transcript:BL96661_cuf27 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96661_cuf27
Unique Nametranscript:BL96661_cuf27
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96661_cuf27

>transcript:BL96661_cuf27-protein ID=transcript:BL96661_cuf27-protein|Name=transcript:BL96661_cuf27|organism=Branchiostoma lanceolatum|type=polypeptide|length=234bp
ECTPCSPGMYCDSTALTEPTAQCWERYYCVSGVDQPNPLMLNDSQCPADT
VHPILGHICPAGHYCPTGTIFPQGCDAGTYNDLTGQFECRPCPAGYYCYS
NTTDYTPNICPSGHFCPLGTTDPQEFACPNGTFNNHTGQDDLQDCEPCSP
GMYCEGSGNTHPTGPCDEGWFCTEGSLDKQPTANGGQCQPGEFCPEGSAA
PQNCTAGFYCDVPGLAATAGSCQAGSYCPTGSSS
Run BLAST on NCBI

mRNA from alignment at Sc0000005:7317785..7319805+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96661_cuf27 ID=transcript:BL96661_cuf27|Name=transcript:BL96661_cuf27|organism=Branchiostoma lanceolatum|type=mRNA|length=2021bp|location=Sequence derived from alignment at Sc0000005:7317785..7319805+ (Branchiostoma lanceolatum)
GAGTGCACGCCCTGCTCACCAGGCATGTACTGCGATAGTACCGCCCTGAC
CGAGCCCACCGCGCAGTGCTGGGAGAGGTACTACTGCGTGTCGGGAGTGG
ACCAGCCCAACCCCCTCATGCTGAACGACTCGCAGTGTCCGGCTGACACC
GTCCACCCCATCCTCGGCCACATCTGCCCCGCCGGACACTACTGCCCAAC
CGGAACCATCTTCCCACAAGGTAAGCATTGCTGGGCTTTATATGTAAAGC
CTTCAGTACACTTCCTGTACAAGTATGGTTGAAAAATTTCTTGTTTTCTT
CACAAATTTATTTTCATGAGGGCAGTCATAACTTAGGGTAAGAAAGCTTA
AAGCATCCGATCCACGGCTCAGTACAAGGATTCCTAGATATTCTGTCTGT
GTAGAAAAGGGGATTAATATTTGTCACCTTCGTAAGTGCTGATTAATGAT
AGAAGTTGTCTGTTATAGAATTCAGTGCAAAGAACATTCTGGAAATTGCA
TGAGCAACAAGCAAACTTTTTGCGAAAAATGTTCACCTTTTAAAGAACAG
TACAGATATAGACTTTTTTCCATTATTTGTGTGTGTTTGTCCCTCAGGCT
GTGATACAGGTATTAAAATCTGACTAGCCAGTCTGAGTGCCAGCCCTGTC
CAGCACGCCACCAGTTACAGACTGCACACATAATGTCTGTACTGAATGTT
TGTAATGTTAACTGTGTGTGTTCTCCTCAGGCTGTGATGCTGGTACGTAC
AACGACCTGACGGGCCAGTTTGAGTGCCGGCCCTGCCCAGCTGGCTACTA
CTGCTACTCCAACACCACAGACTACACTCCCAACATCTGTCCGTCCGGAC
ACTTCTGTCCACTGGGAACCACAGACCCACAGGAGTTTGCCTGTCCCAAT
GGTAAGTCAGAAACGTGGTACAAATGTTTGAATAAACTTGAACAAGCTTT
ACAGGACTATTGTAATAGCAGGTACATTGAATTATTTCACAAACCTCGAC
TCTGTGTATCTAAGTCTGAGCAAGGTTTGAAACAGTTACTATTAAATATA
GATGTATATAAAAGTCACAGGTTCACTACTTGATAGTTTGAAAAAAAGAA
GATTGATCTATCCAGACATCATAATTCTAAGATAATGATACTGAAGCCTG
TAGTTATGGCTTATTATGTTACAAGTATCAGATGTGATCACTTAAACTTT
GGCAAAGCAGCACACCAGACAACTTGGACCATAGACATCAAGCCATCTTG
TGTCATTATTGTACAAAATTAAGCACACAACTTTTTCCTTGTGCTTAAAA
