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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96727_cuf0 >transcript:BL96727_cuf0-protein ID=transcript:BL96727_cuf0-protein|Name=transcript:BL96727_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=135bp
IDIDECADNSTCVNGVCTNSIGSYNCTCNSGYWKNATTQNCADIDECTDD
NTCVRVNGRCTNAPGNYTCTCNSGYRMNPTTQKCEGLSIGAIVGISLGAA
AAVLITAVVFYCCCCKKSGSVATAGHAWPVNETSP Run BLAST on NCBI mRNA from alignment at Sc0000187:316969..321145- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96727_cuf0 ID=transcript:BL96727_cuf0|Name=transcript:BL96727_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4177bp|location=Sequence derived from alignment at Sc0000187:316969..321145- (Branchiostoma lanceolatum)
TATAGATATTGATGAATGCGCAGATAACAGCACGTGTGTGAACGGCGTGT
GTACAAACTCCATCGGGAGCTACAACTGTACCTGCAACAGTGGTTACTGG
AAGAACGCCACGACACAGAACTGTGCCGGTGAAATGATTTTCCATGCATA
TCCGATAGAGAAATGAATAGAGACATAGATGAAGTGATAACATTCAAGTT
TTTCCCCCGATTCAACGTCCCGATGACTCCTACAATGAATCCTTCTTTCA
TGTAATGTTTATTATTTTTCAAATTCTTTTCTGTAATCTATTTTTTTAAC
TCCCCTTAAAGAAAACCATCACAGTCATCACGATGGTTAAGAAAAATAGC
CTCGTCCAAGGAAGAGGGATACCAAACTATCCATTTTTCTGGACATAAAC
TGCCCTTAGCAATCATAGTAATCAAGAAAATCATAGCACAAGTTTGCTCG
TTTAAAACAATGTCGTTAACGCTTTGGGGCACTTTTAAGAAATCACCAGG
AATAGACTTTCTGATTAAAAGTTTTAATATCTTGTCAAAAGCAGTCATAT
AGGGTGTATAACGTTTATAGAATGTCAGTGCTTAGTTTGTGCCAGGACTC
CCGACAAGGAGTATATAGATATGATATCTGAATTAGATTAATTGATCATG
GAGATTGTCCTCGCTCCTTGTCACGTTTGCAGATATCGACGAGTGTACAG
ATGACAATACGTGTGTGCGTGTGAACGGCAGGTGCACCAATGCACCAGGG
AATTACACCTGTACCTGCAACAGTGGTTACAGGATGAACCCGACCACACA
GAAGTGCGAAGGTGAGATGTAATTAAGGCTGAGTTAACCAATTGTTGCGG
AGCTATATAAAGGTGAAATAACAATGATCCCCCAACCAATTGCTGTATAA
CGCTCATAGGACTTCTTCGTTTAGATTGTTCTTTTTTAAATCACACTCAT
TATGCATTTGCAAGATATTTTGGGTGATGAGATGGCCTTTGGCAGATCTG
GATTTGGTATGATTCAAACTTTTCGAACTAGAAAGGCAACATTTGCGAGC
AAATACAGCATGTTTAGCCATACTCCTCGCCATGCAAAAAATGGACTGTC
CCAAAATAACAATGGACCATTCTAAAATACTTCCACTAAAAAAATGGATC
ACCCCAGTCCAAAATTGAGTTTAAAAACAATTAGTCTCTCCATACAGGAA
TGGAGTCTTCCAGTAGCACCTCAACACAATATGGACCAGTCCAAAACCAT
ATCCACATAAACAAATACACTACTGCTAACAAATGGACTTTTTCATAGTC
ACTCCAGCTCAAAATTGAAATAAATGATTAAAGAATCCTGCCCTTGCAAG
AATGGGATATTCCGTGCCATCTCGATGTAAACTAGACCAGTCGAAAAATA
TCCGCTCAAAATTACACTCTTGCGCATAATCACATGCCAAATTTTGCATC
ATTTTGGTTTAATACATAGGAACTGGAGATGTGTATCTTTGTTCAAAAAA
