|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96664_cuf1 >transcript:BL96664_cuf1-protein ID=transcript:BL96664_cuf1-protein|Name=transcript:BL96664_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=398bp
GTLAMPRGPITNKFLIYLKNAVDNNAVFRFGLTDRRQEGGWMWDDNVALG
SFRAWGPGEPNNAGNEDCAEYSAGSHSSLSHKNSWNDGPCTSADRKFICQ
VRSSARGLLKSRPNPADANKKEFLPAAMTEDFECDESTGPETCSQAGDFR
VNEQPGLTSMHTVFLREHNRIARRLSRLNPRWDDDRVFFETRKIVGALMQ
KITYGEDLPRVLGPAAMTTYHLRLVSNGFYNGYSASVDPTISNVFATAAY
RFGHSLVQGLFRRHDPDFNPGSTCPFELAFSFFNPSHIFNNDQGGPDSIL
RGLTAQPHQDFDRFMVSGLTKHLFADPPGSPGLDLAALNIQRGRDHGLPG
YNAWRVKCGLRRAARFDDLAREIPDVATRQKLKRLYSHVSDIDVFVGG Run BLAST on NCBI mRNA from alignment at Sc0000005:7088063..7090255+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96664_cuf1 ID=transcript:BL96664_cuf1|Name=transcript:BL96664_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2193bp|location=Sequence derived from alignment at Sc0000005:7088063..7090255+ (Branchiostoma lanceolatum)
GGGGAACCCTCGCCATGCCTCGTGGCCCCATCACCAACAAGTTCCTCATC
TACCTGAAGAACGCTGTCGACAACAACGCGGTGTTCCGTTTTGGTCTGAC
TGATCGCCGCCAGGAGGGAGGTTGGATGTGGGACGATAACGTTGCTCTGG
GCAGCTTCAGGGCATGGGGCCCAGGAGAACCCAACAACGCGGGTAACGAG
GACTGTGCCGAGTACTCCGCGGGGAGTCATTCGTCCCTTAGCCATAAGAA
CAGCTGGAACGATGGACCATGTACCAGTGCCGACAGGAAGTTCATCTGTC
AAGTCAGGTCATCAGGTCAGGTTCAAATATTGACGTTTGTGATCCATTTT
GGAATCTTGAAGAATCATTACCGTGTCAAAACATTGTATTCAATAACGTA
CCTTGAAATAGCGAAAATACGTCTACGTATACGATATATTCCCGGGACAA
ACATATCTTAACGTTACTTTTTCATTACGAAATTTTGACAAGGAAATATG
ATACGATACATTTGCTTCGCAGTCGATGTGTCGCGAAGCAAAAGTTGGTG
TGTAGCGCAGCAAACGTTGGTGTGTCGCGTAGGAAAAGTTAGTGTGTCGC
ATAGGAAAAGTTAGTGTGTCGCGCATTGTACCTGTCGGCCACGGTAGAAT
GTGTCGAAAGCGTGCGCCAGCTGAGGCGCTGTCGAATATACGAATACCGA
ATTCGGACGTTGGTATTGCTGTTGTTACAATTTTTGGTTCGAAGACACAC
GCTTTTCGAAACTTCTGGCGCATTTCGCATGTATTGAAATGTGTGTTTTC
TCGGGTGGTTATGACATGGATAAGATACAACACGCTCATTTCTGACGTTG
AGTGGTAGCACATCTGACGTCATGAATCCACGTGTCTGATGTTACTGGGT
CAGTCAGTAAATGGTGTGAATGTAGATCACTTACTTATGTCGGTAACAAA
ACTTAACAACGTTATCCACCGACACAGACATTTTTCACTCTAAAGCACAC
CTGTTATGTTACTTGCAGCGCGCGGTCTGCTGAAGTCTAGACCGAACCCT
GCAGACGCTAACAAGAAGGAGTTCCTGCCTGCCGCAATGACAGAGGACTT
TGAGTGTGATGAATCTACCGGGCCCGAGACATGCTCGCAGGCTGGGGACT
TCCGTGTGAATGAGCAGCCGGGGCTGACCTCCATGCACACCGTCTTCCTG
CGGGAACACAACCGGATCGCCAGGCGGCTCTCCCGACTCAATCCGCGCTG
GGACGACGATCGCGTGTTCTTCGAGACCAGGAAGATTGTTGGCGCGCTGA
TGCAGAAGATCACGTACGGGGAAGACCTTCCTCGCGTTCTTGGACCCGCC
GCCATGACAACTTATCACTTACGGCTCGTTTCCAATGGCTTTTATAACGG
GTATAGCGCGAGCGTGGACCCCACCATCTCCAACGTTTTCGCCACGGCAG
