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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96633_cuf6 >transcript:BL96633_cuf6-protein ID=transcript:BL96633_cuf6-protein|Name=transcript:BL96633_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=351bp
MSFMRFAGHVVRGYKTVGFGESLDIIRATFGKIQHPCPADDPRLDITDTT FGDVTVRLYQPKGRHLAPGLLYLHGGGWAFVNLDQAEHFNQYIAIKTGAV VVHVDYRLAPEHKFPAPLKDCLQATEYFLQHADDFNVDSSRIGVLGDSAG GNLAAAVALKLNRPEKKNLPRLKFQSLLYPALQALDFRTDSYKRGDVIDI LTIDMMTFYWCIYLTGSYARHKDFSNNSHVSPELRKRLYTLNGLRLKDNN LGMSLPDDMKDIVNPYFAPLVANDDNLRGLPPTYILTCGYDVLRDDGIMY AKRLESVGVPVTHDHLEGAFHGIAFMGFKPFSYSLGWKSLRKVVNILREN L Run BLAST on NCBI mRNA from alignment at Sc0000541:80709..83467+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96633_cuf6 ID=transcript:BL96633_cuf6|Name=transcript:BL96633_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=2759bp|location=Sequence derived from alignment at Sc0000541:80709..83467+ (Branchiostoma lanceolatum) TAGTAAGCAACCCTATCCCAACACAGGCGATGCTTCCTATCTTAATAATT
ACTTTGTAACAACAACAAAGGTACTAGTAGAAAGTTTTGGCCTTATCTTT
CCCTCAGTTCGGAGTTGTCCTGCCGACATTACAAGTGTTAGGGGTGGCCC
TATCAGCTGTGGCGGTGTGCCTGTGCTACCTGTGCTACTCCCCTGCACCG
CCAGGTGTCGCAGAGCCGTGGAAAACCACCCTAATCATGTCCTTCATGCG
ATTTGCCGGTCACGTGGTGAGTGCATTGCTTGTTATAAAAGAATGTGGCC
CCGCTCTCGTAGGTTGCAAAATGACGGTAAACATATTGAATACGCATCAT
TTTATTACCGCTCACTGTTCTTGGTTCTGATCGACTCTTCTAAATTAGTT
TTTAACGTAACAGTCTGTTCCGCAACGGCTCGTCATCTATTACCCGGCAG
GTTATTGTTTCCTGAGAAAATCCAAATGATGATGATGTCACCATTACAAG
GCTTTATAATTAAGTCTTGTATTCAATGATTAGTACTCGTTAATTTACCC
ACTTATCCGATAGGAAAATGCCGGATGGGCGCTTGAAAAGTCTGAGTTTA
CAAATGTATTTATCCAGTAGTAAAGATTCAATTTTATTCCTCTTTTCCTG
ACCTGGATGTCTAATATTAACAAACGTATCACTTATCCAATGATACCCCA
ATAAGGCTTCCATAATTCACACAGGTTCGTGGTTACAAAACGGTAGGGTT
CGGAGAGAGTCTCGACATCATTCGGGCGACGTTTGGGAAAATACAACACC
CATGTCCAGCTGATGATCCACGCCTGGATATCACGGACACGACGTTTGGT
GACGTCACGGTACGGCTGTATCAACCCAAGGGAAGACATTTGGCCCCCGG
TCTGCTGTACTTGCATGGAGGAGGATGGGCCTTTGTTAACTTGGGTAAGA
ATCCTCACCATTAGCGTCCTTCGCAGACTTCTAGGAGCACCAGCGTTTAT
TTCTGGTGGGAACTCTGATTCACGATTTTCAACATTGGCAAGGTTACATG
TTTTTTGTATGTATCCCCCAGTATAAGAGAACCTTGCCCATGTTGAAAAT
CACGAACCAGTGCTCCCACCAAAAATGAACGCTGTTGCTCCTAGAAGTCT
