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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96633_cuf6 >transcript:BL96633_cuf6-protein ID=transcript:BL96633_cuf6-protein|Name=transcript:BL96633_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=351bp
MSFMRFAGHVVRGYKTVGFGESLDIIRATFGKIQHPCPADDPRLDITDTT
FGDVTVRLYQPKGRHLAPGLLYLHGGGWAFVNLDQAEHFNQYIAIKTGAV
VVHVDYRLAPEHKFPAPLKDCLQATEYFLQHADDFNVDSSRIGVLGDSAG
GNLAAAVALKLNRPEKKNLPRLKFQSLLYPALQALDFRTDSYKRGDVIDI
LTIDMMTFYWCIYLTGSYARHKDFSNNSHVSPELRKRLYTLNGLRLKDNN
LGMSLPDDMKDIVNPYFAPLVANDDNLRGLPPTYILTCGYDVLRDDGIMY
AKRLESVGVPVTHDHLEGAFHGIAFMGFKPFSYSLGWKSLRKVVNILREN
L Run BLAST on NCBI mRNA from alignment at Sc0000541:80709..83467+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96633_cuf6 ID=transcript:BL96633_cuf6|Name=transcript:BL96633_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=2759bp|location=Sequence derived from alignment at Sc0000541:80709..83467+ (Branchiostoma lanceolatum)
TAGTAAGCAACCCTATCCCAACACAGGCGATGCTTCCTATCTTAATAATT
ACTTTGTAACAACAACAAAGGTACTAGTAGAAAGTTTTGGCCTTATCTTT
CCCTCAGTTCGGAGTTGTCCTGCCGACATTACAAGTGTTAGGGGTGGCCC
TATCAGCTGTGGCGGTGTGCCTGTGCTACCTGTGCTACTCCCCTGCACCG
CCAGGTGTCGCAGAGCCGTGGAAAACCACCCTAATCATGTCCTTCATGCG
ATTTGCCGGTCACGTGGTGAGTGCATTGCTTGTTATAAAAGAATGTGGCC
CCGCTCTCGTAGGTTGCAAAATGACGGTAAACATATTGAATACGCATCAT
TTTATTACCGCTCACTGTTCTTGGTTCTGATCGACTCTTCTAAATTAGTT
TTTAACGTAACAGTCTGTTCCGCAACGGCTCGTCATCTATTACCCGGCAG
GTTATTGTTTCCTGAGAAAATCCAAATGATGATGATGTCACCATTACAAG
GCTTTATAATTAAGTCTTGTATTCAATGATTAGTACTCGTTAATTTACCC
ACTTATCCGATAGGAAAATGCCGGATGGGCGCTTGAAAAGTCTGAGTTTA
CAAATGTATTTATCCAGTAGTAAAGATTCAATTTTATTCCTCTTTTCCTG
ACCTGGATGTCTAATATTAACAAACGTATCACTTATCCAATGATACCCCA
ATAAGGCTTCCATAATTCACACAGGTTCGTGGTTACAAAACGGTAGGGTT
CGGAGAGAGTCTCGACATCATTCGGGCGACGTTTGGGAAAATACAACACC
CATGTCCAGCTGATGATCCACGCCTGGATATCACGGACACGACGTTTGGT
GACGTCACGGTACGGCTGTATCAACCCAAGGGAAGACATTTGGCCCCCGG
TCTGCTGTACTTGCATGGAGGAGGATGGGCCTTTGTTAACTTGGGTAAGA
ATCCTCACCATTAGCGTCCTTCGCAGACTTCTAGGAGCACCAGCGTTTAT
TTCTGGTGGGAACTCTGATTCACGATTTTCAACATTGGCAAGGTTACATG
TTTTTTGTATGTATCCCCCAGTATAAGAGAACCTTGCCCATGTTGAAAAT
CACGAACCAGTGCTCCCACCAAAAATGAACGCTGTTGCTCCTAGAAGTCT
GCGGAGAAGGCTACATCACCAGTTGGTTGTTGTCTGTTTTGTCACATTTG
GAAAACACATTTAGGAAAACGCTATGTCCAGATGGATAGGTGCATACCTA
TATATATGGCCTCCGTCGGTCAATATTGACCATGGTAAAATCATAGATTA
GCATCAGTGCTATAGCATCGCCTATGGCTAAACAGTCCAATTCGAGAATG
ACAGTCTGTGCCCCATAAGTCACACTTGCGAGCTGACTCAGTTCTATTGC
AAAGCTGTTTTCTACGGATTCGCTTTTCCTCTGCGCTGTGCATCAATACA
AACATATCACAGGCTGTATGCAGAATATTCCTCTTAACATGATTAATTGA
TAGATACCATTGACAACGTAAATGTCACAAACTATCAAACCCCTTATCTG
GCTGTTTTGACAGTAGCTGGTATAGAGGTGCTTTTGCGTATCACAGCAGT
ATGCTTTATGTATATCTATAATGCAACATGCACTATTTTTCAGATCAAGC
TGAACACTTCAACCAGTACATTGCGATCAAGACTGGTGCGGTCGTCGTGC
ACGTCGAGTATGTATTCACCTGTCCAGTTCTTATCAGTGCTTTGATTGTC
