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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96643_cuf3 >transcript:BL96643_cuf3-protein ID=transcript:BL96643_cuf3-protein|Name=transcript:BL96643_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=288bp
LITVQSTTSLDYETTTQYALTVLGTDGATGADQRTATVTVYVDVDPANEH
DPVFTSPSSSPFAVTIAESAALGSQLYTVVATDQDSGTDGQIKFSITSGD
LGKFNIDETTGVVYVADTLDKETLDTYSLAIRATDQGSTARTADVTLAVT
VSDVNDNGPVCSPDVYTSTLAEDTSAGTLVAWVLCTDADIDATNNALTFS
ITAGNTEGKFEVNTAGIVTVATGQTLDYETTTSYLLDVSVSDVSGVAVTA
EVAVVVTGVNEFPPAFTATTYSATVVENQSTGTLVTSV Run BLAST on NCBI mRNA from alignment at Sc0000190:175008..177716+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96643_cuf3 ID=transcript:BL96643_cuf3|Name=transcript:BL96643_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2709bp|location=Sequence derived from alignment at Sc0000190:175008..177716+ (Branchiostoma lanceolatum)
CCTCATCACCGTGCAGTCGACCACCTCGCTTGACTACGAGACCACAACGC
AGTACGCCCTGACCGTCCTCGGCACCGACGGGGCCACCGGGGCCGACCAG
AGGACGGCTACGGTCACGGTCTACGTCGACGTGGACCCGGCTAACGAGCA
CGACCCAGTGTTCACGTCCCCGAGCAGCTCCCCGTTTGCTGTGACGATTG
CCGAGAGCGCGGCGCTGGGAAGTCAGCTCTACACGGTTGTGGCGACGGAC
CAGGACAGCGGAACGGACGGACAAATAAAGTGAGAACACCGTATTCCTTT
GTTGCCAACTAATTGCACACACGTCTACGGAGGATATACAGAGTAGAAAT
TGTAAATAACTTATTTGCAGCGTGAAACATTTGTAACATTTTATGATCAT
AACTTAGGGACATGCGGGGGTAAAAGTGAAAATGGTGATACCCGGACTAG
AAAGAATTAATGGTTAAAGTATTTGTTGATTGGTTTTTTTCAAATCTCAC
AACATATGTGGATGGGGTAAAAGAACATGTGTATCTCACCTTAAAGTCGC
TCTCACCTCAGCATACAAGTGCAATAAATTGAGGTTGTGCTAGATTAAAT
TAACTTTATCTGTAACCCTTAGAAAGCTAAAGGTAGGTACTTTTGGTCGC
AATCGCAACGAAATTATACCCATATGAGTGTCGCAGTGCTCTTTATCTAT
GATACATCGTTCTACAGGTTCAGCATCACTTCCGGTGACCTAGGAAAATT
CAACATCGATGAAACCACCGGTGTAGTGTACGTGGCCGACACCCTGGACA
AGGAGACCCTGGACACCTACAGTCTGGCCATCCGGGCCACTGACCAGGGC
AGCACCGCAAGGACTGCTGACGTCACACTGGCCGTCACCGTTAGTGACGT
CAACGACAACGGCCCCGTGTGCTCACCTGACGTCTACACGTCGACGCTAG
CGGAGGACACCAGCGCAGGTAATGAGTTAATGAAGTAATCATGCAAATTG
GGGAAGGGGGGAGGAAGGAACGAATGAATGAATGAACAAGTAAGAAAGGG
AGTGAAGAATGAAAGAATAGATTAATAAATGAAAACCTTATTACTGCAGC
CTAGCCCGAATGGGTGGAAACTACACAATACACAATACACCTTGGAATTT
GCGCTTCAAAAGAACGTTATCATAATTCTTCTCTGCAAGTATCACATTAT
CTACCGTTGTTAATTTCTTTCTCTTGTTTAACCGAAGAGTAATTAATTGA
TTGATTTCTTCTTTAATGACGGCGCTTATACGCGTTCTTAAACTCAAGTG
CGTTAACATTCCGTCTGTTTTTGTTTGGGTTTGTTTGATTGATCAATATC
AAACAAAACAATACAATAAGAGTCAGAGTGTTATGATGTCAGAAAAATCA
AATAATGTATTATTTAGCGAAATGTCTGTAACGGAACAGCATTACAGAAA
AAGATGTGAACAATAATGATACGACTTCAAATCACATCACTACAGTTGCA
AGGTGGGCAATTAAATTATTGCCATGGTGGCGATTGGATGTTTATTGTAA
GTGTTACTCACCAGTCAAAAAACTTTCTGTATTGTGAACCGCCTTCCCTA
TAGGTAGTATCTGAACTAGCAATATCGCAAAGACAATCGAATAGCTCAAC
