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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96680_cuf2 >transcript:BL96680_cuf2-protein ID=transcript:BL96680_cuf2-protein|Name=transcript:BL96680_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=241bp
CGCMNDYGRYFMLWERWWENGYDCVCEEENVITCIAVTGPPQIEEPCDEF
GPGYKWVLRAGVWGCYCVEYYCLDLTVCFAWGDPHYYLFDGSEHHFQGAC
RYTLAKDYGTSCDFVVEAQNQPVPVTPQYTFVSDVYVEAYGCTIGMHQGR
LVTVDGVLYTPPFSKALGKIQVGLGGLSVHVWLVNYGVIVAYDGVTHVTV
AVPNDYHGQMCGLCGNFNGNPFDDFMKPDGTIVGDVNIFGN Run BLAST on NCBI mRNA from alignment at Sc0000005:5307213..5309445- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96680_cuf2 ID=transcript:BL96680_cuf2|Name=transcript:BL96680_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2233bp|location=Sequence derived from alignment at Sc0000005:5307213..5309445- (Branchiostoma lanceolatum)
AGTGTGGTTGCATGAACGACTACGGGCGTTATTTCATGGTAAGTGCAAGT
TACTGACTAATCTTACAAAGAATTGTCTCAGACAAAAGTGCAAAATGCCT
AGCTAGTCTGTCCACAATTGTAAAAATCCAAAATGTGTATGCTTTGTTGT
TTGTTGACCAGGTACCTTCAAAATCTAAGTAGTCAGATACTCTAGAGTAC
AATCATAAACTGATCCTGAATTTCCAGTTTTGGGCCGTTTCTTCAATTGG
TAGGAATGTCTTGTTGATGGCCGCGGATGGTCTTAGTTGGTGCACATGTC
TCCTGGTTGTAACACCTCCATGAATCATCAATAATCAGGTATTAATGACT
GATTCTAACACCTGCAGCTTTGGGAACGCTGGTGGGAGAACGGATACGAC
TGTGTTTGTGAAGAGGAGAACGTCATCACTTGTATTGCCGTCACTGGACC
CCCGCAAATAGAGGAACCCTGCGATGAGTTTGGTCCAGGCTACAAATGGG
TGCTGAGAGCTGGCGTCTGGGGATGTTATTGTGTGGAATATTATTGCTTG
GGTGAGGCAGCTTCTTATGTTTCTTTTGCTATATTCTAGCTTCTGTTCTG
AAACGTTGGCAAGCTGTTTTGTTTATAGTGATTTGTAGGCTTGTGTTTCT
TCTTCGCCACTGATTGAAATTGTACTAGCAGCAACGAAAATGGTTAACTT
TTCGGAAGCCATTTCTTTAGCCAAATGTCCAATGGCATAACACTAGAATC
CGCTTGTCTGAATAACTACGTTTTTATAACCAATGTTAATGGTGAAGAAG
GGGGATCAATCCAGTCACGTTTAGGGGCCGCACACTTCACATAGCAGCAG
CGACACCTAGTTGTAGTGCGAGGTTGAGGGAGTTAGTGTTACCCTTAGGA
AGGTGGTCACCGAAATATAGGCTAGGTATGAACACTTTTATTGCAGAAAT
GACTTTATTATCTAGTTATTAACCTGATACAACGATTCAAGTTTATGTTT
TTCTTAAAACAATCATTTTATTCCCATGAAAGATTTGACCGTCTGCTTCG
CATGGGGTGATCCACACTACTACCTGTTCGACGGGAGCGAACATCACTTC
CAGGGAGCTTGCAGGTACACCCTAGCGAAGGACTATGGCACCAGCTGTGA
CTTCGTCGTGGAAGCACAGAACCAACCAGTCCCCGTAACGCCACAATATA
CCTTCGTCAGTGACGTGTACGTGGAAGCGTACGGATGTACGATCGGAATG
CATCAAGGGAGACTAGTTACAGTGAGTTACTCGTTACTGTTCCTTGTAAG
TCGCTTTCAGAGGTCATTTTGGAAATTGCATACAAAGGTCTTGCCGTCGT
TTAAGCAACTATGGAAAAAATACTTCTATAACTTACTACTTCGATGACGT
AATTATACATTTATGCTTAAGTGACGTGACCGTCTGCCTGACCTATTTAG
CCGTCCACCATCCGTATTTTGGAAAACGCAACCAACCTTGTTGACCTGGA
CAATTCTGGACTAGACAGAAATTACCCATCTCCTTTTGCTTGAAACAGGA
TCCGGAGTGCATACCTGGATAGATTGTGGGAGTAAGAATCACTCCACCAC
