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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96663_cuf0 >transcript:BL96663_cuf0-protein ID=transcript:BL96663_cuf0-protein|Name=transcript:BL96663_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=293bp
STEQCLKRLLPSQYDDGFMTPRTTGQNRTPLPKARQVSLVMHEDLRKSSP
VSTHMVMQFGQFLDHDITLTPNFQEEGLDCTCDSLDEHCFNIPVPSDDPD
FGGRRCLGFARSRSCPNEGCRMGRRQQLNQITAFVDASNVYGSSEEEMTA
LRDRSGSVACPSGYQMYNGICYKAFNARKNFLDASSTCAADGGTLAMPKG
ALANAFLVNLKNAVDRSGSFWIGLVDQHQEGGWEWIDGRPLASYNAWGPG
EPNNSGNEDCAEFFPDSHPSRKNTWNDGQCFRADRKFICQKIP Run BLAST on NCBI mRNA from alignment at Sc0000005:7085118..7087811+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96663_cuf0 ID=transcript:BL96663_cuf0|Name=transcript:BL96663_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2694bp|location=Sequence derived from alignment at Sc0000005:7085118..7087811+ (Branchiostoma lanceolatum)
AGCACTGAACAGTGCTTGAAAAGGCTGCTCCCATCACAGTACGACGATGG
TATGTGTCAGATTATTGCAGTAGCTTGTTTTGATTTTTGTATCTTCTTTA
AAATCTTCAACGGTGGTAGCGTGTGTAGTCCAGTGCTTAGTAACACTGCC
TCTGGACCAAGAGGTCGTAAATTCGAATCTGCAAGCTACTGGAAAGGAGT
ACAGTCCTTATGATGGGAGGTTAAACCGTGGTCCACTGTGAATTGTACGT
TATCTGAAAGAGCAAGGAGAACTTACGCGGTACAATAACCCTGTAAATAT
CGTACATAGCAACTGTATTCTCTGTAAAGACTATTTGAACAGTAGCAAAG
CTGGATCAAGGCCACTTTTTTTATTGAATGTCGCAATGATTTGTAATGTT
TAATGATTTAACCACAGGTTTCATGACCCCGCGCACGACCGGCCAGAATC
GCACCCCCCTCCCCAAAGCCCGACAGGTCAGCCTGGTGATGCACGAGGAC
CTTCGGAAATCCAGCCCGGTCAGCACACACATGGTCATGCAGTTCGGACA
GTTCCTGGATCACGACATCACCCTCACGCCCAACTTCCAGGAGGAAGGTT
AATAAGATTCATCAACTTTGCTCTAAATATAAATCTTTGCAAAGAAGCTT
CGCGCGACTCTGCAGCTAGCCCTCTGCGAGGTAATTGACCCTCTGCTTCG
CACACGTGACGTTAAGCCCCTCTCTCACTGGACCTGCGGCACGTTGGCGG
CCTCGCTGCAACCGAGCGATTTCACAGAGCGTTCAACGAATTGATAAAAA
AATCTGATCTTTTAACGCTTTGGGTGTTTTTGTCTTCCTAGTCATACTTG
TACGTTTTGCATGATTTTCTCATGATAAAGTCGAAGATAATCCAGTTTAG
GACGCATGATGTAGAAGGCCTCATTAACGTCCCCAACAAGTAATCCAAAC
TTGAGTCTTGTGACTGAAATGATAGACCAATCCCAATGCAAATAAAACAT