GGGTGAACAAAACCATGTAAGCACATGTCCTGCGCATTCCCATACCACAT
TTGGTTTGAATACTACAAATGTAGCACACCTGCGCCAGAAATGCAAGATA
AATTAATTAACTCAATTGGCCAATCGGGTTGTCGCAAGGCTCACAGCCAG
GCCATGTGCAATTGGGGTCACTGACCTTTAGGTCACAGCCAGGCCAGGTG
CAATTGGGGTCACTGACCTTTAGGTCATATGAGGAAAATACCCAATGTTT
TCCTCAAAATACCCTGCAAAATCGTATTTTGAAGTAATGTTTGCCAAAAG
TGCGAATGGGGTTCTCTGAATATTTGTTTAATGTACCCCCATAGCAAATT
TCAGGTCATTTGGATGTATTTCCAGAGCACAGGAGGCCAAAATGTACGTT
TTTTGTCAGAAAAAACTCAATAAGATCACTTTCAAGGTCAATATTGAAAA
AATTTAAAAAAAATCCGGTGGTATTTGCCTACACTACCTTTGTACCAAAT
TTCAGGTCATTTGGTCAAAAAATGACAGAGATGAATCGATTTGAAGATTT
GACAGGAAGAGAAGAAGAAGAAACATGAGTAAAAGCAATATGTTGAGCCA
TACTAGGTATGGCTAAACATAAAAAAGTAAGATGTTATGATGAATTGGTA
CATTTGCAAACGAAAATGCGTATTATTAAGCTCTTGCAAGCATGTTTCAA
TATGTCCCCTCAAAGTTCCAAAAGCGCGTGTTTGGAGCGCTTCTCCATGC
ATGGACCTTTCTTTACTTCTGAGGGACCGTAACCTCTGACCCTATCCACA
ACCCCCTGCGGTGCTGTAACTGTGAGATGGCTTATCCTTTTTTGTATGAC
TACTTATTCTTTTCCAGGACTGTCCATTGGAGCGATCGTTGGCATCTCAC
TTGGGGCTGCTGCGGCTGTGCTCATTACCGCAGTTGTTTTCTACTGCTGT
TGCTGTAAGAAGAGCGGGTCTGTGGCGACTGCGGGGCATGCTTGGCCTGT
CAATGAGACGTCACCTTAGGTACCCTAAGCGATTTCAAGGGGTGAATCTG
GAAGTATTCTGGAGAAGGCAATCTGTATGAAATTGAAATTTACGTCCATA
TATTAGCACATTTGCATCATTATTTCATACTTTGAGCATTTAAAAAGAGC
ACAGAAACAAGCCGAAAAATGAGTATTTTATTTTTGGTACCACCCAATAA
TCAGCCCATAATCCAGCCGTAACAGTTTAACATTTCTGTCGACAATTTTC
GATAACTTCCCGCAGCGTCACAATGTCCAAGCATATTGAACCATGACCAC
GTGATTAATTCTTCGGAAGCGTTCGGGACTCATCGGTCATCATGTTCGGA
AGATTTGAAATGATGGCTGGCCTTCAAGAGCTCAGATTTTCAATGAGTTC
CCACCATATATATAACGACATCGCATCTTTGCTCCTTGATGATATGGATA
TGCAATGGGATAGTGCGTTATCTAAACTTACTATGGACAGAAATCACTAG
AAAATTGATTTTGAAAATATGGATTTCAACACCCAAACATGCATATGCTT
TGGGCACTTTTAAGCTGAGAGGCTACCTCTCAGATTTGACATAGGGCAAA
TGTGATTTTTTTTTTAAAACTCGTTATGTAATAGAACAAGTGGTTAATTA
ACACGAAGTCTTAAAGACTATGCAAAACGAACAACCTACCAAGTCTGTGA
TATTGTTTACCTGACTTTACATCCGTGCGCGCATCAATTTTCGTCCGTTG
CCAAAAAGGTTTCATACTGTACATTGAACAAAGAAGCTGCGCAATGAGAA
AATAAATGTCATAAGTTGCAAAAACATTGGAAAACGAATACTAATGTCAC
GCAATGCCTCTTTTCCTATCGTAAAACATACTGAATTGTCGTAAATTTAC
TCCTCCATGCACAATATGCATTTCGAGCCCTCAGCGGAGCTTTCTAAAGT
CTTCCAAGAGACAAGGTAGCCACCATATAGGCAATTTTGGCCCAACTTGT
TTCACCTCTACCAAGTCACACTTTTAGGACCACGTCAATAACGCAGGAGT
AGAGACAACAGCAACAGCCACTACAGTCTGAGTCAGTTCATTTCACTTCA
TGAGGAAGCAGGTTTGACTAGTCAAGTGAATTTAACGTAACATATGTATC
ACCGTTACCGATGGACCTGTCGAAGATGCAAGCAGAGGTAACGTTAGCAT