CAGGAACTTTCAACAACCACACCGGCCAGGACGACCTACAGGACTGTGAA
CCCTGCAGCCCGGGGATGTACTGTGAGGGGTCGGGGAACACCCACCCTAC
TGGGCCGTGTGACGAGGGGTGGTTCTGCACAGAAGGGTCGCTGGACAAAC
AGGTAGGGATGTACCTGGGTTGTTTTGGGACCATGCTATAACCCTGCAGC
CCAGGGATGTACTGCAGTACTGTGAATTCATTTTTTTGCAGAGACTTGAT
TTCACGGTTGAAACAGTTCCGTAGGAAAGCCATAATACACCTGGCACACA
TATTTCTGGTGTTATGAATTTACAGTGGATAGGTCAGCACAAAAACTGTA
AATATAAATCCACCACAAACATTTTAAGATATTCAGTATCCCTTTTCTAG
CCAATGCCAACCACGGGCTCGTATAAAAGTTGTCAGATAGCCTTTTTAGT
AACAGGAATTGCCTTTGCAAATTGGACATGGATTTTCTAAGAGTTAAACT
TTCAATGTTGCTGGATATCGTACTTCTACTCACTGTGCTTTATTCCCCCC
TGCCTAGCCCACTGCTAATGGTGGTCAGTGCCAGCCCGGAGAGTTCTGCC
CTGAAGGGTCAGCCGCCCCACAGAACTGCACAGCTGGGTTTTACTGCGAC
GTCCCGGGTCTGGCTGCCACGGCTGGGTCGTGCCAGGCTGGGTCATACTG
TCCCACGGGGTCATCTTCACC

Coding sequence (CDS) from alignment at Sc0000005:7317785..7319805+

>transcript:BL96661_cuf27 ID=transcript:BL96661_cuf27|Name=transcript:BL96661_cuf27|organism=Branchiostoma lanceolatum|type=CDS|length=2808bp|location=Sequence derived from alignment at Sc0000005:7317785..7319805+ (Branchiostoma lanceolatum)
GAGTGCACGCCCTGCTCACCAGGCATGTACTGCGATAGTACCGCCCTGAC
CGAGCCCACCGCGCAGTGCTGGGAGAGGTACTACTGCGTGTCGGGAGTGG
ACCAGCCCAACCCCCTCATGCTGAACGACTCGCAGTGTCCGGCTGACACC
GTCCACCCCATCCTCGGCCACATCTGCCCCGCCGGACACTACTGCCCAAC
CGGAACCATCTTCCCACAAGGCTGTGATGCTGGTACGTACAACGACCTGA
CGGGCCAGTTTGAGTGCCGGCCCTGCCCAGCTGGCTACTACTGCTACTCC
AACACCACAGACTACACTCCCAACATCTGTCCGTCCGGACACTTCTGTCC
ACTGGGAACCACAGACCCACAGGAGTTTGCCTGTCCCAATGGAACTTTCA
ACAACCACACCGGCCAGGACGACCTACAGGACTGTGAACCCTGCAGCCCG
GGGATGTACTGTGAGGGGTCGGGGAACACCCACCCTACTGGGCCGTGTGA
CGAGGGGTGGTTCTGCACAGAAGGGTCGCTGGACAAACAGCCCACTGCTA
ATGGTGGTCAGTGCCAGCCCGGAGAGTTCTGCCCTGAAGGGTCAGCCGCC
CCACAGAACTGCACAGCTGGGTTTTACTGCGACGTCCCGGGTCTGGCTGC
CACGGCTGGGTCGTGCCAGGCTGGGTCATACTGTCCCACGGGGTCATCTT
CAGAGTGCACGCCCTGCTCACCAGGCATGTACTGCGATAGTACCGCCCTG
ACCGAGCCCACCGCGCAGTGCTGGGAGAGGTACTACTGCGTGTCGGGAGT
GGACCAGCCCAACCCCCTCATGCTGAACGACTCGCAGTGTCCGGCTGACA
CCGTCCACCCCATCCTCGGCCACATCTGCCCCGCCGGACACTACTGCCCA
ACCGGAACCATCTTCCCACAAGGCTGTGATGCTGGTACGTACAACGACCT
GACGGGCCAGTTTGAGTGCCGGCCCTGCCCAGCTGGCTACTACTGCTACT
CCAACACCACAGACTACACTCCCAACATCTGTCCGTCCGGACACTTCTGT
CCACTGGGAACCACAGACCCACAGGAGTTTGCCTGTCCCAATGGAACTTT
CAACAACCACACCGGCCAGGACGACCTACAGGACTGTGAACCCTGCAGCC
CGGGGATGTACTGTGAGGGGTCGGGGAACACCCACCCTACTGGGCCGTGT
