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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96673_cuf1 >transcript:BL96673_cuf1-protein ID=transcript:BL96673_cuf1-protein|Name=transcript:BL96673_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=335bp
ARLTIELQDENDNSPQFSHEDFHFFIPENATDSSLVGTVLATDLDSDHNG
KVDHFIVDGGDGVFRLDFSSGQLTLVRGDLLDREAVDWYTLTIRAQVSRY
TLTIRAQDRGSLPLSNFTNVNVTVTDVNDNAPSFDDDTLRHAVTKEPIRT
VENLPNGTHLLMLSVTDPDAGVSGSVRLDVNSGGFSVVMLDNSTERWAVV
SNGTLDREERETYELGITATDMGTPALSSSITIVLAVGDVNDVPPTFLEP
PDEVTLLGGSHPGTLVAIFAVEDPDLDGDIEYSLTQDHPQLFRINDAGVV
DVKRRLPHVTTTMNVNVTIEVTDGLHLTNTTLRVH Run BLAST on NCBI mRNA from alignment at Sc0000005:7164595..7166879+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96673_cuf1 ID=transcript:BL96673_cuf1|Name=transcript:BL96673_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2285bp|location=Sequence derived from alignment at Sc0000005:7164595..7166879+ (Branchiostoma lanceolatum)
GCGCGGTTAACCATTGAACTGCAGGATGAGAACGACAACTCGCCACAGTT
CAGTCACGAAGATTTCCATTTCTTCATCCCCGAAAACGCCACGGACAGCT
CGCTTGTTGGAACAGTGTTGGCGACAGATCTAGATTCTGATCACAACGGT
GAGCTATTGACTTGTGCAGACGAAGACGTTCTGCAACTTTGGTTGTAATA
GGGAAATGCTACGGCAACAAAGTGAATGTTAGCCTCCAGTGTTCTTGACA
AAAATATGTTTTACACGTGGACTATGTTCTGTACTGCACCTAACATTTAC
TATAATCCTTACCGTGTAGGTAAGGTGGACCACTTTATCGTGGACGGAGG
TGACGGCGTGTTCCGGCTGGACTTCTCGTCTGGACAGCTGACGTTAGTCC
GGGGGGATCTGCTGGACCGGGAGGCTGTGGACTGGTACACACTGACCATC
AGAGCACAGGTGAGCTGCTACACACTGACCATCAGGGCACAAGTGAGCAG
GTACACACTGACCATCAGGGCACAGGTGAGCAGGTACACACTGACCATCA
GGGCACAGGTGAGCTAGCACACACTGACCATCAGAGCACAGGTGAGCAGG
TACACACTGACCATCAGGGCACAGGTGAGTTAGTACACACTGACCATCAG
AGCACAGGTGAGCAGGTACACACTGACCATCAGGGCACAGGTGAGTTAGT
ACACACTGACCATCAGGGCACAGGTGAGCAGGTACACACTGACCATCAGG
GCACAGGTGAGCTAGCACACACTGACCATCAGGGCACACGTGAGTTGGTA
CACACTGACCACCAGGGCACATGAGCTGGTACACACTGACCACCAGGGCA
CAGGTGAGCTGCAGGTACACACTGACCATCAGGGCACAGGTGAGCAGGTA
CACACTGGCCACCAGGGCACAGGTGAGTTAGCACACACTGACCTCCAGGG
CACAAGTGAGCTAGCACACACTGACCATCAGGGCACAGGTGAGTTAGCAC
