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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96678_cuf0 >transcript:BL96678_cuf0-protein ID=transcript:BL96678_cuf0-protein|Name=transcript:BL96678_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=161bp
AIPCPDVTAPGNGALSPPGPYAYPDTVSFTCDTGYQVNGASSVTCQADGS
WTDPEPTCTDIDECATMRCQNNRECVNTPGSYECRCRNNRREFRGRCLDV
LEYNIVTRLLQYQVYRDQLDNRPKRFARLVKAIRNNVTRLHREGKLTINQ
FRNTDIRDFIP Run BLAST on NCBI mRNA from alignment at Sc0000005:5290147..5292977- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96678_cuf0 ID=transcript:BL96678_cuf0|Name=transcript:BL96678_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2831bp|location=Sequence derived from alignment at Sc0000005:5290147..5292977- (Branchiostoma lanceolatum)
GCTATACCATGTCCGGACGTGACGGCCCCAGGTAACGGAGCGCTGAGTCC
TCCCGGACCATACGCCTACCCGGACACGGTCAGCTTTACCTGTGACACGG
GATACCAAGTGAACGGAGCCTCTAGTGTGACGTGTCAAGCTGACGGATCA
TGGACGGATCCTGAACCAACATGCACAGGTAATGAGTTAAATATGATATA
CCTGTAATTTACTTTCGTATCATTTTCATTTATTGGTATATCTTTTAGTA
TTCCATGTTGGGTTCCCTTGGAAACCAGTCACACGACGACTAAAGGGGCA
ACGCAACTCTCTCCAAGATGAATACATAAGAATACATATGTAAAATGATG
ACTTTCAAGTTAATAAGCTAGCAGTATCCATCGGATTGTAGTATGAAGAC
ATTTAGCAAATAGCAAACAGACTATCAGAAGGACACTGCGTGACCTTTCT
GTTGAAAGCTTAGGCACAGACAAACAGGCGTCGTTTTTAAATCTTCAGTA
CAGAAATATATTATTTTGATAAAAGATCACTGCACGAAATCTCCTTGGAT
CCTGACGTATCCGAACATCGTAGACGCTGATCAGGAATTAACTTAAGATC
CGACAGAATCCGAACGGACATGGGGCCGTCTCTTACTTGCACAATTCAAA
TTTGCCTGAATTAACCTGCAATGGCAAGTGGTATATTAAGCACCAATCTG
TGAATGTCCCTCGGCCTGCCTGGAATTGGCAACATAGCCACATAATGGCC
ACATAGCCGCGTTGCCTCACGAAAAAACTTACATGTATGGTACTTAATGT
GCCACGTATATATATTTCTTTCCATGAAAATTGTAGACATCGATGAGTGT
GCAACTATGAGATGCCAGAACAATCGGGAATGCGTGAACACTCCAGGCAG
CTACGAATGCCGATGCAGGAACAATCGCAGGGAGTTTAGGGGACGATGCC
TAGGTAGGTACATGTAGATGACAGAAGATGACATTCTACATCATTCACAG
TGTACCAAGTTAACATTAGCTGAACTTTTCGGATAAAATACATCTGTTTA
GGAACTATATGGGATTGTACAGGAAATGAACTGACTTTGGAACTTCATCC
AACCAATAAACTAAGAAATAGACGTCACATCCATCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTATCTCTTTCTCTCTCTCTCTCCCTCTCTCTCT
CTCTCTCTCTCTCCCTCTCCCTCTCTCTCTCCCTCTCTCTCTCTCTCTCG
