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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96679_cuf1 >transcript:BL96679_cuf1-protein ID=transcript:BL96679_cuf1-protein|Name=transcript:BL96679_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=240bp
GCECDEGFLLSGQECVMKEQCGCTDDEGRYFMLGERWGGDGETCVCEAGN
VTTCEPCIEDEGYKLVLTNGVWECLCVEDRCDECISDPCQNGATCIDEVN
GYTCICAPGYEGVHCETDVQCPRLSAPTNGERAPSTGATSYQDVVTFTCD
SGYQLNGASSVTCQADGTWTDTEPTCRRTSVQCRTLSRPANGALTPVGPY
YSPVTVSFTCDTGYVRIGTATTTCQADGSWTDPEPTCTGK Run BLAST on NCBI mRNA from alignment at Sc0000005:5303106..5304799- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96679_cuf1 ID=transcript:BL96679_cuf1|Name=transcript:BL96679_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=1694bp|location=Sequence derived from alignment at Sc0000005:5303106..5304799- (Branchiostoma lanceolatum)
GGGATGCGAATGCGACGAGGGCTTCCTGCTGAGTGGACAGGAGTGCGTGA
TGAAAGAGCAGTGTGGATGTACGGACGATGAAGGGCGTTATTTCATGGTC
AGTAGAGGTTAAACCAGCTTAATTTTTCTTGAAATTAAGCACAAAATAGT
CTTCAACTCTTAGTCAAGTTAGTCACGAGAACCTTTCTTAATGATACGTC
GATGAAAGTTAGACATTCAGGTAGTAAAATACGACAGATAACAGATACTC
AAGCAACTGGACCAAGCAACTGCAGTTGCTTGAGTTACTGTTAACTTTCG
CAGTCCAAGTAAGCTTTTGAAATTGACAAAAATTGACATAATTAGGATCA
ACACACCAAATGATGACCTCATTGCATAAATGTACATTTGACTTGCAAAA
TGTCTGGTCGGCATACACCTAGCCATCGTAATCGCGCCCGAAGGACTGTG
TATGATATGCAGCAATGATCCAACCTTCCGTAGCTCGGAGAACGCTGGGG
AGGAGACGGCGAAACCTGCGTCTGCGAAGCGGGGAATGTCACCACTTGTG
AGCCCTGCATTGAAGATGAGGGCTACAAATTGGTGCTCACGAATGGCGTC
TGGGAATGTCTTTGTGTCGAGGACCGCTGTGGTGAGCAAGGCATTTGGGG
CATTTATTCATTTATTTATGAAACTCTTCCATTTGCACAAATTGGAGAGG
GTCGTATTTATCACGGCCCTATGGCCATGCAGGTAGTACAGTTAAAGAGT
GGCACCGTGCTGCTGATAGTGATATCGTTCACTGTGGGCGCATTAGGACC
CGCTTCGCCCTATCAAAGCCTCCGCCCACTTACACTCAGTAGACGTCCAT
CTAATCTAAAGCTAAAACTTTATAGTCAATTTCTGACGATGGAAGGCATA
TCAATATGTATTATATACCCTTAAGCGTTTTGACAGAAATTCTTCGATGT
CGTTAAAACAGACGAATGCATCTCTGATCCGTGTCAAAACGGCGCAACTT
GCATCGACGAAGTCAACGGCTACACCTGTATCTGTGCTCCCGGCTATGAA
GGGGTTCACTGCGAAACAGGTACGTTTGCGAATGGATACAAAGATAAACA
AACAGGCGCATTTTTAATTATTCAGAACATGTTCTTGTTATAAAGTGTTA
CTGAACATTTCAGATGTACAATGCCCTCGGTTGTCGGCGCCAACTAACGG
AGAACGAGCACCCAGTACCGGAGCGACCTCCTACCAGGACGTGGTCACAT
TCACCTGTGACTCGGGATACCAACTGAACGGAGCCTCTAGTGTGACGTGC
CAAGCTGACGGGACGTGGACGGATACTGAACCAACATGCAGACGTACATG
TAAGATGAATTTGACCCGGTCAATATCTATAGAGTGTATTGAAGAAGAAA
