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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96641_cuf1 >transcript:BL96641_cuf1-protein ID=transcript:BL96641_cuf1-protein|Name=transcript:BL96641_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=278bp
TLIVCTLTATDADSGDIITYSLSGADSNYYAIDGSNPTGINVAQSLSGQG
GQTHTITVTATDKAGNAGTLTISVIVADTSDNAPICDPSVYFVSIAEDAA
TGTSVATLTCTDADSDPLTYTIISGVNGTTPGPDFVMSTTTIEMMETAVA
LDYDILDSINYQYDVKVEVADGINTVTATVIIQVTGINDNTPAISISPTF
GTVSEDAAIGTTILAASAYTVSDADDGTDGALTYSLSVDNDGASKFDIVA
SNGVVVLIDSLDTETYATYTLTVTVTDG Run BLAST on NCBI mRNA from alignment at Sc0000190:163335..166341+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96641_cuf1 ID=transcript:BL96641_cuf1|Name=transcript:BL96641_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3007bp|location=Sequence derived from alignment at Sc0000190:163335..166341+ (Branchiostoma lanceolatum)
CACACTTATTGTCTGCACACTGACAGCGACTGATGCTGACAGCGGAGACA
TCATAACCTACTCGCTATCAGGTATGAGTTGTTCATTCATTTATTAGATG
TTATTATTGCTTATCTGTTTAGGGTTTTAATGTGCTTGAATGTATGAAAT
ATTTAAGCAAGTTTTTATTGACACATAATGGTTTCAATTCTTTTATTCAT
TGTGAATATCAAAACAAAACAGTGTGAAGATATTGACTTTATTGAAGAAA
AGCCATTAGTGGTGTGCCCTAAGGACTTCATGGACTTCTTATTAACAGTA
AACATAACAATACAAACAGTTACGATGACAACATAACGAACATTCACCCA
TTCGGCATGTACATTAATTACAGGTAGTTGCAGTATATTATATAAATTAC
TGTTTAGTTGTCGTGTTTAGTTGAAATAATTAAGATAATAGGTCAGTGAG
TCTGACTTGAAAGTTCATACTATTTGTTTTGAATTAGAGGCACATCATTA
ATAGAAATGACAAAATATGTGATATTGCTTGTGCGGAAGTTGATGTGTTA
CGCCGAACGAAAATTACGCCGTTTGCACAATCAAGATATGGTCTTTACTT
GTTTAACCTTCTCCCTGCTGCCTAACTCCGTACCTAATAGAAAATGGGGT
GCCAAACCACTACATCAGTGTGCTAAAGGTTAAAGCATCTATCCTAAACT
TCAGGACTTGAAGATGATATATTGTGATTGACCGTTGGCAGCTTTTATCG
TGTATTCAAATTGAACAACTTTTATCTGCTTCTTGAACGTTACAGGAGCC
GACAGCAACTACTACGCCATAGACGGGTCCAACCCTACCGGCATTAACGT
CGCCCAGTCACTGTCCGGCCAGGGCGGTCAGACCCACACAATCACAGTGA
CAGCCACGGACAAGGCCGGAAACGCCGGGACTCTGACCATTTCCGTGATT
GTGGCCGACACCAGCGACAACGCACCCATCTGCGACCCGAGTGTTTACTT
TGTCTCGATAGCAGAGGATGCTGCAACAGGTCCGGCAAAATTGCTGTTTG
TTTGTTTGTTTATTTATTTATATATGTATTTATTTATCTACGTATCTCTA
TTAATTTAGCTGTTTATTATCTATCCAGTTGCCTATCCAAGGTATGAGTC
ATGGCTTCAGGTAAACAATTCACATCATTGGCAATTCACAACATCGTAAG
AAGACGGTCATCATTATGGGACCACGGGCAGGAAGAATAGCCTAATCAAA
TATGTCAAGCTAATTGTGGGTCCACTGAAAGTCAAGTCAAGTCTTAGATA
CTCGTTTTCAGAACTAGCAAATTCAAGCTCCGTCTGTATGCTTATTAATA
AGTGATTAATCGATCGCCACTTTAAAGTGATGACCGAACACCTCAAGCCA
CCACCTCACCATGACTGTGAATCTGTCATATTTTATCTTACCCTTACCTC
CTGAAAAGCGGCCTGTGTGTCGATTTGAGCTTCTCATGAATAAGCAAAGG