TATGACCGAGGTGCATGCAGCAATCATATATACTTATATGTTTTCGATGG
GCAACCACTGGAAAATTTGGCACCAGAGCACACACGTTTCCAAATTTGAC
TTACAATAGCCATATTGCCTTATGTTCTACACGTCCAAAGGTCTTGACTG
TACCTGTGACTCCTTGGACGAACATTGTTTCAACATCCCCGTACCTTCTG
ATGACCCTGACTTCGGTGGAAGGCGCTGCTTGGGGTTCGCCCGCTCCCGA
TCCTGCCCGAACGAAGGGTGCCGCATGGGCCGCCGGCAGCAGCTGAACCA
GATCACCGCCTTCGTGGACGCCTCCAACGTCTACGGCTCCTCGGAGGAAG
AGATGACGGCGCTCAGAGATAGGAGCGGATCTGTTGGTAGGTGGCGCCTT
TTGATAACAGTGTAGCCTGGATACCAGACCTTTCGCGCGATGCGATGATA
ACCCTTTTGGGCGGGGAAGACCTGGTACAGTAGGGATAGAGTTGGCACCC
GGGAGCGCTTGGCAGCCGAACTCTGATTTCTATCGCGCTGTGTGAGAGAT
AATTAGTGGGCCGTGTGCTATCTGTGGCGGCGGCGCGAGTTGCTTCCCCG
GCCGAAGGATTAGCCCCAGGAGCGCGGTGGTCTGGCACCCAGGCTGATAA
CAGTGCTGATTAGTTCAAGGCAACCCTCCCTTCTGACTGTTTACCCTGCC
AGGTGCCACCTTTGACCGATTTCTGATGTCATATTTCCATCAGGCCATCA
TCACAAGGTGCATGAACATACAATTATGTGAATTTGCTGCAAAATGCCAA
TTAAGAAAATGTGATATAATGTGAATCTGAATAGAAATATGTGAAACCTT
AAATGTTTCTTATGTGAATCATGAAAATATATGTGTAACAATGTGACCCT
TCAAATTTGAATCAACTATATGAAATAACACAATCCTAAAACGTGAACCA
AAAAAAACACCCAACACACTTACCGAGAAGAGTAGGAGTGACCCGGTGAG
CCGAAGCGAAGCAGCATTGCGCCATCACTAGCTACTTGAAAAGGCATGTT
TCACTTTTTACTGAATTACAACTTCCTCCGGATGTAACTTCAGAAAACAA
CTCAGAATCATCAACTTGACATCAGGATACCATAAATAAAAAACATATCT
ATCAAAGCGTTCATTCGACTGTGACCCTTTCAACCGCGCTGTCAATCTCT
CTATGTAGAAGTTTTTTTTTTTTTCAAATCCTACGGTATTCCTACCGTTA
AAACCTATATTTGTCATAGAATCATTGTTTTCCCCTCAGCTTGCCCCAGT
GGCTACCAGATGTATAACGGCATCTGCTACAAGGCATTCAACGCCCGAAA
GAACTTTCTCGACGCGTCTTCGACATGTGCAGCTGACGGGGGGACCCTTG
CTATGCCAAAGGGCGCCCTTGCTAACGCTTTCCTGGTCAACCTAAAAAAC
GCCGTGGATCGGTCCGGCTCGTTCTGGATCGGCTTGGTGGACCAGCACCA
GGAGGGGGGCTGGGAGTGGATAGACGGCAGACCTCTTGCGAGCTACAACG
CATGGGGCCCGGGAGAACCGAACAACTCTGGCAATGAGGACTGTGCCGAG
TTCTTCCCTGACAGTCATCCGTCCAGAAAGAACACCTGGAACGATGGACA
ATGTTTTAGGGCTGACAGAAAATTCATCTGTCAGAAAATACCTG Coding sequence (CDS) from alignment at Sc0000005:7085118..7087811+ >transcript:BL96663_cuf0 ID=transcript:BL96663_cuf0|Name=transcript:BL96663_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3516bp|location=Sequence derived from alignment at Sc0000005:7085118..7087811+ (Branchiostoma lanceolatum)