TACTTTTCGGTTCGGTTTGTTGTATGACAGTTACTATGTGTAGTGGATGT
ATGGTTTCCGGGAGAAAAATGTCGACTTATCTCTCCAGCTACTGTTACTT
GGTTACCAGCCTTTCCTTGGGCTGTAGGCTGGTGACACTGTAAGCTCGAA
ATACAGCCTCCTAAGCCCTTCTGGAGATTTTGTCCTTATTGGAAACAATG
CTGCCGTCGGCGGTAGAAGCTTAATTTCCAGGCAAGCAGATGTATCTGTC
GGGATTGTTTTGTAGTCTTTTCTGCGTTGCTATGTCTCTCTGTAGAGATG
CATTTTTTTCTGTTCCACTTCTCCATCTGCTTGTACTTAGGAGAAGCTTA
CAGTGGCCTAGAATATCCGTTTGTAACCCTGGCATGGAAGAGTCCTGTTA
ATTCGTGTAGACTGTATACAGACAGGAAACAATGCGTGTAGTAAACTGAA
GCGTACCAACAAGAAGACATAAGGATC Coding sequence (CDS) from alignment at Sc0000187:316969..321145- >transcript:BL96727_cuf0 ID=transcript:BL96727_cuf0|Name=transcript:BL96727_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1224bp|location=Sequence derived from alignment at Sc0000187:316969..321145- (Branchiostoma lanceolatum)
ATAGATATTGATGAATGCGCAGATAACAGCACGTGTGTGAACGGCGTGTG
TACAAACTCCATCGGGAGCTACAACTGTACCTGCAACAGTGGTTACTGGA
AGAACGCCACGACACAGAACTGTGCCGATATCGACGAGTGTACAGATGAC
AATACGTGTGTGCGTGTGAACGGCAGGTGCACCAATGCACCAGGGAATTA
CACCTGTACCTGCAACAGTGGTTACAGGATGAACCCGACCACACAGAAGT
GCGAAGGACTGTCCATTGGAGCGATCGTTGGCATCTCACTTGGGGCTGCT
GCGGCTGTGCTCATTACCGCAGTTGTTTTCTACTGCTGTTGCTGTAAGAA
GAGCGGGTCTGTGGCGACTGCGGGGCATGCTTGGCCTGTCAATGAGACGT
CACCTTAGATAGATATTGATGAATGCGCAGATAACAGCACGTGTGTGAAC
GGCGTGTGTACAAACTCCATCGGGAGCTACAACTGTACCTGCAACAGTGG
TTACTGGAAGAACGCCACGACACAGAACTGTGCCGATATCGACGAGTGTA
CAGATGACAATACGTGTGTGCGTGTGAACGGCAGGTGCACCAATGCACCA
GGGAATTACACCTGTACCTGCAACAGTGGTTACAGGATGAACCCGACCAC
ACAGAAGTGCGAAGGACTGTCCATTGGAGCGATCGTTGGCATCTCACTTG
GGGCTGCTGCGGCTGTGCTCATTACCGCAGTTGTTTTCTACTGCTGTTGC
TGTAAGAAGAGCGGGTCTGTGGCGACTGCGGGGCATGCTTGGCCTGTCAA
TGAGACGTCACCTTAGATAGATATTGATGAATGCGCAGATAACAGCACGT
GTGTGAACGGCGTGTGTACAAACTCCATCGGGAGCTACAACTGTACCTGC
AACAGTGGTTACTGGAAGAACGCCACGACACAGAACTGTGCCGATATCGA
CGAGTGTACAGATGACAATACGTGTGTGCGTGTGAACGGCAGGTGCACCA
ATGCACCAGGGAATTACACCTGTACCTGCAACAGTGGTTACAGGATGAAC
CCGACCACACAGAAGTGCGAAGGACTGTCCATTGGAGCGATCGTTGGCAT
CTCACTTGGGGCTGCTGCGGCTGTGCTCATTACCGCAGTTGTTTTCTACT
GCTGTTGCTGTAAGAAGAGCGGGTCTGTGGCGACTGCGGGGCATGCTTGG
CCTGTCAATGAGACGTCACCTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000187 | genome | Sc0000187:316969..321145 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96727_cuf0 |
| Biotype | protein_coding |
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