TTCAAACATAACCGGGTAACGAGTATCTAGCCCGTACAGATCAAATCCTA
TTCTTTATTGAGATCAAGTTAAGTATACTTACCCGATTCTTTATTCCCTC
TAGGGACGTCAGTAGCGACGTTGACGTGCACGGACGCAGACTCAGACCCC
CTGACGTACACCATCATCAGCGGCGTCAATGGGACGACACCTGGTCCTGA
CTTCGTGATGTCGACAACAACGATTGAAATGATGGAGACCGCCGTTGCCC
TTGACTACGACATCTTGGATTCCATCAACTACCAGTATGACGTCAAGGTT
GAGGTGGCTGATGGAATTAACACTGTCACAGCCACTGTTATCATTCAGGT
GAGATAAAGATGCACACTTTAAAACAAATCGCAAATCTACCTGCCTGATA
GTGCTTCAAGCTTAAAGCTCGTAATAGTCTTTGACAACATACACAATGAA
GTATTTGCGCCGGGTCATATGTCTTTGCAATATAACATTTTCTGTCCTCA
AGAAGTCATTTTCTTAAGTACAGACGTAGACCAAATTACTCATTGTCTAT
AAGCCATGATTACGCTAGTATGTACCTGTAGTCTGAACGTTGCGACTTAT
GTCTCAATTTCACCCAACAGGTTACAGGTATCAACGACAACACACCAGCC
ATTTCTATTTCACCTACCTTCGGTACGGTGTCCGAGGACGCAGCTATCGG
GACCACCATCCTCGCTGCGTCGGCCTACACCGTCAGTGATGCCGACGACG
GGACAGACGGTGCCCTGACGTATTCCCTGTCGGTCGATAGTAAGTGTAAC
ATTACAAGCCCGTACTTATGTAACCTCAAACAGCTCCAAAACTGAAAAGA
CAAAAAAGTACGTCTCGTCAAAGAGCCAGTCAGCCTCAAGGTCTTATGTT
CAGAATCAATATTTGTTTAGACATTAAAACAGAACATGATATGACTTTAT
TTCTTCAGCGCATTGTATCTTGAATTTGAAGTTTATTTACATCTCTACAC
CGTGTTGGCGGCATAGACATCATTTGGGGCGAAGTGGTTTTCTTTTTACG
TATACTTATTTTCTGTGGTGAATCATTTAATGATAGATTTCTCCCACGAT
CCAATTTCAGACGACGGCGCGAGCAAGTTCGACATCGTGGCTTCCAATGG
TGTCGTTGTACTGATCGACTCGCTTGATACAGAGACATACGCCACGTATA
CCCTCACGGTCACGGTAAGAAAGGTTTTACAAATTGGAAGAAAAAAAAAA
AATTAGGATAGTTGTGGACGTGAGTACAAAACGCATCAATGTCGATCTGC
TTGTCTTGTGAGGGGGAACATTGTCATAGACTCTTGTCAATGGTATACGC
TCTGACACAGCCTAGCAGGAAATCGTACGACAAAAATTGACACGGGCCGG
CGTACGTAACCACCCTTCAGATACTAAGGTAAAGCGGACTTTGACTTGGA
TTGTATTTAATTAGAATCTATCGTGTGTTTTTTTCGATCCTAGGTGACGG
ATGGCGG Coding sequence (CDS) from alignment at Sc0000190:163335..166341+ >transcript:BL96641_cuf1 ID=transcript:BL96641_cuf1|Name=transcript:BL96641_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=5004bp|location=Sequence derived from alignment at Sc0000190:163335..166341+ (Branchiostoma lanceolatum)
ACACTTATTGTCTGCACACTGACAGCGACTGATGCTGACAGCGGAGACAT
CATAACCTACTCGCTATCAGGAGCCGACAGCAACTACTACGCCATAGACG
GGTCCAACCCTACCGGCATTAACGTCGCCCAGTCACTGTCCGGCCAGGGC
GGTCAGACCCACACAATCACAGTGACAGCCACGGACAAGGCCGGAAACGC
CGGGACTCTGACCATTTCCGTGATTGTGGCCGACACCAGCGACAACGCAC
CCATCTGCGACCCGAGTGTTTACTTTGTCTCGATAGCAGAGGATGCTGCA
ACAGGGACGTCAGTAGCGACGTTGACGTGCACGGACGCAGACTCAGACCC
CCTGACGTACACCATCATCAGCGGCGTCAATGGGACGACACCTGGTCCTG
ACTTCGTGATGTCGACAACAACGATTGAAATGATGGAGACCGCCGTTGCC
CTTGACTACGACATCTTGGATTCCATCAACTACCAGTATGACGTCAAGGT
TGAGGTGGCTGATGGAATTAACACTGTCACAGCCACTGTTATCATTCAGG