CCTCACAAATTCGGAAGGCGGCGGTTCCGAAAAATATAGCTGAAAACTGA
AGGGATCGCGGGTGTTATTGTATTGTACAAGCGTGTGTGTGCATGTCTCT
CTCTGTTTCTCTCTCTCTCTGTCTCTCTCTCTTTTTCTCCCTCTCCCTCT
CTCTCTCTTTGCACACAGCAACTGCCCTAAATAAGCATTAATTGTTGAGA
ATGAACAACACCGCATGACATATGAACGGTTACTAGAGTTTCGTTTAACG
ATTGGTTTTGTATAATTGGTCTTGTTTTAGTTATTTGTATATGCTGTATC
CTCTATTCCTTTTCTATGATTTCACTATCAACATACGCTTGATTTCTGTA
TTTATCCTATGTGCCGATTTTCCCTACGTTCTCTGTGAATATTGGAAATC
AACAAAGTAATGATGGGAGAACCAAGATTGTTGAAGTGTCTACACAGAAA
ATTTCATAAATGAATGAATAACCTTCTCCCTATCGTTGGAATATTGACGC
TTTCTTTCTTTTCCAGATGTCCTGGAATACAACATAGTCACCCGTTTGCT
TCAGTACCAGGTGTATCGGGACCAGCTGGACAATAGGCCCAAGAGGTTTG
CAAGACTTGTCAAAGCCATTCGGAATAATGTAAGTGTTTAAACATTCAGT
AGACGCCATCCTATGCATGTCTATGTCTTATGGACCAGTGCATAAAACGA
AATGTGCTCTTGAAATGATTCAAAAGGTAAGGAGTATGGTATTGAGCAAC
CGGAGATCTGAATGGACATAGTAGCTAATAAAGACACAGCAGAAATGCCA
CATTTTAAACCAATCATGTGATGTGGATATTTGAGAGCAATTGAGCCACA
CCGCTTGCTTACTCATAAGTCATCGTCGAGACTAATTCACAAAATTTGAA
GACGTACTTGAAGTATCAAGATCAGATGAAGGCATGTTCCTGCCAATCGA
ACTGTGTGCATAGAGCAATAAGATGTTGGGTTCTGAATAGGATGTCCCCA
AGAGACAACAGCAATCATCTTGGGGGTTTCGAAAGATCAAAATTTGTGTG
CAGCTGTGAAATGCCAGAATAATCGGGAATGCGTGAACAGATATTTTGAA
AGATAAAAATTCCATGCCTATGACAGAACGCATCAATTTTTGCTTATTAA
TCTAAGTAACTAAATGCAAAACTGGACGTCAAATTTGCTACAAAGATATC
GACCATACGGGCGTTTCAGTATTGTGTCTAATATACCGCTTGTGCTTCTT
TTCAGGTGACACGACTTCACAGAGAGGGTAAACTGACCATAAATCAGTTC
AGAAACACGGACATCCGCGACTTTATTCCCTAGAAATCATCGCAGAGAGT
GGCGATTAGGACGAACAAAGCTTGGCAGAAAAACTAGTAGAGATTCAATA
TGCATGCTCAAACATATATCATACTAGTAGAGAGTCATATATGCATGCTC
AAACATATATCATACTAGTAGAGAGTCATATATGCATGCTCAAACATATA
TCATACTAGTAGAGAGTCATATATGCATGCTCAAACATATATCATACTAG
TAGAGAGTCACAAATGCGTGCTCAAACCTAT Coding sequence (CDS) from alignment at Sc0000005:5290147..5292977- >transcript:BL96678_cuf0 ID=transcript:BL96678_cuf0|Name=transcript:BL96678_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1944bp|location=Sequence derived from alignment at Sc0000005:5290147..5292977- (Branchiostoma lanceolatum)
GCTATACCATGTCCGGACGTGACGGCCCCAGGTAACGGAGCGCTGAGTCC
TCCCGGACCATACGCCTACCCGGACACGGTCAGCTTTACCTGTGACACGG
GATACCAAGTGAACGGAGCCTCTAGTGTGACGTGTCAAGCTGACGGATCA
