCTGCCGGGGTGAGAGGCATCATTATAG
ACTGTTAGATAAACGAATATTGATAGAGAAATAGATCAAATGATCATCAC
GCTTTTCCAAACAGAAGTGCTCTCTTTGCATTCGCACGGTCGTGCGTTCA
AACCCCAGTCGGGTTACACCAAAGACTTTAAAAGTGGTACATGCATGCTT
AGCACTCAGCACTTACGAGAAATACTAGTTGTTGAACACACATCACTGCA
GCAGTGGACTTGTGCAAATGGATAACTTACCCCGTGGTTTAATAGAAAGG
CATTTGATACTTGACCATCACGTATATTGCTATATGCAGTTGCAAGATGA
AGATAATGCATCTCTTCTTGTCTAATGCAATGCATCTATAGAAGTACTAA
ATATCAATCGAATTCTGTTTGCAGATATTAACGAGTGTTTGGACGATACG
CTCAACAACTGCGACCTTGACAACGGTTCGTGTGTGAATACGCAGGGATC
GTTCCACTGCGAGTGTGACGATGGGTACAACATACAGGCAGATGGGAGGA
CTTGCCAAGGTCGTCTGTATAGTATATGCTGG Coding sequence (CDS) from alignment at Sc0000187:321372..324403- >transcript:BL96728_cuf1 ID=transcript:BL96728_cuf1|Name=transcript:BL96728_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2856bp|location=Sequence derived from alignment at Sc0000187:321372..324403- (Branchiostoma lanceolatum)
ATGGCTCGATTGCTGTATCTGCTTTTGTTGGCGAATATGTTCAACAGTTC
CTTCCAAGGAGGTTGCCCGACTGTCCGAATTTCTGGACATGGCAACTACA
TACAGTTTACAACCTACACCATGACGAGAGAGCTTCACGATGATCGCCCA
GTGTACAGATCTTCGCATCGCGACTATCTGTTCTACGACCGAACATACAG
CTCTTGGAGTGTTGGCGACACTGTGGGGAGTCCACTGGTGGCACTGTACG
TAGTAGACTCCAGCATGTACGCAGACAGCACATCCGGCACCTGGTATAGT
TCCAACTCTAACCGCCCTGGTCATAGTCCAAACCATTATATAAGAGCCAG
TTGCGACGATCCGTATAGAAGAGTCAACGGGCAGTGGTCCTACTGGAGTA
GCTGGTCTTCATGCCAGTGGTACTGCATCTGTGGCAACAGCACCTGCGTG
CCGGACACCACCACCCGAAGTCGCCGGTGTATCACTCCGCCTCCTCGAAA
TGGCGGTTCAAACTGCGCAGGGAGCTCCTCGAGTACGCGGGATTGTCCCT
GCCGGGATATTAACGAGTGTTTGGACGATACGCTCAACAACTGCGACCTT
GACAACGGTTCGTGTGTGAATACGCAGGGATCGTTCCACTGCGAGTGTGA
CGATGGGTACAACATACAGGCAGATGGGAGGACTTGCCAAGGTCGTCTGT
ATAGTATATGCTGGATGGCTCGATTGCTGTATCTGCTTTTGTTGGCGAAT
ATGTTCAACAGTTCCTTCCAAGGAGGTTGCCCGACTGTCCGAATTTCTGG
ACATGGCAACTACATACAGTTTACAACCTACACCATGACGAGAGAGCTTC
ACGATGATCGCCCAGTGTACAGATCTTCGCATCGCGACTATCTGTTCTAC
GACCGAACATACAGCTCTTGGAGTGTTGGCGACACTGTGGGGAGTCCACT
GGTGGCACTGTACGTAGTAGACTCCAGCATGTACGCAGACAGCACATCCG
GCACCTGGTATAGTTCCAACTCTAACCGCCCTGGTCATAGTCCAAACCAT
TATATAAGAGCCAGTTGCGACGATCCGTATAGAAGAGTCAACGGGCAGTG