TGTTGGGTCTCTCAATTATCAATTGCTTGCTGTTCTTTTAAAAACTCCTT
TAGGTCACTGCCGTAATTATAAGCCCATTTCTGGCCTTGAATATCTGTCT
CAGGTATAGAGCTAAAACAGTCTATAAAACAAGACAATCTGAAACGCCTC
CCAAAACTCTAGAGACTAATCTGTGTGTGTGCACTCATCAGGTACCCTGG
TGGCCTGGGTCCTTTGTACGGACGCCGACATTGACGCCACCAACAACGCC
CTCACCTTCAGCATCACTGCTGGGAACACAGAAGGGAAGTTCGAGGTGAA
TACTGCTGGAATAGTGACCGTGGCGACAGGACAGACATTGGACTACGAAA
CGACCACCAGTTATCTATTGGACGTGTCCGTTAGTGACGTCAGTGGTGTG
GCTGTGACAGCTGAGGTGGCGGTGGTGGTGACCGGTACGTGTCATTTTTC
CTTTGTTTCTAGGTGCAAGGTGTGGTTTCATGTGTACTAGTAGTAGTCTA
ACCTAGTGAAAGTGGCGTGAGTAGGGTGCTCGCCTTGCATTCAGAAGGTC
TAAGATTTAAACCTCGGCCGAGTCATACCGTATTGTGTGTGCGTATAATG
TTAAGCACAAAGGATATGTGTGTTTGTATGGGCAGATAGTGTTCAGCACC
AAGGACAGGAGTGATTATGTGTGCGGATATCTGTTCATCTCCAAGGACCG
ATGTCTTTGTGTGCGGATAATGTTGAGAACCAAGTACAGCTGTGTTTAAA
ATGTTTACTTGATCCAGGGATGTCCAAAGCAGATGTAAGCAGATGTAATG
ATCCGACTCATCCTGGAAGGAGGCGAATGGTTAGAAAACACAATACTAAA
AAAAGACTGCTAAAATTTTGCAAAAATTGGCGGAAAACACGGAGAATGAA
CCTTGCATTTGGTTGGAGATTACAAAAGACGATAAACCGATGTGTTTTTT
ACGTTTCTATGTCAGGTGTGAATGAATTCCCACCGGCCTTCACGGCGACC
ACCTACTCGGCCACTGTTGTAGAGAACCAGTCCACGGGGACCCTTGTGAC
GTCAGTCGC Coding sequence (CDS) from alignment at Sc0000190:175008..177716+ >transcript:BL96643_cuf3 ID=transcript:BL96643_cuf3|Name=transcript:BL96643_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3456bp|location=Sequence derived from alignment at Sc0000190:175008..177716+ (Branchiostoma lanceolatum)
CTCATCACCGTGCAGTCGACCACCTCGCTTGACTACGAGACCACAACGCA
GTACGCCCTGACCGTCCTCGGCACCGACGGGGCCACCGGGGCCGACCAGA
GGACGGCTACGGTCACGGTCTACGTCGACGTGGACCCGGCTAACGAGCAC
GACCCAGTGTTCACGTCCCCGAGCAGCTCCCCGTTTGCTGTGACGATTGC
CGAGAGCGCGGCGCTGGGAAGTCAGCTCTACACGGTTGTGGCGACGGACC
AGGACAGCGGAACGGACGGACAAATAAAGTTCAGCATCACTTCCGGTGAC
CTAGGAAAATTCAACATCGATGAAACCACCGGTGTAGTGTACGTGGCCGA
CACCCTGGACAAGGAGACCCTGGACACCTACAGTCTGGCCATCCGGGCCA
CTGACCAGGGCAGCACCGCAAGGACTGCTGACGTCACACTGGCCGTCACC
GTTAGTGACGTCAACGACAACGGCCCCGTGTGCTCACCTGACGTCTACAC
GTCGACGCTAGCGGAGGACACCAGCGCAGGTACCCTGGTGGCCTGGGTCC
TTTGTACGGACGCCGACATTGACGCCACCAACAACGCCCTCACCTTCAGC
ATCACTGCTGGGAACACAGAAGGGAAGTTCGAGGTGAATACTGCTGGAAT
AGTGACCGTGGCGACAGGACAGACATTGGACTACGAAACGACCACCAGTT
ATCTATTGGACGTGTCCGTTAGTGACGTCAGTGGTGTGGCTGTGACAGCT
GAGGTGGCGGTGGTGGTGACCGGTGTGAATGAATTCCCACCGGCCTTCAC
GGCGACCACCTACTCGGCCACTGTTGTAGAGAACCAGTCCACGGGGACCC
TTGTGACGTCAGTCCTCATCACCGTGCAGTCGACCACCTCGCTTGACTAC
GAGACCACAACGCAGTACGCCCTGACCGTCCTCGGCACCGACGGGGCCAC
CGGGGCCGACCAGAGGACGGCTACGGTCACGGTCTACGTCGACGTGGACC
CGGCTAACGAGCACGACCCAGTGTTCACGTCCCCGAGCAGCTCCCCGTTT
GCTGTGACGATTGCCGAGAGCGCGGCGCTGGGAAGTCAGCTCTACACGGT
TGTGGCGACGGACCAGGACAGCGGAACGGACGGACAAATAAAGTTCAGCA