TTACAGGTATCAACGACAACACACCAGCCATTTCTATTTCACCTACCTTC
GGTACGGTGTCCGAGGACGCAGCTATCGGGACCACCATCCTCGCTGCGTC
GGCCTACACCGTCAGTGATGCCGACGACGGGACAGACGGTGCCCTGACGT
ATTCCCTGTCGGTCGATAACGACGGCGCGAGCAAGTTCGACATCGTGGCT
TCCAATGGTGTCGTTGTACTGATCGACTCGCTTGATACAGAGACATACGC
CACGTATACCCTCACGGTCACGGTGACGGATGGCACACTTATTGTCTGCA
CACTGACAGCGACTGATGCTGACAGCGGAGACATCATAACCTACTCGCTA
TCAGGAGCCGACAGCAACTACTACGCCATAGACGGGTCCAACCCTACCGG
CATTAACGTCGCCCAGTCACTGTCCGGCCAGGGCGGTCAGACCCACACAA
TCACAGTGACAGCCACGGACAAGGCCGGAAACGCCGGGACTCTGACCATT
TCCGTGATTGTGGCCGACACCAGCGACAACGCACCCATCTGCGACCCGAG
TGTTTACTTTGTCTCGATAGCAGAGGATGCTGCAACAGGGACGTCAGTAG
CGACGTTGACGTGCACGGACGCAGACTCAGACCCCCTGACGTACACCATC
ATCAGCGGCGTCAATGGGACGACACCTGGTCCTGACTTCGTGATGTCGAC
AACAACGATTGAAATGATGGAGACCGCCGTTGCCCTTGACTACGACATCT
TGGATTCCATCAACTACCAGTATGACGTCAAGGTTGAGGTGGCTGATGGA
ATTAACACTGTCACAGCCACTGTTATCATTCAGGTTACAGGTATCAACGA
CAACACACCAGCCATTTCTATTTCACCTACCTTCGGTACGGTGTCCGAGG
ACGCAGCTATCGGGACCACCATCCTCGCTGCGTCGGCCTACACCGTCAGT
GATGCCGACGACGGGACAGACGGTGCCCTGACGTATTCCCTGTCGGTCGA
TAACGACGGCGCGAGCAAGTTCGACATCGTGGCTTCCAATGGTGTCGTTG
TACTGATCGACTCGCTTGATACAGAGACATACGCCACGTATACCCTCACG
GTCACGGTGACGGATGGCACACTTATTGTCTGCACACTGACAGCGACTGA
TGCTGACAGCGGAGACATCATAACCTACTCGCTATCAGGAGCCGACAGCA
ACTACTACGCCATAGACGGGTCCAACCCTACCGGCATTAACGTCGCCCAG
TCACTGTCCGGCCAGGGCGGTCAGACCCACACAATCACAGTGACAGCCAC
GGACAAGGCCGGAAACGCCGGGACTCTGACCATTTCCGTGATTGTGGCCG
ACACCAGCGACAACGCACCCATCTGCGACCCGAGTGTTTACTTTGTCTCG
ATAGCAGAGGATGCTGCAACAGGGACGTCAGTAGCGACGTTGACGTGCAC
GGACGCAGACTCAGACCCCCTGACGTACACCATCATCAGCGGCGTCAATG
GGACGACACCTGGTCCTGACTTCGTGATGTCGACAACAACGATTGAAATG
ATGGAGACCGCCGTTGCCCTTGACTACGACATCTTGGATTCCATCAACTA
CCAGTATGACGTCAAGGTTGAGGTGGCTGATGGAATTAACACTGTCACAG
CCACTGTTATCATTCAGGTTACAGGTATCAACGACAACACACCAGCCATT
TCTATTTCACCTACCTTCGGTACGGTGTCCGAGGACGCAGCTATCGGGAC
CACCATCCTCGCTGCGTCGGCCTACACCGTCAGTGATGCCGACGACGGGA
CAGACGGTGCCCTGACGTATTCCCTGTCGGTCGATAACGACGGCGCGAGC
AAGTTCGACATCGTGGCTTCCAATGGTGTCGTTGTACTGATCGACTCGCT
TGATACAGAGACATACGCCACGTATACCCTCACGGTCACGGTGACGGATG
GCACACTTATTGTCTGCACACTGACAGCGACTGATGCTGACAGCGGAGAC
ATCATAACCTACTCGCTATCAGGAGCCGACAGCAACTACTACGCCATAGA
CGGGTCCAACCCTACCGGCATTAACGTCGCCCAGTCACTGTCCGGCCAGG
GCGGTCAGACCCACACAATCACAGTGACAGCCACGGACAAGGCCGGAAAC
GCCGGGACTCTGACCATTTCCGTGATTGTGGCCGACACCAGCGACAACGC
ACCCATCTGCGACCCGAGTGTTTACTTTGTCTCGATAGCAGAGGATGCTG
CAACAGGGACGTCAGTAGCGACGTTGACGTGCACGGACGCAGACTCAGAC
CCCCTGACGTACACCATCATCAGCGGCGTCAATGGGACGACACCTGGTCC