GTCCTACTGGAGTAGCTGGTCTTCATGCCAGTGGTACTGCATCTGTGGCA
ACAGCACCTGCGTGCCGGACACCACCACCCGAAGTCGCCGGTGTATCACT
CCGCCTCCTCGAAATGGCGGTTCAAACTGCGCAGGGAGCTCCTCGAGTAC
GCGGGATTGTCCCTGCCGGGATATTAACGAGTGTTTGGACGATACGCTCA
ACAACTGCGACCTTGACAACGGTTCGTGTGTGAATACGCAGGGATCGTTC
CACTGCGAGTGTGACGATGGGTACAACATACAGGCAGATGGGAGGACTTG
CCAAGGTCGTCTGTATAGTATATGCTGGATGGCTCGATTGCTGTATCTGC
TTTTGTTGGCGAATATGTTCAACAGTTCCTTCCAAGGAGGTTGCCCGACT
GTCCGAATTTCTGGACATGGCAACTACATACAGTTTACAACCTACACCAT
GACGAGAGAGCTTCACGATGATCGCCCAGTGTACAGATCTTCGCATCGCG
ACTATCTGTTCTACGACCGAACATACAGCTCTTGGAGTGTTGGCGACACT
GTGGGGAGTCCACTGGTGGCACTGTACGTAGTAGACTCCAGCATGTACGC
AGACAGCACATCCGGCACCTGGTATAGTTCCAACTCTAACCGCCCTGGTC
ATAGTCCAAACCATTATATAAGAGCCAGTTGCGACGATCCGTATAGAAGA
GTCAACGGGCAGTGGTCCTACTGGAGTAGCTGGTCTTCATGCCAGTGGTA
CTGCATCTGTGGCAACAGCACCTGCGTGCCGGACACCACCACCCGAAGTC
GCCGGTGTATCACTCCGCCTCCTCGAAATGGCGGTTCAAACTGCGCAGGG
AGCTCCTCGAGTACGCGGGATTGTCCCTGCCGGGATATTAACGAGTGTTT
GGACGATACGCTCAACAACTGCGACCTTGACAACGGTTCGTGTGTGAATA
CGCAGGGATCGTTCCACTGCGAGTGTGACGATGGGTACAACATACAGGCA
GATGGGAGGACTTGCCAAGGTCGTCTGTATAGTATATGCTGGATGGCTCG
ATTGCTGTATCTGCTTTTGTTGGCGAATATGTTCAACAGTTCCTTCCAAG
GAGGTTGCCCGACTGTCCGAATTTCTGGACATGGCAACTACATACAGTTT
ACAACCTACACCATGACGAGAGAGCTTCACGATGATCGCCCAGTGTACAG
ATCTTCGCATCGCGACTATCTGTTCTACGACCGAACATACAGCTCTTGGA
GTGTTGGCGACACTGTGGGGAGTCCACTGGTGGCACTGTACGTAGTAGAC
TCCAGCATGTACGCAGACAGCACATCCGGCACCTGGTATAGTTCCAACTC
TAACCGCCCTGGTCATAGTCCAAACCATTATATAAGAGCCAGTTGCGACG
ATCCGTATAGAAGAGTCAACGGGCAGTGGTCCTACTGGAGTAGCTGGTCT
TCATGCCAGTGGTACTGCATCTGTGGCAACAGCACCTGCGTGCCGGACAC
CACCACCCGAAGTCGCCGGTGTATCACTCCGCCTCCTCGAAATGGCGGTT
CAAACTGCGCAGGGAGCTCCTCGAGTACGCGGGATTGTCCCTGCCGGGAT
ATTAACGAGTGTTTGGACGATACGCTCAACAACTGCGACCTTGACAACGG
TTCGTGTGTGAATACGCAGGGATCGTTCCACTGCGAGTGTGACGATGGGT
ACAACATACAGGCAGATGGGAGGACTTGCCAAGGTCGTCTGTATAGTATA
TGCTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000187 | genome | Sc0000187:321372..324403 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96728_cuf1 |
| Biotype | protein_coding |
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