CCTACCGGTTCGGACACAGCCTTGTTCAGGGCCTTTTCCGTCGCCATGAT
CCTGACTTTAACCCGGGCAGCACATGCCCATTTGAACTGGCATTTAGTTT
CTTCAACCCATCCCACATCTTCAACAACGACCAAGGCGGCCCGGACTCCA
TCCTGCGCGGACTGACCGCCCAGCCCCATCAGGACTTTGACCGGTTCATG
GTCTCGGGCCTGACGAAACACCTGTTTGCGGATCCGCCGGGATCACCAGG
CCTGGACCTGGCGGCCCTGAACATCCAGCGGGGGAGAGACCACGGACTGC
CCGGCTACAACGCCTGGAGGGTGAAGTGCGGGCTGCGCAGAGCGGCGAGG
TTTGACGATCTGGCGAGGGAGATCCCTGACGTCGCCACACGGCAGAAACT
GAAGCGCTTGTACAGGTACAGACTAAGATATTTGACTTGGCAAAAAGCGT
TACTATATTTTGCTACGTGTTGTTAGTGGTTGGGTAATCAGTTACTTCCT
CCAGTATTGGCCTAAGTTGCGGCGTGCTTGTCCTTACCTGAGAGGCATTA
TCGCACGATTGATCCCTCAATGATCTTCGTTTATTTCGTGGGGTAACGGA
AGATTGATGTTTGCTCACCAGAGCGCTGGTGTTTGGCATTTAGTAACGCT
TTCAGGAGAGAAGAGACGTAAGTGACGTAAATGCGTTACATTCTTTTATT
GCTTGCAGCCACGTGAGCGACATCGACGTGTTCGTGGGGGGTC Coding sequence (CDS) from alignment at Sc0000005:7088063..7090255+ >transcript:BL96664_cuf1 ID=transcript:BL96664_cuf1|Name=transcript:BL96664_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3582bp|location=Sequence derived from alignment at Sc0000005:7088063..7090255+ (Branchiostoma lanceolatum)
GGAACCCTCGCCATGCCTCGTGGCCCCATCACCAACAAGTTCCTCATCTA
CCTGAAGAACGCTGTCGACAACAACGCGGTGTTCCGTTTTGGTCTGACTG
ATCGCCGCCAGGAGGGAGGTTGGATGTGGGACGATAACGTTGCTCTGGGC
AGCTTCAGGGCATGGGGCCCAGGAGAACCCAACAACGCGGGTAACGAGGA
CTGTGCCGAGTACTCCGCGGGGAGTCATTCGTCCCTTAGCCATAAGAACA
GCTGGAACGATGGACCATGTACCAGTGCCGACAGGAAGTTCATCTGTCAA
GTCAGGTCATCAGCGCGCGGTCTGCTGAAGTCTAGACCGAACCCTGCAGA
CGCTAACAAGAAGGAGTTCCTGCCTGCCGCAATGACAGAGGACTTTGAGT
GTGATGAATCTACCGGGCCCGAGACATGCTCGCAGGCTGGGGACTTCCGT
GTGAATGAGCAGCCGGGGCTGACCTCCATGCACACCGTCTTCCTGCGGGA
ACACAACCGGATCGCCAGGCGGCTCTCCCGACTCAATCCGCGCTGGGACG
ACGATCGCGTGTTCTTCGAGACCAGGAAGATTGTTGGCGCGCTGATGCAG
AAGATCACGTACGGGGAAGACCTTCCTCGCGTTCTTGGACCCGCCGCCAT
GACAACTTATCACTTACGGCTCGTTTCCAATGGCTTTTATAACGGGTATA
GCGCGAGCGTGGACCCCACCATCTCCAACGTTTTCGCCACGGCAGCCTAC
CGGTTCGGACACAGCCTTGTTCAGGGCCTTTTCCGTCGCCATGATCCTGA
CTTTAACCCGGGCAGCACATGCCCATTTGAACTGGCATTTAGTTTCTTCA
ACCCATCCCACATCTTCAACAACGACCAAGGCGGCCCGGACTCCATCCTG
CGCGGACTGACCGCCCAGCCCCATCAGGACTTTGACCGGTTCATGGTCTC
GGGCCTGACGAAACACCTGTTTGCGGATCCGCCGGGATCACCAGGCCTGG
ACCTGGCGGCCCTGAACATCCAGCGGGGGAGAGACCACGGACTGCCCGGC
TACAACGCCTGGAGGGTGAAGTGCGGGCTGCGCAGAGCGGCGAGGTTTGA
CGATCTGGCGAGGGAGATCCCTGACGTCGCCACACGGCAGAAACTGAAGC
GCTTGTACAGCCACGTGAGCGACATCGACGTGTTCGTGGGGGGTGGAACC
CTCGCCATGCCTCGTGGCCCCATCACCAACAAGTTCCTCATCTACCTGAA
GAACGCTGTCGACAACAACGCGGTGTTCCGTTTTGGTCTGACTGATCGCC
GCCAGGAGGGAGGTTGGATGTGGGACGATAACGTTGCTCTGGGCAGCTTC