GCGGAGAAGGCTACATCACCAGTTGGTTGTTGTCTGTTTTGTCACATTTG
GAAAACACATTTAGGAAAACGCTATGTCCAGATGGATAGGTGCATACCTA
TATATATGGCCTCCGTCGGTCAATATTGACCATGGTAAAATCATAGATTA
GCATCAGTGCTATAGCATCGCCTATGGCTAAACAGTCCAATTCGAGAATG
ACAGTCTGTGCCCCATAAGTCACACTTGCGAGCTGACTCAGTTCTATTGC
AAAGCTGTTTTCTACGGATTCGCTTTTCCTCTGCGCTGTGCATCAATACA
AACATATCACAGGCTGTATGCAGAATATTCCTCTTAACATGATTAATTGA
TAGATACCATTGACAACGTAAATGTCACAAACTATCAAACCCCTTATCTG
GCTGTTTTGACAGTAGCTGGTATAGAGGTGCTTTTGCGTATCACAGCAGT
ATGCTTTATGTATATCTATAATGCAACATGCACTATTTTTCAGATCAAGC
TGAACACTTCAACCAGTACATTGCGATCAAGACTGGTGCGGTCGTCGTGC
ACGTCGAGTATGTATTCACCTGTCCAGTTCTTATCAGTGCTTTGATTGTC
CGTCGAGGTATTTTCGATCGGAATTACAACTAATATCATTTTTGAAAATG
ATTTCAAGATGCTAACCTTATATCACATACAACAGAAGTATATCTGACTA
TTTCCAATCTATATCAACAGACCAGTAATCTAATCTAGATTTATTATCAC
ACAACTGCAGGTAGCCGTACATGTAACTGTGATCTCATCATGTTTTGTTT
CTATTTTTCAAGCTATCGACTAGCCCCTGAGCACAAGTTTCCAGCACCGC
TCAAAGACTGCCTCCAGGCCACTGAGTATTTTCTCCAACACGCCGATGAC
TTCAATGTCGATTCTTCCCGAATCGGTGTCCTCGGCGATAGCGCAGGAGG
AAACCTGGCCGCCGCTGTCGCCTTAAAACTCAATCGTCCAGAGAAAAAGA
ACCTTCCACGTCTAAAGTTTCAATCCTTGCTATACCCAGCACTCCAGGCC
TTAGACTTCCGAACGGACTCGTACAAACGTGGCGACGTTATAGACATCTT
AACCATCGACATGATGACTTTTTATTGGTGTATCTATTTAACTGGCAGCT
ATGCCCGCCACAAAGACTTCTCCAATAACAGCCACGTGTCACCCGAGTTG
AGAAAACGTCTCTATACCCTGAATGGTCTCAGATTAAAGGACAATAACCT
GGGCATGAGTTTACCTGATGATATGAAGGACATCGTAAATCCATATTTTG
CCCCACTAGTGGCTAATGATGACAACCTAAGGGGTCTTCCCCCCACGTAC
ATTCTAACGTGTGGGTATGACGTGCTGAGGGATGATGGGATCATGTATGC
CAAGCGGTTAGAATCTGTGGGCGTTCCTGTTACTCATGACCACCTGGAGG
GTGCTTTTCATGGCATCGCCTTCATGGGCTTCAAGCCATTTTCTTACAGC
TTGGGGTGGAAGTCTTTGAGAAAAGTAGTTAACATCCTTCGAGAAAATCT
GTAGGAATACAACACGTAGCTAATATGATGTAAAAGTATGTCAACTCATT
TTTATTAAA Coding sequence (CDS) from alignment at Sc0000541:80709..83467+ >transcript:BL96633_cuf6 ID=transcript:BL96633_cuf6|Name=transcript:BL96633_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=4224bp|location=Sequence derived from alignment at Sc0000541:80709..83467+ (Branchiostoma lanceolatum) ATGTCCTTCATGCGATTTGCCGGTCACGTGGTTCGTGGTTACAAAACGGT AGGGTTCGGAGAGAGTCTCGACATCATTCGGGCGACGTTTGGGAAAATAC AACACCCATGTCCAGCTGATGATCCACGCCTGGATATCACGGACACGACG TTTGGTGACGTCACGGTACGGCTGTATCAACCCAAGGGAAGACATTTGGC CCCCGGTCTGCTGTACTTGCATGGAGGAGGATGGGCCTTTGTTAACTTGG