ACACTGACCATCATGATCATCAAGACACAGATATAAAGGTGTAGATATGT
TTCTAGATTTATACTTACATATAGAAATAGGACGCCGTATGTTCCTAGCA
AGTTGAGCATTTTATCGTCCCCAAAGCTAAAAGTGCAACTCATTGCATCC
ACAGGATCGGGGTTCTCTGCCCCTTTCTAATTTCACCAACGTCAACGTCA
CGGTCACTGACGTCAACGATAACGCCCCTTCCTTCGATGACGACACGCTA
CGTCACGCCGTCACCAAAGAGCCAATCAGAACCGTGGAAAACCTGCCGAA
CGGGACTCACCTGTTGATGCTGTCCGTGACGGACCCTGATGCCGGCGTGA
GCGGGTCGGTTCGCCTGGATGTAAACAGCGGAGGGTTTTCTGTAGTGATG
CTGGACAACTCCACCGAACGCTGGGCTGTTGTGAGTAATGGGACCTTAGA
CCGAGAGGAGAGGGAGACTTATGAGCTCGGCATCACTGCTACAGACATGG
GAACACCCGCCTTATCCAGCAGCATCACCATAGTGCTGGCAGTCGGTAAG
TACCTGAAGCTGCATTCTGATGGTTTGTTGTATAATTTTCAATGGAAAGT
AAGAAATTGACAAATTTCAGCAACACTGAAGTCGTCTACAAATCCACTGA
AAATAGAAATTGCTGAAAGTTAAAAACGAGTTCATCATCAACACCCATAC
AGTGTTAAATCCCATACCATTCACTGGTCATAACTGTTAGCCAACAACTG
TAATGTTAACGACCCAATTCCACCTGGTATGCACAGGTGACGTAAATGAC
GTTCCCCCGACCTTCCTTGAACCTCCTGACGAAGTCACCTTGCTGGGTGG
ATCGCATCCGGGTACTCTGGTCGCCATATTTGCTGTCGAGGACCCGGATT
TAGACGGCGATATTGAGTACAGCCTTACTCAGGATCATCCTCAGCTGTTC
CGCATCAACGATGCCGGCGTTGTCGACGTTAAAAGACGGTGAATCTTCCC
TTAATACAATAAAACTAACACGACTGTTCGAATCAGTAATACCCGTTATT
AGAGTCACGTGGTTATGATATTACGTATCAAAAGTGGCCGGGCAAGTCAT
CCAAGAAATGGCCATAGCCAAAAGTTTGATTTGATGTTACACGTGTCGAA
AGTTTAAATTTTAATGTAAAAACGATTTTTTTCTATGCTGCAGCCTTCCC
CACGTCACGACCACCATGAACGTGAATGTAACCATCGAGGTGACAGACGG
GCTTCACCTCACCAACACAACTCTCCGGGTACACG Coding sequence (CDS) from alignment at Sc0000005:7164595..7166879+ >transcript:BL96673_cuf1 ID=transcript:BL96673_cuf1|Name=transcript:BL96673_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=6030bp|location=Sequence derived from alignment at Sc0000005:7164595..7166879+ (Branchiostoma lanceolatum)
GCGCGGTTAACCATTGAACTGCAGGATGAGAACGACAACTCGCCACAGTT
CAGTCACGAAGATTTCCATTTCTTCATCCCCGAAAACGCCACGGACAGCT
CGCTTGTTGGAACAGTGTTGGCGACAGATCTAGATTCTGATCACAACGGT
AAGGTGGACCACTTTATCGTGGACGGAGGTGACGGCGTGTTCCGGCTGGA
CTTCTCGTCTGGACAGCTGACGTTAGTCCGGGGGGATCTGCTGGACCGGG
AGGCTGTGGACTGGTACACACTGACCATCAGGGCACAGGTGAGCAGGTAC
ACACTGACCATCAGGGCACAGGATCGGGGTTCTCTGCCCCTTTCTAATTT
CACCAACGTCAACGTCACGGTCACTGACGTCAACGATAACGCCCCTTCCT