ATGACATGACCCTCCTGTATTCAAAAAATGATAGACTGACAGACAAGCGT
CCTTTTTGGATCTCGAGTACTGAAATACATTCTGGTAATAAAAGGTTATT
GACCATTTCAGCCGTACAATGCCGGACGTTGAGCCGCCCAGCTAACGGAG
CGCTGACTCCTGTCGGACCATACTACTCCCCGGTCACGGTCAGCTTTACC
TGTGACACAGGATACGTTCGGATCGGCACAGCTACTACGACGTGCCAAGC
TGACGGATCATGGACGGACCCTGAACCAACATGCACAGGTAAGA Coding sequence (CDS) from alignment at Sc0000005:5303106..5304799- >transcript:BL96679_cuf1 ID=transcript:BL96679_cuf1|Name=transcript:BL96679_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3600bp|location=Sequence derived from alignment at Sc0000005:5303106..5304799- (Branchiostoma lanceolatum)
GGATGCGAATGCGACGAGGGCTTCCTGCTGAGTGGACAGGAGTGCGTGAT
GAAAGAGCAGTGTGGATGTACGGACGATGAAGGGCGTTATTTCATGCTCG
GAGAACGCTGGGGAGGAGACGGCGAAACCTGCGTCTGCGAAGCGGGGAAT
GTCACCACTTGTGAGCCCTGCATTGAAGATGAGGGCTACAAATTGGTGCT
CACGAATGGCGTCTGGGAATGTCTTTGTGTCGAGGACCGCTGTGACGAAT
GCATCTCTGATCCGTGTCAAAACGGCGCAACTTGCATCGACGAAGTCAAC
GGCTACACCTGTATCTGTGCTCCCGGCTATGAAGGGGTTCACTGCGAAAC
AGATGTACAATGCCCTCGGTTGTCGGCGCCAACTAACGGAGAACGAGCAC
CCAGTACCGGAGCGACCTCCTACCAGGACGTGGTCACATTCACCTGTGAC
TCGGGATACCAACTGAACGGAGCCTCTAGTGTGACGTGCCAAGCTGACGG
GACGTGGACGGATACTGAACCAACATGCAGACGTACATCCGTACAATGCC
GGACGTTGAGCCGCCCAGCTAACGGAGCGCTGACTCCTGTCGGACCATAC
TACTCCCCGGTCACGGTCAGCTTTACCTGTGACACAGGATACGTTCGGAT
CGGCACAGCTACTACGACGTGCCAAGCTGACGGATCATGGACGGACCCTG
AACCAACATGCACAGGTAAGGGATGCGAATGCGACGAGGGCTTCCTGCTG
AGTGGACAGGAGTGCGTGATGAAAGAGCAGTGTGGATGTACGGACGATGA
AGGGCGTTATTTCATGCTCGGAGAACGCTGGGGAGGAGACGGCGAAACCT
GCGTCTGCGAAGCGGGGAATGTCACCACTTGTGAGCCCTGCATTGAAGAT
GAGGGCTACAAATTGGTGCTCACGAATGGCGTCTGGGAATGTCTTTGTGT
CGAGGACCGCTGTGACGAATGCATCTCTGATCCGTGTCAAAACGGCGCAA
CTTGCATCGACGAAGTCAACGGCTACACCTGTATCTGTGCTCCCGGCTAT
GAAGGGGTTCACTGCGAAACAGATGTACAATGCCCTCGGTTGTCGGCGCC
AACTAACGGAGAACGAGCACCCAGTACCGGAGCGACCTCCTACCAGGACG
TGGTCACATTCACCTGTGACTCGGGATACCAACTGAACGGAGCCTCTAGT
GTGACGTGCCAAGCTGACGGGACGTGGACGGATACTGAACCAACATGCAG
ACGTACATCCGTACAATGCCGGACGTTGAGCCGCCCAGCTAACGGAGCGC
TGACTCCTGTCGGACCATACTACTCCCCGGTCACGGTCAGCTTTACCTGT
GACACAGGATACGTTCGGATCGGCACAGCTACTACGACGTGCCAAGCTGA
CGGATCATGGACGGACCCTGAACCAACATGCACAGGTAAGGGATGCGAAT
GCGACGAGGGCTTCCTGCTGAGTGGACAGGAGTGCGTGATGAAAGAGCAG
TGTGGATGTACGGACGATGAAGGGCGTTATTTCATGCTCGGAGAACGCTG
GGGAGGAGACGGCGAAACCTGCGTCTGCGAAGCGGGGAATGTCACCACTT