TCACTTCCGGTGACCTAGGAAAATTCAACATCGATGAAACCACCGGTGTA
GTGTACGTGGCCGACACCCTGGACAAGGAGACCCTGGACACCTACAGTCT
GGCCATCCGGGCCACTGACCAGGGCAGCACCGCAAGGACTGCTGACGTCA
CACTGGCCGTCACCGTTAGTGACGTCAACGACAACGGCCCCGTGTGCTCA
CCTGACGTCTACACGTCGACGCTAGCGGAGGACACCAGCGCAGGTACCCT
GGTGGCCTGGGTCCTTTGTACGGACGCCGACATTGACGCCACCAACAACG
CCCTCACCTTCAGCATCACTGCTGGGAACACAGAAGGGAAGTTCGAGGTG
AATACTGCTGGAATAGTGACCGTGGCGACAGGACAGACATTGGACTACGA
AACGACCACCAGTTATCTATTGGACGTGTCCGTTAGTGACGTCAGTGGTG
TGGCTGTGACAGCTGAGGTGGCGGTGGTGGTGACCGGTGTGAATGAATTC
CCACCGGCCTTCACGGCGACCACCTACTCGGCCACTGTTGTAGAGAACCA
GTCCACGGGGACCCTTGTGACGTCAGTCCTCATCACCGTGCAGTCGACCA
CCTCGCTTGACTACGAGACCACAACGCAGTACGCCCTGACCGTCCTCGGC
ACCGACGGGGCCACCGGGGCCGACCAGAGGACGGCTACGGTCACGGTCTA
CGTCGACGTGGACCCGGCTAACGAGCACGACCCAGTGTTCACGTCCCCGA
GCAGCTCCCCGTTTGCTGTGACGATTGCCGAGAGCGCGGCGCTGGGAAGT
CAGCTCTACACGGTTGTGGCGACGGACCAGGACAGCGGAACGGACGGACA
AATAAAGTTCAGCATCACTTCCGGTGACCTAGGAAAATTCAACATCGATG
AAACCACCGGTGTAGTGTACGTGGCCGACACCCTGGACAAGGAGACCCTG
GACACCTACAGTCTGGCCATCCGGGCCACTGACCAGGGCAGCACCGCAAG
GACTGCTGACGTCACACTGGCCGTCACCGTTAGTGACGTCAACGACAACG
GCCCCGTGTGCTCACCTGACGTCTACACGTCGACGCTAGCGGAGGACACC
AGCGCAGGTACCCTGGTGGCCTGGGTCCTTTGTACGGACGCCGACATTGA
CGCCACCAACAACGCCCTCACCTTCAGCATCACTGCTGGGAACACAGAAG
GGAAGTTCGAGGTGAATACTGCTGGAATAGTGACCGTGGCGACAGGACAG
ACATTGGACTACGAAACGACCACCAGTTATCTATTGGACGTGTCCGTTAG
TGACGTCAGTGGTGTGGCTGTGACAGCTGAGGTGGCGGTGGTGGTGACCG
GTGTGAATGAATTCCCACCGGCCTTCACGGCGACCACCTACTCGGCCACT
GTTGTAGAGAACCAGTCCACGGGGACCCTTGTGACGTCAGTCCTCATCAC
CGTGCAGTCGACCACCTCGCTTGACTACGAGACCACAACGCAGTACGCCC
TGACCGTCCTCGGCACCGACGGGGCCACCGGGGCCGACCAGAGGACGGCT
ACGGTCACGGTCTACGTCGACGTGGACCCGGCTAACGAGCACGACCCAGT
GTTCACGTCCCCGAGCAGCTCCCCGTTTGCTGTGACGATTGCCGAGAGCG
CGGCGCTGGGAAGTCAGCTCTACACGGTTGTGGCGACGGACCAGGACAGC
GGAACGGACGGACAAATAAAGTTCAGCATCACTTCCGGTGACCTAGGAAA
ATTCAACATCGATGAAACCACCGGTGTAGTGTACGTGGCCGACACCCTGG
ACAAGGAGACCCTGGACACCTACAGTCTGGCCATCCGGGCCACTGACCAG
GGCAGCACCGCAAGGACTGCTGACGTCACACTGGCCGTCACCGTTAGTGA
CGTCAACGACAACGGCCCCGTGTGCTCACCTGACGTCTACACGTCGACGC
TAGCGGAGGACACCAGCGCAGGTACCCTGGTGGCCTGGGTCCTTTGTACG
GACGCCGACATTGACGCCACCAACAACGCCCTCACCTTCAGCATCACTGC
TGGGAACACAGAAGGGAAGTTCGAGGTGAATACTGCTGGAATAGTGACCG
TGGCGACAGGACAGACATTGGACTACGAAACGACCACCAGTTATCTATTG
GACGTGTCCGTTAGTGACGTCAGTGGTGTGGCTGTGACAGCTGAGGTGGC
GGTGGTGGTGACCGGTGTGAATGAATTCCCACCGGCCTTCACGGCGACCA
CCTACTCGGCCACTGTTGTAGAGAACCAGTCCACGGGGACCCTTGTGACG
TCAGTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000190 | genome | Sc0000190:175008..177716 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96643_cuf3 |
| Biotype | protein_coding |
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