GACGAGGGGTGGTTCTGCACAGAAGGGTCGCTGGACAAACAGCCCACTGC
TAATGGTGGTCAGTGCCAGCCCGGAGAGTTCTGCCCTGAAGGGTCAGCCG
CCCCACAGAACTGCACAGCTGGGTTTTACTGCGACGTCCCGGGTCTGGCT
GCCACGGCTGGGTCGTGCCAGGCTGGGTCATACTGTCCCACGGGGTCATC
TTCAGAGTGCACGCCCTGCTCACCAGGCATGTACTGCGATAGTACCGCCC
TGACCGAGCCCACCGCGCAGTGCTGGGAGAGGTACTACTGCGTGTCGGGA
GTGGACCAGCCCAACCCCCTCATGCTGAACGACTCGCAGTGTCCGGCTGA
CACCGTCCACCCCATCCTCGGCCACATCTGCCCCGCCGGACACTACTGCC
CAACCGGAACCATCTTCCCACAAGGCTGTGATGCTGGTACGTACAACGAC
CTGACGGGCCAGTTTGAGTGCCGGCCCTGCCCAGCTGGCTACTACTGCTA
CTCCAACACCACAGACTACACTCCCAACATCTGTCCGTCCGGACACTTCT
GTCCACTGGGAACCACAGACCCACAGGAGTTTGCCTGTCCCAATGGAACT
TTCAACAACCACACCGGCCAGGACGACCTACAGGACTGTGAACCCTGCAG
CCCGGGGATGTACTGTGAGGGGTCGGGGAACACCCACCCTACTGGGCCGT
GTGACGAGGGGTGGTTCTGCACAGAAGGGTCGCTGGACAAACAGCCCACT
GCTAATGGTGGTCAGTGCCAGCCCGGAGAGTTCTGCCCTGAAGGGTCAGC
CGCCCCACAGAACTGCACAGCTGGGTTTTACTGCGACGTCCCGGGTCTGG
CTGCCACGGCTGGGTCGTGCCAGGCTGGGTCATACTGTCCCACGGGGTCA
TCTTCAGAGTGCACGCCCTGCTCACCAGGCATGTACTGCGATAGTACCGC
CCTGACCGAGCCCACCGCGCAGTGCTGGGAGAGGTACTACTGCGTGTCGG
GAGTGGACCAGCCCAACCCCCTCATGCTGAACGACTCGCAGTGTCCGGCT
GACACCGTCCACCCCATCCTCGGCCACATCTGCCCCGCCGGACACTACTG
CCCAACCGGAACCATCTTCCCACAAGGCTGTGATGCTGGTACGTACAACG
ACCTGACGGGCCAGTTTGAGTGCCGGCCCTGCCCAGCTGGCTACTACTGC
TACTCCAACACCACAGACTACACTCCCAACATCTGTCCGTCCGGACACTT
CTGTCCACTGGGAACCACAGACCCACAGGAGTTTGCCTGTCCCAATGGAA
CTTTCAACAACCACACCGGCCAGGACGACCTACAGGACTGTGAACCCTGC
AGCCCGGGGATGTACTGTGAGGGGTCGGGGAACACCCACCCTACTGGGCC
GTGTGACGAGGGGTGGTTCTGCACAGAAGGGTCGCTGGACAAACAGCCCA
CTGCTAATGGTGGTCAGTGCCAGCCCGGAGAGTTCTGCCCTGAAGGGTCA
GCCGCCCCACAGAACTGCACAGCTGGGTTTTACTGCGACGTCCCGGGTCT
GGCTGCCACGGCTGGGTCGTGCCAGGCTGGGTCATACTGTCCCACGGGGT
CATCTTCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96661gene:BL96661Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96661_cuf27transcript:BL96661_cuf27-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96661_cuf27-E1BL96661_cuf27-E1-1564476830-64448Branchiostoma lanceolatumexon
BL96661_cuf27-E2BL96661_cuf27-E2-1564476830-64450Branchiostoma lanceolatumexon
BL96661_cuf27-E3BL96661_cuf27-E3-1564476830-64452Branchiostoma lanceolatumexon
BL96661_cuf27-E4BL96661_cuf27-E4-1564476830-64455Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000005genomeSc0000005:7317785..7319805 +
Properties
Property NameValue
Transcript idBL96661_cuf27
Biotypeprotein_coding