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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96644_cuf5 >transcript:BL96644_cuf5-protein ID=transcript:BL96644_cuf5-protein|Name=transcript:BL96644_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=245bp
FIPSNTYSFSVAENSAVGTAVGTVYAGVAGGQIAFSASPVVSTGGAVTFA
ISTATEHNGAQATTLFQISNSSSGPITILFPPDRETDDAVQFVVIASSVG
PPALSAEATIFVDITDVNDNTPVFISSFYSGECGTTSDFGQAIVTISATD
ADEGTSGTVTYGESAEYPTLFELDTSTGNIRLVVDQTLATLNAYLMTMTG
TDGGSPALSSQTTVRIDAYDPYTTLVDIELSMTEDEFWTKKDTFL Run BLAST on NCBI mRNA from alignment at Sc0000190:180534..183776+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96644_cuf5 ID=transcript:BL96644_cuf5|Name=transcript:BL96644_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=3243bp|location=Sequence derived from alignment at Sc0000190:180534..183776+ (Branchiostoma lanceolatum)
TTCATCCCGAGCAACACGTACAGCTTCAGCGTGGCGGAGAACTCCGCCGT
GGGGACGGCCGTGGGGACTGTGTACGCAGGCGTGGCGGGCGGACAGATTG
CCTTCTCAGCCTCACCTGTCGTCTCCACCGGAGGTAAGAACAACTACTGT
AAATGCAGAAATGTTCGCGGTTTTCGCAAGGACCGTTTCACCGCGAACTT
AAAACCACTGCAAACATTTTTGTCCAATACTGTAGCAGTATGTGACTATA
GCGCTGCCGGGAAATTGAAACCACAGCGAACACTCCATTTTACCCTTAGC
GCGAAAAAAAAAGACGCAAACTTGAATGCATTTACAGTAGTAATAATTTT
TGTTACATTACTTTTCCCTGCGTATACTGTACCTGTTACTACCCTTTTGT
TTATCTCACTTACTACATTTATTTATTATGAGAAATATCAGGTCAAAAAC
TTTGGTTTTCTGTTCATTCGTATATATGATTTGGTGTCTCGGTCCAGTAA
TTGTCCATTTTGTTCACATGTATATTATTTTATTGATTCATATTTTTTCA
ACCCTCTGTAAGATACTTTTGTTGATTCTGTACATCTGTCATCATCTATG
TATATAATACTGGTGTCTTGTAAGCCTACACGGGCTGGGCACATAATGTA
CAAGACACATAAATACAAATTTCATTCATTCCTTTCAAAATAAAAATTCA
TTTTAAATTTGTTTCCCTATTTCATAACTCAATATGTCTCTATTCGTCCC
CCTCATGCGTTACATGTGTATAATCTAACCGTCGAAATGTCTGTTGTACT
CATGTAACCAATAAGGAGAAAAAGCGTGTTTTTTTTTGTTTTTTTTTGTT
TTTTTTTGTTTTTTTGTTATCAAGCACATACAAGTTTGGCAAAGATGATT
CGGTGTATTTGAATTTAAGTGCTTTTTCTGTCAAAACCAAATTGAAACAG
ACCAACGTCAAGTTACAATAGCTACTGCTAGTCGGGCAACCTTGGCTGTT
GTACCATGTATACAGCCAGACGAATAAATAAATAAATAAATAAACAGACC
AACGCCACATACATCCGAGACAAGCTGATAGATTTAACTACAATCTACAA
ATGAAGGACACGATCTCAACTTTGGCAAATATTTCTAGGTGCCGTAACGT
TTGCGATCTCCACTGCCACGGAGCACAACGGAGCCCAGGCGACCACCCTG
TTTCAGATTTCCAACTCCAGCTCCGGGCCTATCACGGTAAGCAGCTATTA