AGGGCATGGGGCCCAGGAGAACCCAACAACGCGGGTAACGAGGACTGTGC
CGAGTACTCCGCGGGGAGTCATTCGTCCCTTAGCCATAAGAACAGCTGGA
ACGATGGACCATGTACCAGTGCCGACAGGAAGTTCATCTGTCAAGTCAGG
TCATCAGCGCGCGGTCTGCTGAAGTCTAGACCGAACCCTGCAGACGCTAA
CAAGAAGGAGTTCCTGCCTGCCGCAATGACAGAGGACTTTGAGTGTGATG
AATCTACCGGGCCCGAGACATGCTCGCAGGCTGGGGACTTCCGTGTGAAT
GAGCAGCCGGGGCTGACCTCCATGCACACCGTCTTCCTGCGGGAACACAA
CCGGATCGCCAGGCGGCTCTCCCGACTCAATCCGCGCTGGGACGACGATC
GCGTGTTCTTCGAGACCAGGAAGATTGTTGGCGCGCTGATGCAGAAGATC
ACGTACGGGGAAGACCTTCCTCGCGTTCTTGGACCCGCCGCCATGACAAC
TTATCACTTACGGCTCGTTTCCAATGGCTTTTATAACGGGTATAGCGCGA
GCGTGGACCCCACCATCTCCAACGTTTTCGCCACGGCAGCCTACCGGTTC
GGACACAGCCTTGTTCAGGGCCTTTTCCGTCGCCATGATCCTGACTTTAA
CCCGGGCAGCACATGCCCATTTGAACTGGCATTTAGTTTCTTCAACCCAT
CCCACATCTTCAACAACGACCAAGGCGGCCCGGACTCCATCCTGCGCGGA
CTGACCGCCCAGCCCCATCAGGACTTTGACCGGTTCATGGTCTCGGGCCT
GACGAAACACCTGTTTGCGGATCCGCCGGGATCACCAGGCCTGGACCTGG
CGGCCCTGAACATCCAGCGGGGGAGAGACCACGGACTGCCCGGCTACAAC
GCCTGGAGGGTGAAGTGCGGGCTGCGCAGAGCGGCGAGGTTTGACGATCT
GGCGAGGGAGATCCCTGACGTCGCCACACGGCAGAAACTGAAGCGCTTGT
ACAGCCACGTGAGCGACATCGACGTGTTCGTGGGGGGTGGAACCCTCGCC
ATGCCTCGTGGCCCCATCACCAACAAGTTCCTCATCTACCTGAAGAACGC
TGTCGACAACAACGCGGTGTTCCGTTTTGGTCTGACTGATCGCCGCCAGG
AGGGAGGTTGGATGTGGGACGATAACGTTGCTCTGGGCAGCTTCAGGGCA
TGGGGCCCAGGAGAACCCAACAACGCGGGTAACGAGGACTGTGCCGAGTA
CTCCGCGGGGAGTCATTCGTCCCTTAGCCATAAGAACAGCTGGAACGATG
GACCATGTACCAGTGCCGACAGGAAGTTCATCTGTCAAGTCAGGTCATCA
GCGCGCGGTCTGCTGAAGTCTAGACCGAACCCTGCAGACGCTAACAAGAA
GGAGTTCCTGCCTGCCGCAATGACAGAGGACTTTGAGTGTGATGAATCTA
CCGGGCCCGAGACATGCTCGCAGGCTGGGGACTTCCGTGTGAATGAGCAG
CCGGGGCTGACCTCCATGCACACCGTCTTCCTGCGGGAACACAACCGGAT
CGCCAGGCGGCTCTCCCGACTCAATCCGCGCTGGGACGACGATCGCGTGT
TCTTCGAGACCAGGAAGATTGTTGGCGCGCTGATGCAGAAGATCACGTAC
GGGGAAGACCTTCCTCGCGTTCTTGGACCCGCCGCCATGACAACTTATCA
CTTACGGCTCGTTTCCAATGGCTTTTATAACGGGTATAGCGCGAGCGTGG
ACCCCACCATCTCCAACGTTTTCGCCACGGCAGCCTACCGGTTCGGACAC
AGCCTTGTTCAGGGCCTTTTCCGTCGCCATGATCCTGACTTTAACCCGGG
CAGCACATGCCCATTTGAACTGGCATTTAGTTTCTTCAACCCATCCCACA
TCTTCAACAACGACCAAGGCGGCCCGGACTCCATCCTGCGCGGACTGACC
GCCCAGCCCCATCAGGACTTTGACCGGTTCATGGTCTCGGGCCTGACGAA
ACACCTGTTTGCGGATCCGCCGGGATCACCAGGCCTGGACCTGGCGGCCC
TGAACATCCAGCGGGGGAGAGACCACGGACTGCCCGGCTACAACGCCTGG
AGGGTGAAGTGCGGGCTGCGCAGAGCGGCGAGGTTTGACGATCTGGCGAG
GGAGATCCCTGACGTCGCCACACGGCAGAAACTGAAGCGCTTGTACAGCC
ACGTGAGCGACATCGACGTGTTCGTGGGGGGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000005 | genome | Sc0000005:7088063..7090255 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96664_cuf1 |
| Biotype | protein_coding |
|