AGCACTGAACAGTGCTTGAAAAGGCTGCTCCCATCACAGTACGACGATGG
TTTCATGACCCCGCGCACGACCGGCCAGAATCGCACCCCCCTCCCCAAAG
CCCGACAGGTCAGCCTGGTGATGCACGAGGACCTTCGGAAATCCAGCCCG
GTCAGCACACACATGGTCATGCAGTTCGGACAGTTCCTGGATCACGACAT
CACCCTCACGCCCAACTTCCAGGAGGAAGGTCTTGACTGTACCTGTGACT
CCTTGGACGAACATTGTTTCAACATCCCCGTACCTTCTGATGACCCTGAC
TTCGGTGGAAGGCGCTGCTTGGGGTTCGCCCGCTCCCGATCCTGCCCGAA
CGAAGGGTGCCGCATGGGCCGCCGGCAGCAGCTGAACCAGATCACCGCCT
TCGTGGACGCCTCCAACGTCTACGGCTCCTCGGAGGAAGAGATGACGGCG
CTCAGAGATAGGAGCGGATCTGTTGCTTGCCCCAGTGGCTACCAGATGTA
TAACGGCATCTGCTACAAGGCATTCAACGCCCGAAAGAACTTTCTCGACG
CGTCTTCGACATGTGCAGCTGACGGGGGGACCCTTGCTATGCCAAAGGGC
GCCCTTGCTAACGCTTTCCTGGTCAACCTAAAAAACGCCGTGGATCGGTC
CGGCTCGTTCTGGATCGGCTTGGTGGACCAGCACCAGGAGGGGGGCTGGG
AGTGGATAGACGGCAGACCTCTTGCGAGCTACAACGCATGGGGCCCGGGA
GAACCGAACAACTCTGGCAATGAGGACTGTGCCGAGTTCTTCCCTGACAG
TCATCCGTCCAGAAAGAACACCTGGAACGATGGACAATGTTTTAGGGCTG
ACAGAAAATTCATCTGTCAGAAAATACCTAGCACTGAACAGTGCTTGAAA
AGGCTGCTCCCATCACAGTACGACGATGGTTTCATGACCCCGCGCACGAC
CGGCCAGAATCGCACCCCCCTCCCCAAAGCCCGACAGGTCAGCCTGGTGA
TGCACGAGGACCTTCGGAAATCCAGCCCGGTCAGCACACACATGGTCATG
CAGTTCGGACAGTTCCTGGATCACGACATCACCCTCACGCCCAACTTCCA
GGAGGAAGGTCTTGACTGTACCTGTGACTCCTTGGACGAACATTGTTTCA
ACATCCCCGTACCTTCTGATGACCCTGACTTCGGTGGAAGGCGCTGCTTG
GGGTTCGCCCGCTCCCGATCCTGCCCGAACGAAGGGTGCCGCATGGGCCG
CCGGCAGCAGCTGAACCAGATCACCGCCTTCGTGGACGCCTCCAACGTCT
ACGGCTCCTCGGAGGAAGAGATGACGGCGCTCAGAGATAGGAGCGGATCT
GTTGCTTGCCCCAGTGGCTACCAGATGTATAACGGCATCTGCTACAAGGC
ATTCAACGCCCGAAAGAACTTTCTCGACGCGTCTTCGACATGTGCAGCTG
ACGGGGGGACCCTTGCTATGCCAAAGGGCGCCCTTGCTAACGCTTTCCTG
GTCAACCTAAAAAACGCCGTGGATCGGTCCGGCTCGTTCTGGATCGGCTT
GGTGGACCAGCACCAGGAGGGGGGCTGGGAGTGGATAGACGGCAGACCTC
TTGCGAGCTACAACGCATGGGGCCCGGGAGAACCGAACAACTCTGGCAAT
GAGGACTGTGCCGAGTTCTTCCCTGACAGTCATCCGTCCAGAAAGAACAC
CTGGAACGATGGACAATGTTTTAGGGCTGACAGAAAATTCATCTGTCAGA
AAATACCTAGCACTGAACAGTGCTTGAAAAGGCTGCTCCCATCACAGTAC
GACGATGGTTTCATGACCCCGCGCACGACCGGCCAGAATCGCACCCCCCT