TGGACGGATCCTGAACCAACATGCACAGACATCGATGAGTGTGCAACTAT
GAGATGCCAGAACAATCGGGAATGCGTGAACACTCCAGGCAGCTACGAAT
GCCGATGCAGGAACAATCGCAGGGAGTTTAGGGGACGATGCCTAGATGTC
CTGGAATACAACATAGTCACCCGTTTGCTTCAGTACCAGGTGTATCGGGA
CCAGCTGGACAATAGGCCCAAGAGGTTTGCAAGACTTGTCAAAGCCATTC
GGAATAATGTGACACGACTTCACAGAGAGGGTAAACTGACCATAAATCAG
TTCAGAAACACGGACATCCGCGACTTTATTCCCTAGGCTATACCATGTCC
GGACGTGACGGCCCCAGGTAACGGAGCGCTGAGTCCTCCCGGACCATACG
CCTACCCGGACACGGTCAGCTTTACCTGTGACACGGGATACCAAGTGAAC
GGAGCCTCTAGTGTGACGTGTCAAGCTGACGGATCATGGACGGATCCTGA
ACCAACATGCACAGACATCGATGAGTGTGCAACTATGAGATGCCAGAACA
ATCGGGAATGCGTGAACACTCCAGGCAGCTACGAATGCCGATGCAGGAAC
AATCGCAGGGAGTTTAGGGGACGATGCCTAGATGTCCTGGAATACAACAT
AGTCACCCGTTTGCTTCAGTACCAGGTGTATCGGGACCAGCTGGACAATA
GGCCCAAGAGGTTTGCAAGACTTGTCAAAGCCATTCGGAATAATGTGACA
CGACTTCACAGAGAGGGTAAACTGACCATAAATCAGTTCAGAAACACGGA
CATCCGCGACTTTATTCCCTAGGCTATACCATGTCCGGACGTGACGGCCC
CAGGTAACGGAGCGCTGAGTCCTCCCGGACCATACGCCTACCCGGACACG
GTCAGCTTTACCTGTGACACGGGATACCAAGTGAACGGAGCCTCTAGTGT
GACGTGTCAAGCTGACGGATCATGGACGGATCCTGAACCAACATGCACAG
ACATCGATGAGTGTGCAACTATGAGATGCCAGAACAATCGGGAATGCGTG
AACACTCCAGGCAGCTACGAATGCCGATGCAGGAACAATCGCAGGGAGTT
TAGGGGACGATGCCTAGATGTCCTGGAATACAACATAGTCACCCGTTTGC
TTCAGTACCAGGTGTATCGGGACCAGCTGGACAATAGGCCCAAGAGGTTT
GCAAGACTTGTCAAAGCCATTCGGAATAATGTGACACGACTTCACAGAGA
GGGTAAACTGACCATAAATCAGTTCAGAAACACGGACATCCGCGACTTTA
TTCCCTAGGCTATACCATGTCCGGACGTGACGGCCCCAGGTAACGGAGCG
CTGAGTCCTCCCGGACCATACGCCTACCCGGACACGGTCAGCTTTACCTG
TGACACGGGATACCAAGTGAACGGAGCCTCTAGTGTGACGTGTCAAGCTG
ACGGATCATGGACGGATCCTGAACCAACATGCACAGACATCGATGAGTGT
GCAACTATGAGATGCCAGAACAATCGGGAATGCGTGAACACTCCAGGCAG
CTACGAATGCCGATGCAGGAACAATCGCAGGGAGTTTAGGGGACGATGCC
TAGATGTCCTGGAATACAACATAGTCACCCGTTTGCTTCAGTACCAGGTG
TATCGGGACCAGCTGGACAATAGGCCCAAGAGGTTTGCAAGACTTGTCAA
AGCCATTCGGAATAATGTGACACGACTTCACAGAGAGGGTAAACTGACCA
TAAATCAGTTCAGAAACACGGACATCCGCGACTTTATTCCCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000005 | genome | Sc0000005:5290147..5292977 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96678_cuf0 |
| Biotype | protein_coding |
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