GCACTTTTGTGCAAATGATTTGATGATTTGACATTGGATTTCTCGTACAC
GTGTTATTGAACAGATTTTTTCTCGCATTTTCCCCCAAAAATAAGTTTGT
ATGTGGCCGTCAATTGCACCGGTACCCTATATGCCTTAGAAAAATTTCAA
ATATCTATTGAAATATATGGTATGTATATATCATGTTTGAATGTTTTGAA
TGGTAAGCATAGCACAACGCATAATGTAGAAACTGTTTTAATACGTTACC
CGAGAGGGGTTGTTGGTATTTTCATCACCAATATTACGTGCTTATCAGCC
CGCACTAAATTTACTTTTACTGCTTGGTCTTAGCTACTTTTCCGACGGTT
TCTGTCTTCGGTGCTGAGATTTCAATTAATATTATAAAAATCATCTCAAA
TATGATAATTATATTCCTTGCATTTTATCTCGTCAGATTCTCTTCCCTCC
TGACCGAGAGACGGACGACGCCGTCCAGTTCGTGGTGATCGCCAGCAGTG
TCGGTCCGCCCGCCCTGTCCGCCGAGGCGACCATCTTCGTCGACATCACA
GACGTGAACGACAACACTCCAGTCTTCATCAGCAGCTTCTACAGGTGATC
TAAACATGCCTTTTCACCACCGTTAGATACCATTTGTTAGATATCATTTG
AACATCGTTTGTTACTTGAGCATTTCAGATGACGTACAGTAGATCTAAGC
AATGGTAATAATGAATCTGGATGATGTAAAATTCCACATATTTTTGATAA
CCGTTACCTTTTAATCTGTTGCAGCAACGGTGTTTAAGTCTGCTATACAC
GTAGATTCTTGTTTAAGGATCCAACCACGTATAGGAGCTACATTGTTTCT
GTGGCCGGCTTCTCTCTGATATTTTGATCCGAAAACCCAAATACTAAAAT
GAAATACGTATTAATTCCTCATTTATCATCACTTGATATTTATAGTGATG
GCATTGTCATCTGATGTGTATACGTCAGATTTTATGTCACGAGCACACAA
ATGTGTCAAAAAAGACATTGACATATACATTGTTCAAACGTGTTGGCAAC
ATGTGTCAGAAGACTATACATCTAGTTTCGAACAGCGAAATTACTCGTAC
GTTATTAATGCTTCAGCGGAGAGTGCGGCACGACGAGTGACTTCGGACAG
GCCATCGTGACGATCAGCGCCACGGACGCGGACGAGGGCACCAGCGGAAC
GGTGACGTACGGGGAATCCGCCGAGTACCCCACTCTGTTCGAACTGGACA
CATCAACCGGTAAGAATACTCAGTCACTAACCCAACTATTCCTTTACACA
ACATGCTCAGCTCTACATACAGTGCATGATGAGAATCAAATTTGCAATTT
TAGCATAATCTTATATCTTTTGCAATGAGAGATAACGGCATTTCGAATAT
CATCTTGACTTTGACGGACTGTTAAGCACATCTTCACACATGTTCCAAGA
GTTTTCCTCGTTCGTTTTTGGTTACACCCGACGGGATTTCAATTCTAGTC
TGATCCAACACATAGTAACTTTATATCAGACGGTTAAATAGAAATGTTGT
TCGTTGATGATTTTCAAACGTTGTTCTTACGAAACGCAAGGACAAGATGC
GCATTGCATTCTCAACATATAGATCAGAGAACCTTGTCTATTTATAATTG
ACTCATCGAATATTTTCAATGCCTATCTCATGACCATGACGGCCACCGAC
GGGGGCTCATCTGATTCTCGACTAAACAACAAAACCATAACCTCTTTACC
ACTCGACTTACCGAATCTCTTTACAACTGTTTCACCAGGAAACATCCGCC
TAGTCGTCGACCAGACGCTGGCTACCCTGAATGCCTATCTCATGACCATG
ACGGGAACTGACGGTGGATCCCCGGCCCTGTCGTCCCAGACCACCGTCAG
GATCGACGCCTATGACCCCTACACCACCCTGGTGGACATCGAGCTGTCCA