TCGATGACGACACGCTACGTCACGCCGTCACCAAAGAGCCAATCAGAACC
GTGGAAAACCTGCCGAACGGGACTCACCTGTTGATGCTGTCCGTGACGGA
CCCTGATGCCGGCGTGAGCGGGTCGGTTCGCCTGGATGTAAACAGCGGAG
GGTTTTCTGTAGTGATGCTGGACAACTCCACCGAACGCTGGGCTGTTGTG
AGTAATGGGACCTTAGACCGAGAGGAGAGGGAGACTTATGAGCTCGGCAT
CACTGCTACAGACATGGGAACACCCGCCTTATCCAGCAGCATCACCATAG
TGCTGGCAGTCGGTGACGTAAATGACGTTCCCCCGACCTTCCTTGAACCT
CCTGACGAAGTCACCTTGCTGGGTGGATCGCATCCGGGTACTCTGGTCGC
CATATTTGCTGTCGAGGACCCGGATTTAGACGGCGATATTGAGTACAGCC
TTACTCAGGATCATCCTCAGCTGTTCCGCATCAACGATGCCGGCGTTGTC
GACGTTAAAAGACGCCTTCCCCACGTCACGACCACCATGAACGTGAATGT
AACCATCGAGGTGACAGACGGGCTTCACCTCACCAACACAACTCTCCGGG
TACACGCGCGGTTAACCATTGAACTGCAGGATGAGAACGACAACTCGCCA
CAGTTCAGTCACGAAGATTTCCATTTCTTCATCCCCGAAAACGCCACGGA
CAGCTCGCTTGTTGGAACAGTGTTGGCGACAGATCTAGATTCTGATCACA
ACGGTAAGGTGGACCACTTTATCGTGGACGGAGGTGACGGCGTGTTCCGG
CTGGACTTCTCGTCTGGACAGCTGACGTTAGTCCGGGGGGATCTGCTGGA
CCGGGAGGCTGTGGACTGGTACACACTGACCATCAGGGCACAGGTGAGCA
GGTACACACTGACCATCAGGGCACAGGATCGGGGTTCTCTGCCCCTTTCT
AATTTCACCAACGTCAACGTCACGGTCACTGACGTCAACGATAACGCCCC
TTCCTTCGATGACGACACGCTACGTCACGCCGTCACCAAAGAGCCAATCA
GAACCGTGGAAAACCTGCCGAACGGGACTCACCTGTTGATGCTGTCCGTG
ACGGACCCTGATGCCGGCGTGAGCGGGTCGGTTCGCCTGGATGTAAACAG
CGGAGGGTTTTCTGTAGTGATGCTGGACAACTCCACCGAACGCTGGGCTG
TTGTGAGTAATGGGACCTTAGACCGAGAGGAGAGGGAGACTTATGAGCTC
GGCATCACTGCTACAGACATGGGAACACCCGCCTTATCCAGCAGCATCAC
CATAGTGCTGGCAGTCGGTGACGTAAATGACGTTCCCCCGACCTTCCTTG
AACCTCCTGACGAAGTCACCTTGCTGGGTGGATCGCATCCGGGTACTCTG
GTCGCCATATTTGCTGTCGAGGACCCGGATTTAGACGGCGATATTGAGTA
CAGCCTTACTCAGGATCATCCTCAGCTGTTCCGCATCAACGATGCCGGCG
TTGTCGACGTTAAAAGACGCCTTCCCCACGTCACGACCACCATGAACGTG
AATGTAACCATCGAGGTGACAGACGGGCTTCACCTCACCAACACAACTCT
CCGGGTACACGCGCGGTTAACCATTGAACTGCAGGATGAGAACGACAACT
CGCCACAGTTCAGTCACGAAGATTTCCATTTCTTCATCCCCGAAAACGCC
ACGGACAGCTCGCTTGTTGGAACAGTGTTGGCGACAGATCTAGATTCTGA
TCACAACGGTAAGGTGGACCACTTTATCGTGGACGGAGGTGACGGCGTGT
TCCGGCTGGACTTCTCGTCTGGACAGCTGACGTTAGTCCGGGGGGATCTG
CTGGACCGGGAGGCTGTGGACTGGTACACACTGACCATCAGGGCACAGGT
GAGCAGGTACACACTGACCATCAGGGCACAGGATCGGGGTTCTCTGCCCC
