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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96636_cuf8 >transcript:BL96636_cuf8-protein ID=transcript:BL96636_cuf8-protein|Name=transcript:BL96636_cuf8|organism=Branchiostoma lanceolatum|type=polypeptide|length=221bp
QQGGEQAEQQGGDHEVPEVFRTLDDEIQRLCNVSAASKVKSCDLQLDSNG
QLKAFLLLHDNSMETITVLTNEKKPEASGKSRLLLPGHRSDVRTVAFSSD
NIGMVTGAAETVKLWNRSTQQCIRTMASGYPLDLCTLTLTPFPTGPPSSA
SEPCHQATPCARPSPPETNRSSSGQRQGSCRYLTLVLAVCCNLWMATRGR
CGPLQFLRTREVLCRGVQTSW Run BLAST on NCBI mRNA from alignment at Sc0000486:100465..106753- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96636_cuf8 ID=transcript:BL96636_cuf8|Name=transcript:BL96636_cuf8|organism=Branchiostoma lanceolatum|type=mRNA|length=6289bp|location=Sequence derived from alignment at Sc0000486:100465..106753- (Branchiostoma lanceolatum)
CCAGCAGGGGGGGGAGCAGGCGGAGCAGCAGGGGGGGGACCACGAGGTTC
CGGAGGTGTTCCGGACACTGGACGATGAGATTCAGCGGCTCTGTAACGTC
TCAGCCGCTAGCAAGGTCAAGTCATGTGACCTGCAACTGGACAGCAATGG
ACAGCTGAAGGTCAGAGCCAACAGCCATTTAAGGGAAAAGCAAGACCAGA
TATCATAATTCCTCATTGTTCTTGCTACTATTTGTATTTACACACATGCA
CTGGCTAGCATTTAGTCCTTCTGAATAATTGAACTGGTATTCAGATGTTG
TGATTTTATTTGCACAATTATTATTTCAGTCATTGACTAAAAAGTTTTGC
ACCCAGGCATTCCTACTTCTCCATGACAACTCCATGGAGACCATCACAGT
TCTGACCAATGAGAAGAAGCCTGAGGCGAGCGGGAAGTCGCGTCTGCTTT
TGCCGGGACACCGGAGCGATGTGCGGACCGTGGCCTTCAGCAGCGACAAC
ATCGGCATGGTTACGGGGGCCGCTGAGACAGTCAAACTCTGGAACAGGTC
AAGTAGCCATATTTTTCCATCATTTTAAGTGATGTTTCAGAAATAACAAG
TTTTGCTGTAACGTTGCTATTTCGTCTTGTTTAGAATTGTTTGGGAACAT
CAGATGGTGTAGAATCCTAATCAGGACTCACAAGTACGTTTCCATCCCCC
ACAGGTCCACCCAGCAGTGCATCAGAACCATGCCGTCAGGCTACCCACTC
GACCTTTGCACTCTAGCCCTTACCCCATTCCCCACAGGTCCACCCAGCAG
GGCATCAGAACCATGCCGTCAGGCTACCCACTCGACCTTTGCACTCTAGC
CCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGCATCAGAACCATGCC
GTCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCA
CAGGTCCACCCAGCAGGGTATCAGAACCATGCCATCAGGCTACCCACTCG
ACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGG
GCATCAGAACCATGCCATCAGGCTACCCACTCGACCTTTGCACTCTAGCC
CTTACCCCATTCCCCACAGGTCCACCCAGCAGGGTATCAGAACCATGGCA
TCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCAC
AGGTCCACCCAGCAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGA
CCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGG
TATCAGAACCATGGCATCAGGCTACCCACTCGACCTTTGCACTCTAACCC
TTACCCCATTCCCCACAGGTCCACCCAGCAGGGTATCAGAACCATGGCAT
CAGGCTACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACA
GGTCCACCCAGCAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGAC
CTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGT
ATCAGAACCATGGCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCT
TACCCCATTCCCCACAGGTCCACCCAGCAGGGTATCAGAACCATGGCATC
AGGCTACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAG
GTCCACCCAGCAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGACC
TTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGTA
TCAGAACCATGCCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCTT
ACCCCATTCCCCACAGGTCCACCCAGCAGGGTATCAGAACCATGGCATCA
GGCTACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGG
TCCACCCAGCAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGACCT
TTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGTAT
CAGAACCATGGCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTA
CCCCATTCCCCACAGGTCCACCCAGCAGGGTATCAGAACCATGGCATCAG
GCTACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGT
CCACCCAGCAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGACCTT
TGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGTATC
AGAACCATGGCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTAC
CCCATTCCCCACAGGTCCACCCAGCAGGGTATCAGAACCATGGCATCAGG
CTACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTC
CACCCAGCAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGACCTTT
GCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGTATCA
GAACCATGGCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTACC
CCATTCCCCACAGGTCCACCCAGCAGGGCATCAGAACCATGCCATCAGGC
TACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCC
ACCCAGCAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGACCTTTG
CACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGTATCAG
AACCATGGCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTACCC
CATTCCCCACAGGTCCACCCAGCAGGGTATCAGAACCATGGCATCAGGCT
ACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCA
CCCAGCAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGACCTTTGC
ACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGTATCAGA
ACCATGGCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTACCCC
ATTCCCCACAGGTCCACCCAGCAGGGTATCAGAACCATGGCATCAGGCTA
CCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCAC
CCAGCAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGACCTTTGCA
CTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGTATCAGAA
CCATGGCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTACCCCA
TTCCCCACAGGTCCACCCAGCAGGGTATCAGAACCATGCCATCAGGCTAC
CCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACC
CAGCAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGACCTTTGCAC
TCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGTATCAGAAC
CATGGCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTACCCCAT
TCCCCACAGGTCCACCCAGCAGGGTATCAGAACCATGGCATCAGGCTACC
CACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCC
AGCAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGACCTTTGCACT
CTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGTATCAGAACC
ATGGCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTACCCCATT
CCCCACAGGTCCACCCAGCAGGGTATCAGAACCATGGCATCAGGCTACCC
ACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCA
GCAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGACCTTTGCACTC
TAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGTATCAGAACCA
TGCCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTC
CCCACAGGTCCACCCAGCAGGGTATCAGAACCATGGCATCAGGCTACCCA
CTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAG
CAGGGTATCAGAACCATGGCATCAGGCTACCCACTCGACCTTTGCACTCT
AACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGGGTATCAGAACCAT
GGCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCC
CCACAGGTCCACCCAGCAGTGCATCAGAACCATGGCATCAGGCTACCCAC
TCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGC
AGTGCATCAGAACCATGGCATCAGGCTACCCACTCGACCTTTGCACTCTA
ACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGTGCATCAGAACCATG
CCATCAGGCTACGCCCTGTGCTCGACCTTCGCCCCCGGAGACCAACAGGT
CATCGTCGGGACAAAGGTCAGTCAGAGGTCAAATCAGTCCTTATCAAACA
CTATGACATGTCCTTGGACAATTGGTCAGCTTGAATTCAGATATACTTCA
GGTTTTTAAAAATCTTAAAGATATTTTATTAATTGTAAGCTTTAAGACGT
ATAAGCTTACACTGACATGCCTGAACAACACACGGTTGTTCTGCGTTTGT
TGCTAACGAAACATGATTTTATTTCTCCAGGCAGGGAAGCTGCAGATATT
TGACATTGGTTCTGGCAGTCTGCTGCAATCTGTGGATGGCCACCAGGGGG
CGCTGTGGTCCATTGCAGTTTCTCCGGACAAGGTGAGGAAACGTCTGGCT
GGGAGATCCCTGGAAAAAAGGGAACATGGTTTTCAAGACCCCAGACTCAG
GCCAGAGAGGCCTTATACCTACAGATTGATCTGTCTGGAATTTGCATGCT
TACGTTTTGTATCAATGTTGTACAGGTGCAGCACATACCCAGAGACCATA
TACATTGTATTTCGCATGCTAAATAAAGTAGGGAACTGTAATGCAGGGGC
AAGCCAAATCATTTCCATGTTAACCAGACAAGTTCTTACTCTCAAGTTGC
CATTGTAATCGTACCCTCCAGAGAAGTCTTGTGTCGGGGGGTGCAGGTGG
TTGAATTGTTGTTGTTGTTGTTTACTCCAGAGAAGTCTTGTGTCGGGGGG
TGCAGACAAGCTGGTGAAGTTTTGGGACTTCGAGCTGATCAACGATGAGA
AGTTTTCCTCCACAAGGTGGGTTATTCAACTCCCAGGATATTTTTCATTC
GCTGGCAGAGGTCTTCTTCCTCCCAGTAAAGGGCTGACATAGTTGTGTGT
AAGGGCCACTCTCCTGAGAAAGAGGCGCAAATATTTGTCCTGATGGTCAA
CGATACGTATCTCCCTTCCAGTAAGAGGCTCACGAGTTTGTCTCTATGGA
CCACCGTACAAGTATCGCTCCCAGTTAGCGGCAGATGTATTTTTGTCCTT
ACAGGCCACCTTACATGTATCCCTCCCAGTAAGCGTCTGACATATTTGTC
CTTATGGGCCACCATACATGTCCCCCCCCCCCCCCCCCCCCCCCACCCCC
ACCCCCCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTATTTGTCCTTACGGGCCACCGTACATGTTTCC
CTCCCAGTAAGCGGCTGATGTATTTGTCCTTACGGGCCACCGTACATGTT
TCCCTCCCAGTAAGCGGCTGACTTATTTGTCCTTATGGGCAACCTTACAT
GTTTCCCTCCCAGTAAGCGTCTGACATATTTGTCCTTATGGGCCACCATA
CATGTCCCCCCCTCCCAGTAAGCGGCTGACTTATGTGTCCTTACGGGCCA
CCGTACATGTTTCCCTCCCAGTAAGCGGCTGAGCATCAGCCATGCCCGCT
CCCTGCAGTGTGATGAGGATGTCCTCGGAGTCAAGTATAGCCCGGATCAC
AGGCTCCTCGCTGTGGCCCTCCTGGACAACACAGTCAAAGTCTTCTATGC
AGACACACTGAAGGTAAATATAGCCTGGATCTCAGGCACCTGGACAACAC
AGTCAAAGTCTTCTACGCAGACACACTGAAGGTTAGTATAGCCTAGATCT
CAGGCGCCTGGACAACACAGTCAAAGTCTTCTACGCAGA Coding sequence (CDS) from alignment at Sc0000486:100465..106753- >transcript:BL96636_cuf8 ID=transcript:BL96636_cuf8|Name=transcript:BL96636_cuf8|organism=Branchiostoma lanceolatum|type=CDS|length=3330bp|location=Sequence derived from alignment at Sc0000486:100465..106753- (Branchiostoma lanceolatum)
CAGCAGGGGGGGGAGCAGGCGGAGCAGCAGGGGGGGGACCACGAGGTTCC
GGAGGTGTTCCGGACACTGGACGATGAGATTCAGCGGCTCTGTAACGTCT
CAGCCGCTAGCAAGGTCAAGTCATGTGACCTGCAACTGGACAGCAATGGA
CAGCTGAAGGCATTCCTACTTCTCCATGACAACTCCATGGAGACCATCAC
AGTTCTGACCAATGAGAAGAAGCCTGAGGCGAGCGGGAAGTCGCGTCTGC
TTTTGCCGGGACACCGGAGCGATGTGCGGACCGTGGCCTTCAGCAGCGAC
AACATCGGCATGGTTACGGGGGCCGCTGAGACAGTCAAACTCTGGAACAG
GTCCACCCAGCAGTGCATCAGAACCATGGCATCAGGCTACCCACTCGACC
TTTGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGTGCA
TCAGAACCATGCCATCAGGCTACGCCCTGTGCTCGACCTTCGCCCCCGGA
GACCAACAGGTCATCGTCGGGACAAAGGCAGGGAAGCTGCAGATATTTGA
CATTGGTTCTGGCAGTCTGCTGCAATCTGTGGATGGCCACCAGGGGGCGC
TGTGGTCCATTGCAGTTTCTCCGGACAAGAGAAGTCTTGTGTCGGGGGGT