TGACCGAGGACGAGTTCTGGACCAAGAAGGACACGTTCTTGGG Coding sequence (CDS) from alignment at Sc0000190:180534..183776+ >transcript:BL96644_cuf5 ID=transcript:BL96644_cuf5|Name=transcript:BL96644_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=3675bp|location=Sequence derived from alignment at Sc0000190:180534..183776+ (Branchiostoma lanceolatum)
TTCATCCCGAGCAACACGTACAGCTTCAGCGTGGCGGAGAACTCCGCCGT
GGGGACGGCCGTGGGGACTGTGTACGCAGGCGTGGCGGGCGGACAGATTG
CCTTCTCAGCCTCACCTGTCGTCTCCACCGGAGGTGCCGTAACGTTTGCG
ATCTCCACTGCCACGGAGCACAACGGAGCCCAGGCGACCACCCTGTTTCA
GATTTCCAACTCCAGCTCCGGGCCTATCACGATTCTCTTCCCTCCTGACC
GAGAGACGGACGACGCCGTCCAGTTCGTGGTGATCGCCAGCAGTGTCGGT
CCGCCCGCCCTGTCCGCCGAGGCGACCATCTTCGTCGACATCACAGACGT
GAACGACAACACTCCAGTCTTCATCAGCAGCTTCTACAGCGGAGAGTGCG
GCACGACGAGTGACTTCGGACAGGCCATCGTGACGATCAGCGCCACGGAC
GCGGACGAGGGCACCAGCGGAACGGTGACGTACGGGGAATCCGCCGAGTA
CCCCACTCTGTTCGAACTGGACACATCAACCGGAAACATCCGCCTAGTCG
TCGACCAGACGCTGGCTACCCTGAATGCCTATCTCATGACCATGACGGGA
ACTGACGGTGGATCCCCGGCCCTGTCGTCCCAGACCACCGTCAGGATCGA
CGCCTATGACCCCTACACCACCCTGGTGGACATCGAGCTGTCCATGACCG
AGGACGAGTTCTGGACCAAGAAGGACACGTTCTTGTTCATCCCGAGCAAC
ACGTACAGCTTCAGCGTGGCGGAGAACTCCGCCGTGGGGACGGCCGTGGG
GACTGTGTACGCAGGCGTGGCGGGCGGACAGATTGCCTTCTCAGCCTCAC
CTGTCGTCTCCACCGGAGGTGCCGTAACGTTTGCGATCTCCACTGCCACG
GAGCACAACGGAGCCCAGGCGACCACCCTGTTTCAGATTTCCAACTCCAG
CTCCGGGCCTATCACGATTCTCTTCCCTCCTGACCGAGAGACGGACGACG
CCGTCCAGTTCGTGGTGATCGCCAGCAGTGTCGGTCCGCCCGCCCTGTCC
GCCGAGGCGACCATCTTCGTCGACATCACAGACGTGAACGACAACACTCC
AGTCTTCATCAGCAGCTTCTACAGCGGAGAGTGCGGCACGACGAGTGACT
TCGGACAGGCCATCGTGACGATCAGCGCCACGGACGCGGACGAGGGCACC
AGCGGAACGGTGACGTACGGGGAATCCGCCGAGTACCCCACTCTGTTCGA
ACTGGACACATCAACCGGAAACATCCGCCTAGTCGTCGACCAGACGCTGG
CTACCCTGAATGCCTATCTCATGACCATGACGGGAACTGACGGTGGATCC
CCGGCCCTGTCGTCCCAGACCACCGTCAGGATCGACGCCTATGACCCCTA
CACCACCCTGGTGGACATCGAGCTGTCCATGACCGAGGACGAGTTCTGGA
CCAAGAAGGACACGTTCTTGTTCATCCCGAGCAACACGTACAGCTTCAGC
GTGGCGGAGAACTCCGCCGTGGGGACGGCCGTGGGGACTGTGTACGCAGG
CGTGGCGGGCGGACAGATTGCCTTCTCAGCCTCACCTGTCGTCTCCACCG
GAGGTGCCGTAACGTTTGCGATCTCCACTGCCACGGAGCACAACGGAGCC
CAGGCGACCACCCTGTTTCAGATTTCCAACTCCAGCTCCGGGCCTATCAC
GATTCTCTTCCCTCCTGACCGAGAGACGGACGACGCCGTCCAGTTCGTGG
TGATCGCCAGCAGTGTCGGTCCGCCCGCCCTGTCCGCCGAGGCGACCATC
TTCGTCGACATCACAGACGTGAACGACAACACTCCAGTCTTCATCAGCAG