TTTCTAATTTCACCAACGTCAACGTCACGGTCACTGACGTCAACGATAAC
GCCCCTTCCTTCGATGACGACACGCTACGTCACGCCGTCACCAAAGAGCC
AATCAGAACCGTGGAAAACCTGCCGAACGGGACTCACCTGTTGATGCTGT
CCGTGACGGACCCTGATGCCGGCGTGAGCGGGTCGGTTCGCCTGGATGTA
AACAGCGGAGGGTTTTCTGTAGTGATGCTGGACAACTCCACCGAACGCTG
GGCTGTTGTGAGTAATGGGACCTTAGACCGAGAGGAGAGGGAGACTTATG
AGCTCGGCATCACTGCTACAGACATGGGAACACCCGCCTTATCCAGCAGC
ATCACCATAGTGCTGGCAGTCGGTGACGTAAATGACGTTCCCCCGACCTT
CCTTGAACCTCCTGACGAAGTCACCTTGCTGGGTGGATCGCATCCGGGTA
CTCTGGTCGCCATATTTGCTGTCGAGGACCCGGATTTAGACGGCGATATT
GAGTACAGCCTTACTCAGGATCATCCTCAGCTGTTCCGCATCAACGATGC
CGGCGTTGTCGACGTTAAAAGACGCCTTCCCCACGTCACGACCACCATGA
ACGTGAATGTAACCATCGAGGTGACAGACGGGCTTCACCTCACCAACACA
ACTCTCCGGGTACACGCGCGGTTAACCATTGAACTGCAGGATGAGAACGA
CAACTCGCCACAGTTCAGTCACGAAGATTTCCATTTCTTCATCCCCGAAA
ACGCCACGGACAGCTCGCTTGTTGGAACAGTGTTGGCGACAGATCTAGAT
TCTGATCACAACGGTAAGGTGGACCACTTTATCGTGGACGGAGGTGACGG
CGTGTTCCGGCTGGACTTCTCGTCTGGACAGCTGACGTTAGTCCGGGGGG
ATCTGCTGGACCGGGAGGCTGTGGACTGGTACACACTGACCATCAGGGCA
CAGGTGAGCAGGTACACACTGACCATCAGGGCACAGGATCGGGGTTCTCT
GCCCCTTTCTAATTTCACCAACGTCAACGTCACGGTCACTGACGTCAACG
ATAACGCCCCTTCCTTCGATGACGACACGCTACGTCACGCCGTCACCAAA
GAGCCAATCAGAACCGTGGAAAACCTGCCGAACGGGACTCACCTGTTGAT
GCTGTCCGTGACGGACCCTGATGCCGGCGTGAGCGGGTCGGTTCGCCTGG
ATGTAAACAGCGGAGGGTTTTCTGTAGTGATGCTGGACAACTCCACCGAA
CGCTGGGCTGTTGTGAGTAATGGGACCTTAGACCGAGAGGAGAGGGAGAC
TTATGAGCTCGGCATCACTGCTACAGACATGGGAACACCCGCCTTATCCA
GCAGCATCACCATAGTGCTGGCAGTCGGTGACGTAAATGACGTTCCCCCG
ACCTTCCTTGAACCTCCTGACGAAGTCACCTTGCTGGGTGGATCGCATCC
GGGTACTCTGGTCGCCATATTTGCTGTCGAGGACCCGGATTTAGACGGCG
ATATTGAGTACAGCCTTACTCAGGATCATCCTCAGCTGTTCCGCATCAAC
GATGCCGGCGTTGTCGACGTTAAAAGACGCCTTCCCCACGTCACGACCAC
CATGAACGTGAATGTAACCATCGAGGTGACAGACGGGCTTCACCTCACCA
ACACAACTCTCCGGGTACACGCGCGGTTAACCATTGAACTGCAGGATGAG
AACGACAACTCGCCACAGTTCAGTCACGAAGATTTCCATTTCTTCATCCC
CGAAAACGCCACGGACAGCTCGCTTGTTGGAACAGTGTTGGCGACAGATC
TAGATTCTGATCACAACGGTAAGGTGGACCACTTTATCGTGGACGGAGGT
GACGGCGTGTTCCGGCTGGACTTCTCGTCTGGACAGCTGACGTTAGTCCG
GGGGGATCTGCTGGACCGGGAGGCTGTGGACTGGTACACACTGACCATCA