GTGAGCCCTGCATTGAAGATGAGGGCTACAAATTGGTGCTCACGAATGGC
GTCTGGGAATGTCTTTGTGTCGAGGACCGCTGTGACGAATGCATCTCTGA
TCCGTGTCAAAACGGCGCAACTTGCATCGACGAAGTCAACGGCTACACCT
GTATCTGTGCTCCCGGCTATGAAGGGGTTCACTGCGAAACAGATGTACAA
TGCCCTCGGTTGTCGGCGCCAACTAACGGAGAACGAGCACCCAGTACCGG
AGCGACCTCCTACCAGGACGTGGTCACATTCACCTGTGACTCGGGATACC
AACTGAACGGAGCCTCTAGTGTGACGTGCCAAGCTGACGGGACGTGGACG
GATACTGAACCAACATGCAGACGTACATCCGTACAATGCCGGACGTTGAG
CCGCCCAGCTAACGGAGCGCTGACTCCTGTCGGACCATACTACTCCCCGG
TCACGGTCAGCTTTACCTGTGACACAGGATACGTTCGGATCGGCACAGCT
ACTACGACGTGCCAAGCTGACGGATCATGGACGGACCCTGAACCAACATG
CACAGGTAAGGGATGCGAATGCGACGAGGGCTTCCTGCTGAGTGGACAGG
AGTGCGTGATGAAAGAGCAGTGTGGATGTACGGACGATGAAGGGCGTTAT
TTCATGCTCGGAGAACGCTGGGGAGGAGACGGCGAAACCTGCGTCTGCGA
AGCGGGGAATGTCACCACTTGTGAGCCCTGCATTGAAGATGAGGGCTACA
AATTGGTGCTCACGAATGGCGTCTGGGAATGTCTTTGTGTCGAGGACCGC
TGTGACGAATGCATCTCTGATCCGTGTCAAAACGGCGCAACTTGCATCGA
CGAAGTCAACGGCTACACCTGTATCTGTGCTCCCGGCTATGAAGGGGTTC
ACTGCGAAACAGATGTACAATGCCCTCGGTTGTCGGCGCCAACTAACGGA
GAACGAGCACCCAGTACCGGAGCGACCTCCTACCAGGACGTGGTCACATT
CACCTGTGACTCGGGATACCAACTGAACGGAGCCTCTAGTGTGACGTGCC
AAGCTGACGGGACGTGGACGGATACTGAACCAACATGCAGACGTACATCC
GTACAATGCCGGACGTTGAGCCGCCCAGCTAACGGAGCGCTGACTCCTGT
CGGACCATACTACTCCCCGGTCACGGTCAGCTTTACCTGTGACACAGGAT
ACGTTCGGATCGGCACAGCTACTACGACGTGCCAAGCTGACGGATCATGG
ACGGACCCTGAACCAACATGCACAGGTAAGGGATGCGAATGCGACGAGGG
CTTCCTGCTGAGTGGACAGGAGTGCGTGATGAAAGAGCAGTGTGGATGTA
CGGACGATGAAGGGCGTTATTTCATGCTCGGAGAACGCTGGGGAGGAGAC
GGCGAAACCTGCGTCTGCGAAGCGGGGAATGTCACCACTTGTGAGCCCTG
CATTGAAGATGAGGGCTACAAATTGGTGCTCACGAATGGCGTCTGGGAAT
GTCTTTGTGTCGAGGACCGCTGTGACGAATGCATCTCTGATCCGTGTCAA
AACGGCGCAACTTGCATCGACGAAGTCAACGGCTACACCTGTATCTGTGC
TCCCGGCTATGAAGGGGTTCACTGCGAAACAGATGTACAATGCCCTCGGT
TGTCGGCGCCAACTAACGGAGAACGAGCACCCAGTACCGGAGCGACCTCC
TACCAGGACGTGGTCACATTCACCTGTGACTCGGGATACCAACTGAACGG
AGCCTCTAGTGTGACGTGCCAAGCTGACGGGACGTGGACGGATACTGAAC
CAACATGCAGACGTACATCCGTACAATGCCGGACGTTGAGCCGCCCAGCT
AACGGAGCGCTGACTCCTGTCGGACCATACTACTCCCCGGTCACGGTCAG
CTTTACCTGTGACACAGGATACGTTCGGATCGGCACAGCTACTACGACGT
GCCAAGCTGACGGATCATGGACGGACCCTGAACCAACATGCACAGGTAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000005 | genome | Sc0000005:5303106..5304799 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96679_cuf1 |
| Biotype | protein_coding |
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