GCAGACAAGCTGGTGACAGCAGGGGGGGGAGCAGGCGGAGCAGCAGGGGG
GGGACCACGAGGTTCCGGAGGTGTTCCGGACACTGGACGATGAGATTCAG
CGGCTCTGTAACGTCTCAGCCGCTAGCAAGGTCAAGTCATGTGACCTGCA
ACTGGACAGCAATGGACAGCTGAAGGCATTCCTACTTCTCCATGACAACT
CCATGGAGACCATCACAGTTCTGACCAATGAGAAGAAGCCTGAGGCGAGC
GGGAAGTCGCGTCTGCTTTTGCCGGGACACCGGAGCGATGTGCGGACCGT
GGCCTTCAGCAGCGACAACATCGGCATGGTTACGGGGGCCGCTGAGACAG
TCAAACTCTGGAACAGGTCCACCCAGCAGTGCATCAGAACCATGGCATCA
GGCTACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGG
TCCACCCAGCAGTGCATCAGAACCATGCCATCAGGCTACGCCCTGTGCTC
GACCTTCGCCCCCGGAGACCAACAGGTCATCGTCGGGACAAAGGCAGGGA
AGCTGCAGATATTTGACATTGGTTCTGGCAGTCTGCTGCAATCTGTGGAT
GGCCACCAGGGGGCGCTGTGGTCCATTGCAGTTTCTCCGGACAAGAGAAG
TCTTGTGTCGGGGGGTGCAGACAAGCTGGTGACAGCAGGGGGGGGAGCAG
GCGGAGCAGCAGGGGGGGGACCACGAGGTTCCGGAGGTGTTCCGGACACT
GGACGATGAGATTCAGCGGCTCTGTAACGTCTCAGCCGCTAGCAAGGTCA
AGTCATGTGACCTGCAACTGGACAGCAATGGACAGCTGAAGGCATTCCTA
CTTCTCCATGACAACTCCATGGAGACCATCACAGTTCTGACCAATGAGAA
GAAGCCTGAGGCGAGCGGGAAGTCGCGTCTGCTTTTGCCGGGACACCGGA
GCGATGTGCGGACCGTGGCCTTCAGCAGCGACAACATCGGCATGGTTACG
GGGGCCGCTGAGACAGTCAAACTCTGGAACAGGTCCACCCAGCAGTGCAT
CAGAACCATGGCATCAGGCTACCCACTCGACCTTTGCACTCTAACCCTTA
CCCCATTCCCCACAGGTCCACCCAGCAGTGCATCAGAACCATGCCATCAG
GCTACGCCCTGTGCTCGACCTTCGCCCCCGGAGACCAACAGGTCATCGTC
GGGACAAAGGCAGGGAAGCTGCAGATATTTGACATTGGTTCTGGCAGTCT
GCTGCAATCTGTGGATGGCCACCAGGGGGCGCTGTGGTCCATTGCAGTTT
CTCCGGACAAGAGAAGTCTTGTGTCGGGGGGTGCAGACAAGCTGGTGACA
GCAGGGGGGGGAGCAGGCGGAGCAGCAGGGGGGGGACCACGAGGTTCCGG
AGGTGTTCCGGACACTGGACGATGAGATTCAGCGGCTCTGTAACGTCTCA
GCCGCTAGCAAGGTCAAGTCATGTGACCTGCAACTGGACAGCAATGGACA
GCTGAAGGCATTCCTACTTCTCCATGACAACTCCATGGAGACCATCACAG
TTCTGACCAATGAGAAGAAGCCTGAGGCGAGCGGGAAGTCGCGTCTGCTT
TTGCCGGGACACCGGAGCGATGTGCGGACCGTGGCCTTCAGCAGCGACAA
CATCGGCATGGTTACGGGGGCCGCTGAGACAGTCAAACTCTGGAACAGGT
CCACCCAGCAGTGCATCAGAACCATGGCATCAGGCTACCCACTCGACCTT
TGCACTCTAACCCTTACCCCATTCCCCACAGGTCCACCCAGCAGTGCATC
AGAACCATGCCATCAGGCTACGCCCTGTGCTCGACCTTCGCCCCCGGAGA
CCAACAGGTCATCGTCGGGACAAAGGCAGGGAAGCTGCAGATATTTGACA
TTGGTTCTGGCAGTCTGCTGCAATCTGTGGATGGCCACCAGGGGGCGCTG
TGGTCCATTGCAGTTTCTCCGGACAAGAGAAGTCTTGTGTCGGGGGGTGC
AGACAAGCTGGTGACAGCAGGGGGGGGAGCAGGCGGAGCAGCAGGGGGGG
GACCACGAGGTTCCGGAGGTGTTCCGGACACTGGACGATGAGATTCAGCG
GCTCTGTAACGTCTCAGCCGCTAGCAAGGTCAAGTCATGTGACCTGCAAC
TGGACAGCAATGGACAGCTGAAGGCATTCCTACTTCTCCATGACAACTCC
ATGGAGACCATCACAGTTCTGACCAATGAGAAGAAGCCTGAGGCGAGCGG
GAAGTCGCGTCTGCTTTTGCCGGGACACCGGAGCGATGTGCGGACCGTGG
CCTTCAGCAGCGACAACATCGGCATGGTTACGGGGGCCGCTGAGACAGTC
AAACTCTGGAACAGGTCCACCCAGCAGTGCATCAGAACCATGGCATCAGG
CTACCCACTCGACCTTTGCACTCTAACCCTTACCCCATTCCCCACAGGTC
CACCCAGCAGTGCATCAGAACCATGCCATCAGGCTACGCCCTGTGCTCGA
CCTTCGCCCCCGGAGACCAACAGGTCATCGTCGGGACAAAGGCAGGGAAG
CTGCAGATATTTGACATTGGTTCTGGCAGTCTGCTGCAATCTGTGGATGG
CCACCAGGGGGCGCTGTGGTCCATTGCAGTTTCTCCGGACAAGAGAAGTC
TTGTGTCGGGGGGTGCAGACAAGCTGGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000486 | genome | Sc0000486:100465..106753 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96636_cuf8 |
| Biotype | protein_coding |
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