GGGCACAGGTGAGCAGGTACACACTGACCATCAGGGCACAGGATCGGGGT
TCTCTGCCCCTTTCTAATTTCACCAACGTCAACGTCACGGTCACTGACGT
CAACGATAACGCCCCTTCCTTCGATGACGACACGCTACGTCACGCCGTCA
CCAAAGAGCCAATCAGAACCGTGGAAAACCTGCCGAACGGGACTCACCTG
TTGATGCTGTCCGTGACGGACCCTGATGCCGGCGTGAGCGGGTCGGTTCG
CCTGGATGTAAACAGCGGAGGGTTTTCTGTAGTGATGCTGGACAACTCCA
CCGAACGCTGGGCTGTTGTGAGTAATGGGACCTTAGACCGAGAGGAGAGG
GAGACTTATGAGCTCGGCATCACTGCTACAGACATGGGAACACCCGCCTT
ATCCAGCAGCATCACCATAGTGCTGGCAGTCGGTGACGTAAATGACGTTC
CCCCGACCTTCCTTGAACCTCCTGACGAAGTCACCTTGCTGGGTGGATCG
CATCCGGGTACTCTGGTCGCCATATTTGCTGTCGAGGACCCGGATTTAGA
CGGCGATATTGAGTACAGCCTTACTCAGGATCATCCTCAGCTGTTCCGCA
TCAACGATGCCGGCGTTGTCGACGTTAAAAGACGCCTTCCCCACGTCACG
ACCACCATGAACGTGAATGTAACCATCGAGGTGACAGACGGGCTTCACCT
CACCAACACAACTCTCCGGGTACACGCGCGGTTAACCATTGAACTGCAGG
ATGAGAACGACAACTCGCCACAGTTCAGTCACGAAGATTTCCATTTCTTC
ATCCCCGAAAACGCCACGGACAGCTCGCTTGTTGGAACAGTGTTGGCGAC
AGATCTAGATTCTGATCACAACGGTAAGGTGGACCACTTTATCGTGGACG
GAGGTGACGGCGTGTTCCGGCTGGACTTCTCGTCTGGACAGCTGACGTTA
GTCCGGGGGGATCTGCTGGACCGGGAGGCTGTGGACTGGTACACACTGAC
CATCAGGGCACAGGTGAGCAGGTACACACTGACCATCAGGGCACAGGATC
GGGGTTCTCTGCCCCTTTCTAATTTCACCAACGTCAACGTCACGGTCACT
GACGTCAACGATAACGCCCCTTCCTTCGATGACGACACGCTACGTCACGC
CGTCACCAAAGAGCCAATCAGAACCGTGGAAAACCTGCCGAACGGGACTC
ACCTGTTGATGCTGTCCGTGACGGACCCTGATGCCGGCGTGAGCGGGTCG
GTTCGCCTGGATGTAAACAGCGGAGGGTTTTCTGTAGTGATGCTGGACAA
CTCCACCGAACGCTGGGCTGTTGTGAGTAATGGGACCTTAGACCGAGAGG
AGAGGGAGACTTATGAGCTCGGCATCACTGCTACAGACATGGGAACACCC
GCCTTATCCAGCAGCATCACCATAGTGCTGGCAGTCGGTGACGTAAATGA
CGTTCCCCCGACCTTCCTTGAACCTCCTGACGAAGTCACCTTGCTGGGTG
GATCGCATCCGGGTACTCTGGTCGCCATATTTGCTGTCGAGGACCCGGAT
TTAGACGGCGATATTGAGTACAGCCTTACTCAGGATCATCCTCAGCTGTT
CCGCATCAACGATGCCGGCGTTGTCGACGTTAAAAGACGCCTTCCCCACG
TCACGACCACCATGAACGTGAATGTAACCATCGAGGTGACAGACGGGCTT
CACCTCACCAACACAACTCTCCGGGTACAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000005 | genome | Sc0000005:7164595..7166879 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96673_cuf1 |
| Biotype | protein_coding |
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