ATCAAGCTGAACACTTCAACCAGTACATTGCGATCAAGACTGGTGCGGTC GTCGTGCACGTCGACTATCGACTAGCCCCTGAGCACAAGTTTCCAGCACC GCTCAAAGACTGCCTCCAGGCCACTGAGTATTTTCTCCAACACGCCGATG ACTTCAATGTCGATTCTTCCCGAATCGGTGTCCTCGGCGATAGCGCAGGA GGAAACCTGGCCGCCGCTGTCGCCTTAAAACTCAATCGTCCAGAGAAAAA GAACCTTCCACGTCTAAAGTTTCAATCCTTGCTATACCCAGCACTCCAGG CCTTAGACTTCCGAACGGACTCGTACAAACGTGGCGACGTTATAGACATC TTAACCATCGACATGATGACTTTTTATTGGTGTATCTATTTAACTGGCAG CTATGCCCGCCACAAAGACTTCTCCAATAACAGCCACGTGTCACCCGAGT TGAGAAAACGTCTCTATACCCTGAATGGTCTCAGATTAAAGGACAATAAC CTGGGCATGAGTTTACCTGATGATATGAAGGACATCGTAAATCCATATTT TGCCCCACTAGTGGCTAATGATGACAACCTAAGGGGTCTTCCCCCCACGT ACATTCTAACGTGTGGGTATGACGTGCTGAGGGATGATGGGATCATGTAT GCCAAGCGGTTAGAATCTGTGGGCGTTCCTGTTACTCATGACCACCTGGA GGGTGCTTTTCATGGCATCGCCTTCATGGGCTTCAAGCCATTTTCTTACA GCTTGGGGTGGAAGTCTTTGAGAAAAGTAGTTAACATCCTTCGAGAAAAT CTGTAGATGTCCTTCATGCGATTTGCCGGTCACGTGGTTCGTGGTTACAA AACGGTAGGGTTCGGAGAGAGTCTCGACATCATTCGGGCGACGTTTGGGA AAATACAACACCCATGTCCAGCTGATGATCCACGCCTGGATATCACGGAC ACGACGTTTGGTGACGTCACGGTACGGCTGTATCAACCCAAGGGAAGACA TTTGGCCCCCGGTCTGCTGTACTTGCATGGAGGAGGATGGGCCTTTGTTA ACTTGGATCAAGCTGAACACTTCAACCAGTACATTGCGATCAAGACTGGT GCGGTCGTCGTGCACGTCGACTATCGACTAGCCCCTGAGCACAAGTTTCC AGCACCGCTCAAAGACTGCCTCCAGGCCACTGAGTATTTTCTCCAACACG CCGATGACTTCAATGTCGATTCTTCCCGAATCGGTGTCCTCGGCGATAGC GCAGGAGGAAACCTGGCCGCCGCTGTCGCCTTAAAACTCAATCGTCCAGA GAAAAAGAACCTTCCACGTCTAAAGTTTCAATCCTTGCTATACCCAGCAC TCCAGGCCTTAGACTTCCGAACGGACTCGTACAAACGTGGCGACGTTATA GACATCTTAACCATCGACATGATGACTTTTTATTGGTGTATCTATTTAAC TGGCAGCTATGCCCGCCACAAAGACTTCTCCAATAACAGCCACGTGTCAC CCGAGTTGAGAAAACGTCTCTATACCCTGAATGGTCTCAGATTAAAGGAC AATAACCTGGGCATGAGTTTACCTGATGATATGAAGGACATCGTAAATCC ATATTTTGCCCCACTAGTGGCTAATGATGACAACCTAAGGGGTCTTCCCC CCACGTACATTCTAACGTGTGGGTATGACGTGCTGAGGGATGATGGGATC ATGTATGCCAAGCGGTTAGAATCTGTGGGCGTTCCTGTTACTCATGACCA CCTGGAGGGTGCTTTTCATGGCATCGCCTTCATGGGCTTCAAGCCATTTT CTTACAGCTTGGGGTGGAAGTCTTTGAGAAAAGTAGTTAACATCCTTCGA GAAAATCTGTAGATGTCCTTCATGCGATTTGCCGGTCACGTGGTTCGTGG TTACAAAACGGTAGGGTTCGGAGAGAGTCTCGACATCATTCGGGCGACGT TTGGGAAAATACAACACCCATGTCCAGCTGATGATCCACGCCTGGATATC ACGGACACGACGTTTGGTGACGTCACGGTACGGCTGTATCAACCCAAGGG AAGACATTTGGCCCCCGGTCTGCTGTACTTGCATGGAGGAGGATGGGCCT