CTTCTACAGCGGAGAGTGCGGCACGACGAGTGACTTCGGACAGGCCATCG
TGACGATCAGCGCCACGGACGCGGACGAGGGCACCAGCGGAACGGTGACG
TACGGGGAATCCGCCGAGTACCCCACTCTGTTCGAACTGGACACATCAAC
CGGAAACATCCGCCTAGTCGTCGACCAGACGCTGGCTACCCTGAATGCCT
ATCTCATGACCATGACGGGAACTGACGGTGGATCCCCGGCCCTGTCGTCC
CAGACCACCGTCAGGATCGACGCCTATGACCCCTACACCACCCTGGTGGA
CATCGAGCTGTCCATGACCGAGGACGAGTTCTGGACCAAGAAGGACACGT
TCTTGTTCATCCCGAGCAACACGTACAGCTTCAGCGTGGCGGAGAACTCC
GCCGTGGGGACGGCCGTGGGGACTGTGTACGCAGGCGTGGCGGGCGGACA
GATTGCCTTCTCAGCCTCACCTGTCGTCTCCACCGGAGGTGCCGTAACGT
TTGCGATCTCCACTGCCACGGAGCACAACGGAGCCCAGGCGACCACCCTG
TTTCAGATTTCCAACTCCAGCTCCGGGCCTATCACGATTCTCTTCCCTCC
TGACCGAGAGACGGACGACGCCGTCCAGTTCGTGGTGATCGCCAGCAGTG
TCGGTCCGCCCGCCCTGTCCGCCGAGGCGACCATCTTCGTCGACATCACA
GACGTGAACGACAACACTCCAGTCTTCATCAGCAGCTTCTACAGCGGAGA
GTGCGGCACGACGAGTGACTTCGGACAGGCCATCGTGACGATCAGCGCCA
CGGACGCGGACGAGGGCACCAGCGGAACGGTGACGTACGGGGAATCCGCC
GAGTACCCCACTCTGTTCGAACTGGACACATCAACCGGAAACATCCGCCT
AGTCGTCGACCAGACGCTGGCTACCCTGAATGCCTATCTCATGACCATGA
CGGGAACTGACGGTGGATCCCCGGCCCTGTCGTCCCAGACCACCGTCAGG
ATCGACGCCTATGACCCCTACACCACCCTGGTGGACATCGAGCTGTCCAT
GACCGAGGACGAGTTCTGGACCAAGAAGGACACGTTCTTGTTCATCCCGA
GCAACACGTACAGCTTCAGCGTGGCGGAGAACTCCGCCGTGGGGACGGCC
GTGGGGACTGTGTACGCAGGCGTGGCGGGCGGACAGATTGCCTTCTCAGC
CTCACCTGTCGTCTCCACCGGAGGTGCCGTAACGTTTGCGATCTCCACTG
CCACGGAGCACAACGGAGCCCAGGCGACCACCCTGTTTCAGATTTCCAAC
TCCAGCTCCGGGCCTATCACGATTCTCTTCCCTCCTGACCGAGAGACGGA
CGACGCCGTCCAGTTCGTGGTGATCGCCAGCAGTGTCGGTCCGCCCGCCC
TGTCCGCCGAGGCGACCATCTTCGTCGACATCACAGACGTGAACGACAAC
ACTCCAGTCTTCATCAGCAGCTTCTACAGCGGAGAGTGCGGCACGACGAG
TGACTTCGGACAGGCCATCGTGACGATCAGCGCCACGGACGCGGACGAGG
GCACCAGCGGAACGGTGACGTACGGGGAATCCGCCGAGTACCCCACTCTG
TTCGAACTGGACACATCAACCGGAAACATCCGCCTAGTCGTCGACCAGAC
GCTGGCTACCCTGAATGCCTATCTCATGACCATGACGGGAACTGACGGTG
GATCCCCGGCCCTGTCGTCCCAGACCACCGTCAGGATCGACGCCTATGAC
CCCTACACCACCCTGGTGGACATCGAGCTGTCCATGACCGAGGACGAGTT
CTGGACCAAGAAGGACACGTTCTTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000190 | genome | Sc0000190:180534..183776 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96644_cuf5 |
| Biotype | protein_coding |
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