TGACTTCGTGATGTCGACAACAACGATTGAAATGATGGAGACCGCCGTTG
CCCTTGACTACGACATCTTGGATTCCATCAACTACCAGTATGACGTCAAG
GTTGAGGTGGCTGATGGAATTAACACTGTCACAGCCACTGTTATCATTCA
GGTTACAGGTATCAACGACAACACACCAGCCATTTCTATTTCACCTACCT
TCGGTACGGTGTCCGAGGACGCAGCTATCGGGACCACCATCCTCGCTGCG
TCGGCCTACACCGTCAGTGATGCCGACGACGGGACAGACGGTGCCCTGAC
GTATTCCCTGTCGGTCGATAACGACGGCGCGAGCAAGTTCGACATCGTGG
CTTCCAATGGTGTCGTTGTACTGATCGACTCGCTTGATACAGAGACATAC
GCCACGTATACCCTCACGGTCACGGTGACGGATGGCACACTTATTGTCTG
CACACTGACAGCGACTGATGCTGACAGCGGAGACATCATAACCTACTCGC
TATCAGGAGCCGACAGCAACTACTACGCCATAGACGGGTCCAACCCTACC
GGCATTAACGTCGCCCAGTCACTGTCCGGCCAGGGCGGTCAGACCCACAC
AATCACAGTGACAGCCACGGACAAGGCCGGAAACGCCGGGACTCTGACCA
TTTCCGTGATTGTGGCCGACACCAGCGACAACGCACCCATCTGCGACCCG
AGTGTTTACTTTGTCTCGATAGCAGAGGATGCTGCAACAGGGACGTCAGT
AGCGACGTTGACGTGCACGGACGCAGACTCAGACCCCCTGACGTACACCA
TCATCAGCGGCGTCAATGGGACGACACCTGGTCCTGACTTCGTGATGTCG
ACAACAACGATTGAAATGATGGAGACCGCCGTTGCCCTTGACTACGACAT
CTTGGATTCCATCAACTACCAGTATGACGTCAAGGTTGAGGTGGCTGATG
GAATTAACACTGTCACAGCCACTGTTATCATTCAGGTTACAGGTATCAAC
GACAACACACCAGCCATTTCTATTTCACCTACCTTCGGTACGGTGTCCGA
GGACGCAGCTATCGGGACCACCATCCTCGCTGCGTCGGCCTACACCGTCA
GTGATGCCGACGACGGGACAGACGGTGCCCTGACGTATTCCCTGTCGGTC
GATAACGACGGCGCGAGCAAGTTCGACATCGTGGCTTCCAATGGTGTCGT
TGTACTGATCGACTCGCTTGATACAGAGACATACGCCACGTATACCCTCA
CGGTCACGGTGACGGATGGCACACTTATTGTCTGCACACTGACAGCGACT
GATGCTGACAGCGGAGACATCATAACCTACTCGCTATCAGGAGCCGACAG
CAACTACTACGCCATAGACGGGTCCAACCCTACCGGCATTAACGTCGCCC
AGTCACTGTCCGGCCAGGGCGGTCAGACCCACACAATCACAGTGACAGCC
ACGGACAAGGCCGGAAACGCCGGGACTCTGACCATTTCCGTGATTGTGGC
CGACACCAGCGACAACGCACCCATCTGCGACCCGAGTGTTTACTTTGTCT
CGATAGCAGAGGATGCTGCAACAGGGACGTCAGTAGCGACGTTGACGTGC
ACGGACGCAGACTCAGACCCCCTGACGTACACCATCATCAGCGGCGTCAA
TGGGACGACACCTGGTCCTGACTTCGTGATGTCGACAACAACGATTGAAA
TGATGGAGACCGCCGTTGCCCTTGACTACGACATCTTGGATTCCATCAAC
TACCAGTATGACGTCAAGGTTGAGGTGGCTGATGGAATTAACACTGTCAC
AGCCACTGTTATCATTCAGGTTACAGGTATCAACGACAACACACCAGCCA
TTTCTATTTCACCTACCTTCGGTACGGTGTCCGAGGACGCAGCTATCGGG
ACCACCATCCTCGCTGCGTCGGCCTACACCGTCAGTGATGCCGACGACGG
GACAGACGGTGCCCTGACGTATTCCCTGTCGGTCGATAACGACGGCGCGA
GCAAGTTCGACATCGTGGCTTCCAATGGTGTCGTTGTACTGATCGACTCG
CTTGATACAGAGACATACGCCACGTATACCCTCACGGTCACGGTGACGGA
TGGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000190 | genome | Sc0000190:163335..166341 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96641_cuf1 |
| Biotype | protein_coding |
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