TTGTTAACTTGGATCAAGCTGAACACTTCAACCAGTACATTGCGATCAAG ACTGGTGCGGTCGTCGTGCACGTCGACTATCGACTAGCCCCTGAGCACAA GTTTCCAGCACCGCTCAAAGACTGCCTCCAGGCCACTGAGTATTTTCTCC AACACGCCGATGACTTCAATGTCGATTCTTCCCGAATCGGTGTCCTCGGC GATAGCGCAGGAGGAAACCTGGCCGCCGCTGTCGCCTTAAAACTCAATCG TCCAGAGAAAAAGAACCTTCCACGTCTAAAGTTTCAATCCTTGCTATACC CAGCACTCCAGGCCTTAGACTTCCGAACGGACTCGTACAAACGTGGCGAC GTTATAGACATCTTAACCATCGACATGATGACTTTTTATTGGTGTATCTA TTTAACTGGCAGCTATGCCCGCCACAAAGACTTCTCCAATAACAGCCACG TGTCACCCGAGTTGAGAAAACGTCTCTATACCCTGAATGGTCTCAGATTA AAGGACAATAACCTGGGCATGAGTTTACCTGATGATATGAAGGACATCGT AAATCCATATTTTGCCCCACTAGTGGCTAATGATGACAACCTAAGGGGTC TTCCCCCCACGTACATTCTAACGTGTGGGTATGACGTGCTGAGGGATGAT GGGATCATGTATGCCAAGCGGTTAGAATCTGTGGGCGTTCCTGTTACTCA TGACCACCTGGAGGGTGCTTTTCATGGCATCGCCTTCATGGGCTTCAAGC CATTTTCTTACAGCTTGGGGTGGAAGTCTTTGAGAAAAGTAGTTAACATC CTTCGAGAAAATCTGTAGATGTCCTTCATGCGATTTGCCGGTCACGTGGT TCGTGGTTACAAAACGGTAGGGTTCGGAGAGAGTCTCGACATCATTCGGG CGACGTTTGGGAAAATACAACACCCATGTCCAGCTGATGATCCACGCCTG GATATCACGGACACGACGTTTGGTGACGTCACGGTACGGCTGTATCAACC CAAGGGAAGACATTTGGCCCCCGGTCTGCTGTACTTGCATGGAGGAGGAT GGGCCTTTGTTAACTTGGATCAAGCTGAACACTTCAACCAGTACATTGCG ATCAAGACTGGTGCGGTCGTCGTGCACGTCGACTATCGACTAGCCCCTGA GCACAAGTTTCCAGCACCGCTCAAAGACTGCCTCCAGGCCACTGAGTATT TTCTCCAACACGCCGATGACTTCAATGTCGATTCTTCCCGAATCGGTGTC CTCGGCGATAGCGCAGGAGGAAACCTGGCCGCCGCTGTCGCCTTAAAACT CAATCGTCCAGAGAAAAAGAACCTTCCACGTCTAAAGTTTCAATCCTTGC TATACCCAGCACTCCAGGCCTTAGACTTCCGAACGGACTCGTACAAACGT GGCGACGTTATAGACATCTTAACCATCGACATGATGACTTTTTATTGGTG TATCTATTTAACTGGCAGCTATGCCCGCCACAAAGACTTCTCCAATAACA GCCACGTGTCACCCGAGTTGAGAAAACGTCTCTATACCCTGAATGGTCTC AGATTAAAGGACAATAACCTGGGCATGAGTTTACCTGATGATATGAAGGA CATCGTAAATCCATATTTTGCCCCACTAGTGGCTAATGATGACAACCTAA GGGGTCTTCCCCCCACGTACATTCTAACGTGTGGGTATGACGTGCTGAGG GATGATGGGATCATGTATGCCAAGCGGTTAGAATCTGTGGGCGTTCCTGT TACTCATGACCACCTGGAGGGTGCTTTTCATGGCATCGCCTTCATGGGCT TCAAGCCATTTTCTTACAGCTTGGGGTGGAAGTCTTTGAGAAAAGTAGTT AACATCCTTCGAGAAAATCTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000541 | genome | Sc0000541:80709..83467 + |
Properties
Property Name | Value |
Transcript id | BL96633_cuf6 |
Biotype | protein_coding |
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