AATTTCTGTACTATTACATACACCAATTGGTTTACGGTAAGACGACAATA
ACTCGTCCTGTTAAGCCATAAAACTATATGTTGTTATCAAACCAAACCAA
ACAGGTTGACGGCGTGCTGTATACACCACCCTTCAGCAAAGCCTTGGGTA
AGATCCAGGTCGGCCTGGGAGGACTCTCTGTCCACGTGTGGCTGGTGAAC
TACGGCGTGATCGTCGCATATGATGGCGTCACCCATGTCACGGTGAGCAT
ATACCGAAGAGTCGACTTCGTGGATTTTGATTTCAATTTACCTCAAGCTA
AATGCATTCAGACTATGATACATGCGTAGGGATAAGATGATAAAGAAAAG
TAATTAAAGAAGTGCGAATAACCTTGCAAAAAGTGATCATTTGGTAAGTC
TCGAAACGTAAAGTTAGACATGCATGAAAGTAATGTATATCTATGCATGT
ATGTATGGCAATTAGTATAGACGCAATGTACATCAACTCTTACGTATATA
CTGCAGGTGGCAGTTCCAAACGACTACCATGGCCAGATGTGTGGTCTGTG
CGGCAACTTCAACGGTAACCCGTTTGACGATTTCATGAAGCCGGACGGGA
CCATTGTCGGGGATGTAAACATCTTTGGGAACA Coding sequence (CDS) from alignment at Sc0000005:5307213..5309445- >transcript:BL96680_cuf2 ID=transcript:BL96680_cuf2|Name=transcript:BL96680_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=3615bp|location=Sequence derived from alignment at Sc0000005:5307213..5309445- (Branchiostoma lanceolatum)
TGTGGTTGCATGAACGACTACGGGCGTTATTTCATGCTTTGGGAACGCTG
GTGGGAGAACGGATACGACTGTGTTTGTGAAGAGGAGAACGTCATCACTT
GTATTGCCGTCACTGGACCCCCGCAAATAGAGGAACCCTGCGATGAGTTT
GGTCCAGGCTACAAATGGGTGCTGAGAGCTGGCGTCTGGGGATGTTATTG
TGTGGAATATTATTGCTTGGATTTGACCGTCTGCTTCGCATGGGGTGATC
CACACTACTACCTGTTCGACGGGAGCGAACATCACTTCCAGGGAGCTTGC
AGGTACACCCTAGCGAAGGACTATGGCACCAGCTGTGACTTCGTCGTGGA
AGCACAGAACCAACCAGTCCCCGTAACGCCACAATATACCTTCGTCAGTG
ACGTGTACGTGGAAGCGTACGGATGTACGATCGGAATGCATCAAGGGAGA
CTAGTTACAGTTGACGGCGTGCTGTATACACCACCCTTCAGCAAAGCCTT
GGGTAAGATCCAGGTCGGCCTGGGAGGACTCTCTGTCCACGTGTGGCTGG
TGAACTACGGCGTGATCGTCGCATATGATGGCGTCACCCATGTCACGGTG
GCAGTTCCAAACGACTACCATGGCCAGATGTGTGGTCTGTGCGGCAACTT
CAACGGTAACCCGTTTGACGATTTCATGAAGCCGGACGGGACCATTGTCG
GGGATGTAAACATCTTTGGGAACTGTGGTTGCATGAACGACTACGGGCGT
TATTTCATGCTTTGGGAACGCTGGTGGGAGAACGGATACGACTGTGTTTG
TGAAGAGGAGAACGTCATCACTTGTATTGCCGTCACTGGACCCCCGCAAA
TAGAGGAACCCTGCGATGAGTTTGGTCCAGGCTACAAATGGGTGCTGAGA
GCTGGCGTCTGGGGATGTTATTGTGTGGAATATTATTGCTTGGATTTGAC
CGTCTGCTTCGCATGGGGTGATCCACACTACTACCTGTTCGACGGGAGCG
AACATCACTTCCAGGGAGCTTGCAGGTACACCCTAGCGAAGGACTATGGC
ACCAGCTGTGACTTCGTCGTGGAAGCACAGAACCAACCAGTCCCCGTAAC
GCCACAATATACCTTCGTCAGTGACGTGTACGTGGAAGCGTACGGATGTA
CGATCGGAATGCATCAAGGGAGACTAGTTACAGTTGACGGCGTGCTGTAT
ACACCACCCTTCAGCAAAGCCTTGGGTAAGATCCAGGTCGGCCTGGGAGG
ACTCTCTGTCCACGTGTGGCTGGTGAACTACGGCGTGATCGTCGCATATG
ATGGCGTCACCCATGTCACGGTGGCAGTTCCAAACGACTACCATGGCCAG
ATGTGTGGTCTGTGCGGCAACTTCAACGGTAACCCGTTTGACGATTTCAT
GAAGCCGGACGGGACCATTGTCGGGGATGTAAACATCTTTGGGAACTGTG
GTTGCATGAACGACTACGGGCGTTATTTCATGCTTTGGGAACGCTGGTGG