CCCCAAAGCCCGACAGGTCAGCCTGGTGATGCACGAGGACCTTCGGAAAT
CCAGCCCGGTCAGCACACACATGGTCATGCAGTTCGGACAGTTCCTGGAT
CACGACATCACCCTCACGCCCAACTTCCAGGAGGAAGGTCTTGACTGTAC
CTGTGACTCCTTGGACGAACATTGTTTCAACATCCCCGTACCTTCTGATG
ACCCTGACTTCGGTGGAAGGCGCTGCTTGGGGTTCGCCCGCTCCCGATCC
TGCCCGAACGAAGGGTGCCGCATGGGCCGCCGGCAGCAGCTGAACCAGAT
CACCGCCTTCGTGGACGCCTCCAACGTCTACGGCTCCTCGGAGGAAGAGA
TGACGGCGCTCAGAGATAGGAGCGGATCTGTTGCTTGCCCCAGTGGCTAC
CAGATGTATAACGGCATCTGCTACAAGGCATTCAACGCCCGAAAGAACTT
TCTCGACGCGTCTTCGACATGTGCAGCTGACGGGGGGACCCTTGCTATGC
CAAAGGGCGCCCTTGCTAACGCTTTCCTGGTCAACCTAAAAAACGCCGTG
GATCGGTCCGGCTCGTTCTGGATCGGCTTGGTGGACCAGCACCAGGAGGG
GGGCTGGGAGTGGATAGACGGCAGACCTCTTGCGAGCTACAACGCATGGG
GCCCGGGAGAACCGAACAACTCTGGCAATGAGGACTGTGCCGAGTTCTTC
CCTGACAGTCATCCGTCCAGAAAGAACACCTGGAACGATGGACAATGTTT
TAGGGCTGACAGAAAATTCATCTGTCAGAAAATACCTAGCACTGAACAGT
GCTTGAAAAGGCTGCTCCCATCACAGTACGACGATGGTTTCATGACCCCG
CGCACGACCGGCCAGAATCGCACCCCCCTCCCCAAAGCCCGACAGGTCAG
CCTGGTGATGCACGAGGACCTTCGGAAATCCAGCCCGGTCAGCACACACA
TGGTCATGCAGTTCGGACAGTTCCTGGATCACGACATCACCCTCACGCCC
AACTTCCAGGAGGAAGGTCTTGACTGTACCTGTGACTCCTTGGACGAACA
TTGTTTCAACATCCCCGTACCTTCTGATGACCCTGACTTCGGTGGAAGGC
GCTGCTTGGGGTTCGCCCGCTCCCGATCCTGCCCGAACGAAGGGTGCCGC
ATGGGCCGCCGGCAGCAGCTGAACCAGATCACCGCCTTCGTGGACGCCTC
CAACGTCTACGGCTCCTCGGAGGAAGAGATGACGGCGCTCAGAGATAGGA
GCGGATCTGTTGCTTGCCCCAGTGGCTACCAGATGTATAACGGCATCTGC
TACAAGGCATTCAACGCCCGAAAGAACTTTCTCGACGCGTCTTCGACATG
TGCAGCTGACGGGGGGACCCTTGCTATGCCAAAGGGCGCCCTTGCTAACG
CTTTCCTGGTCAACCTAAAAAACGCCGTGGATCGGTCCGGCTCGTTCTGG
ATCGGCTTGGTGGACCAGCACCAGGAGGGGGGCTGGGAGTGGATAGACGG
CAGACCTCTTGCGAGCTACAACGCATGGGGCCCGGGAGAACCGAACAACT
CTGGCAATGAGGACTGTGCCGAGTTCTTCCCTGACAGTCATCCGTCCAGA
AAGAACACCTGGAACGATGGACAATGTTTTAGGGCTGACAGAAAATTCAT
CTGTCAGAAAATACCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000005 | genome | Sc0000005:7085118..7087811 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96663_cuf0 |
| Biotype | protein_coding |
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