GAGAACGGATACGACTGTGTTTGTGAAGAGGAGAACGTCATCACTTGTAT
TGCCGTCACTGGACCCCCGCAAATAGAGGAACCCTGCGATGAGTTTGGTC
CAGGCTACAAATGGGTGCTGAGAGCTGGCGTCTGGGGATGTTATTGTGTG
GAATATTATTGCTTGGATTTGACCGTCTGCTTCGCATGGGGTGATCCACA
CTACTACCTGTTCGACGGGAGCGAACATCACTTCCAGGGAGCTTGCAGGT
ACACCCTAGCGAAGGACTATGGCACCAGCTGTGACTTCGTCGTGGAAGCA
CAGAACCAACCAGTCCCCGTAACGCCACAATATACCTTCGTCAGTGACGT
GTACGTGGAAGCGTACGGATGTACGATCGGAATGCATCAAGGGAGACTAG
TTACAGTTGACGGCGTGCTGTATACACCACCCTTCAGCAAAGCCTTGGGT
AAGATCCAGGTCGGCCTGGGAGGACTCTCTGTCCACGTGTGGCTGGTGAA
CTACGGCGTGATCGTCGCATATGATGGCGTCACCCATGTCACGGTGGCAG
TTCCAAACGACTACCATGGCCAGATGTGTGGTCTGTGCGGCAACTTCAAC
GGTAACCCGTTTGACGATTTCATGAAGCCGGACGGGACCATTGTCGGGGA
TGTAAACATCTTTGGGAACTGTGGTTGCATGAACGACTACGGGCGTTATT
TCATGCTTTGGGAACGCTGGTGGGAGAACGGATACGACTGTGTTTGTGAA
GAGGAGAACGTCATCACTTGTATTGCCGTCACTGGACCCCCGCAAATAGA
GGAACCCTGCGATGAGTTTGGTCCAGGCTACAAATGGGTGCTGAGAGCTG
GCGTCTGGGGATGTTATTGTGTGGAATATTATTGCTTGGATTTGACCGTC
TGCTTCGCATGGGGTGATCCACACTACTACCTGTTCGACGGGAGCGAACA
TCACTTCCAGGGAGCTTGCAGGTACACCCTAGCGAAGGACTATGGCACCA
GCTGTGACTTCGTCGTGGAAGCACAGAACCAACCAGTCCCCGTAACGCCA
CAATATACCTTCGTCAGTGACGTGTACGTGGAAGCGTACGGATGTACGAT
CGGAATGCATCAAGGGAGACTAGTTACAGTTGACGGCGTGCTGTATACAC
CACCCTTCAGCAAAGCCTTGGGTAAGATCCAGGTCGGCCTGGGAGGACTC
TCTGTCCACGTGTGGCTGGTGAACTACGGCGTGATCGTCGCATATGATGG
CGTCACCCATGTCACGGTGGCAGTTCCAAACGACTACCATGGCCAGATGT
GTGGTCTGTGCGGCAACTTCAACGGTAACCCGTTTGACGATTTCATGAAG
CCGGACGGGACCATTGTCGGGGATGTAAACATCTTTGGGAACTGTGGTTG
CATGAACGACTACGGGCGTTATTTCATGCTTTGGGAACGCTGGTGGGAGA
ACGGATACGACTGTGTTTGTGAAGAGGAGAACGTCATCACTTGTATTGCC
GTCACTGGACCCCCGCAAATAGAGGAACCCTGCGATGAGTTTGGTCCAGG
CTACAAATGGGTGCTGAGAGCTGGCGTCTGGGGATGTTATTGTGTGGAAT
ATTATTGCTTGGATTTGACCGTCTGCTTCGCATGGGGTGATCCACACTAC
TACCTGTTCGACGGGAGCGAACATCACTTCCAGGGAGCTTGCAGGTACAC
CCTAGCGAAGGACTATGGCACCAGCTGTGACTTCGTCGTGGAAGCACAGA
ACCAACCAGTCCCCGTAACGCCACAATATACCTTCGTCAGTGACGTGTAC
GTGGAAGCGTACGGATGTACGATCGGAATGCATCAAGGGAGACTAGTTAC
AGTTGACGGCGTGCTGTATACACCACCCTTCAGCAAAGCCTTGGGTAAGA
TCCAGGTCGGCCTGGGAGGACTCTCTGTCCACGTGTGGCTGGTGAACTAC
GGCGTGATCGTCGCATATGATGGCGTCACCCATGTCACGGTGGCAGTTCC
AAACGACTACCATGGCCAGATGTGTGGTCTGTGCGGCAACTTCAACGGTA
ACCCGTTTGACGATTTCATGAAGCCGGACGGGACCATTGTCGGGGATGTA
AACATCTTTGGGAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000005 | genome | Sc0000005:5307213..5309445 - |
Properties
| Property Name | Value |
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| Transcript id | BL96680_cuf2 |
| Biotype | protein_coding |
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