CGTCGAGGTATTTTCGATCGGAATTACAACTAATATCATTTTTGAAAATG
ATTTCAAGATGCTAACCTTATATCACATACAACAGAAGTATATCTGACTA
TTTCCAATCTATATCAACAGACCAGTAATCTAATCTAGATTTATTATCAC
ACAACTGCAGGTAGCCGTACATGTAACTGTGATCTCATCATGTTTTGTTT
CTATTTTTCAAGCTATCGACTAGCCCCTGAGCACAAGTTTCCAGCACCGC
TCAAAGACTGCCTCCAGGCCACTGAGTATTTTCTCCAACACGCCGATGAC
TTCAATGTCGATTCTTCCCGAATCGGTGTCCTCGGCGATAGCGCAGGAGG
AAACCTGGCCGCCGCTGTCGCCTTAAAACTCAATCGTCCAGAGAAAAAGA
ACCTTCCACGTCTAAAGTTTCAATCCTTGCTATACCCAGCACTCCAGGCC
TTAGACTTCCGAACGGACTCGTACAAACGTGGCGACGTTATAGACATCTT
AACCATCGACATGATGACTTTTTATTGGTGTATCTATTTAACTGGCAGCT
ATGCCCGCCACAAAGACTTCTCCAATAACAGCCACGTGTCACCCGAGTTG
AGAAAACGTCTCTATACCCTGAATGGTCTCAGATTAAAGGACAATAACCT
GGGCATGAGTTTACCTGATGATATGAAGGACATCGTAAATCCATATTTTG
CCCCACTAGTGGCTAATGATGACAACCTAAGGGGTCTTCCCCCCACGTAC
ATTCTAACGTGTGGGTATGACGTGCTGAGGGATGATGGGATCATGTATGC
CAAGCGGTTAGAATCTGTGGGCGTTCCTGTTACTCATGACCACCTGGAGG
GTGCTTTTCATGGCATCGCCTTCATGGGCTTCAAGCCATTTTCTTACAGC
TTGGGGTGGAAGTCTTTGAGAAAAGTAGTTAACATCCTTCGAGAAAATCT
GTAGGAATACAACACGTAGCTAATATGATGTAAAAGTATGTCAACTCATT
TTTATTAAA Coding sequence (CDS) from alignment at Sc0000541:80709..83467+ >transcript:BL96633_cuf6 ID=transcript:BL96633_cuf6|Name=transcript:BL96633_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=4224bp|location=Sequence derived from alignment at Sc0000541:80709..83467+ (Branchiostoma lanceolatum)
ATGTCCTTCATGCGATTTGCCGGTCACGTGGTTCGTGGTTACAAAACGGT
AGGGTTCGGAGAGAGTCTCGACATCATTCGGGCGACGTTTGGGAAAATAC
AACACCCATGTCCAGCTGATGATCCACGCCTGGATATCACGGACACGACG
TTTGGTGACGTCACGGTACGGCTGTATCAACCCAAGGGAAGACATTTGGC
CCCCGGTCTGCTGTACTTGCATGGAGGAGGATGGGCCTTTGTTAACTTGG
ATCAAGCTGAACACTTCAACCAGTACATTGCGATCAAGACTGGTGCGGTC
GTCGTGCACGTCGACTATCGACTAGCCCCTGAGCACAAGTTTCCAGCACC
GCTCAAAGACTGCCTCCAGGCCACTGAGTATTTTCTCCAACACGCCGATG
ACTTCAATGTCGATTCTTCCCGAATCGGTGTCCTCGGCGATAGCGCAGGA
GGAAACCTGGCCGCCGCTGTCGCCTTAAAACTCAATCGTCCAGAGAAAAA
GAACCTTCCACGTCTAAAGTTTCAATCCTTGCTATACCCAGCACTCCAGG
CCTTAGACTTCCGAACGGACTCGTACAAACGTGGCGACGTTATAGACATC
TTAACCATCGACATGATGACTTTTTATTGGTGTATCTATTTAACTGGCAG
CTATGCCCGCCACAAAGACTTCTCCAATAACAGCCACGTGTCACCCGAGT
TGAGAAAACGTCTCTATACCCTGAATGGTCTCAGATTAAAGGACAATAAC
CTGGGCATGAGTTTACCTGATGATATGAAGGACATCGTAAATCCATATTT
TGCCCCACTAGTGGCTAATGATGACAACCTAAGGGGTCTTCCCCCCACGT
ACATTCTAACGTGTGGGTATGACGTGCTGAGGGATGATGGGATCATGTAT
GCCAAGCGGTTAGAATCTGTGGGCGTTCCTGTTACTCATGACCACCTGGA
GGGTGCTTTTCATGGCATCGCCTTCATGGGCTTCAAGCCATTTTCTTACA
GCTTGGGGTGGAAGTCTTTGAGAAAAGTAGTTAACATCCTTCGAGAAAAT
CTGTAGATGTCCTTCATGCGATTTGCCGGTCACGTGGTTCGTGGTTACAA
AACGGTAGGGTTCGGAGAGAGTCTCGACATCATTCGGGCGACGTTTGGGA
AAATACAACACCCATGTCCAGCTGATGATCCACGCCTGGATATCACGGAC
ACGACGTTTGGTGACGTCACGGTACGGCTGTATCAACCCAAGGGAAGACA
TTTGGCCCCCGGTCTGCTGTACTTGCATGGAGGAGGATGGGCCTTTGTTA
ACTTGGATCAAGCTGAACACTTCAACCAGTACATTGCGATCAAGACTGGT
GCGGTCGTCGTGCACGTCGACTATCGACTAGCCCCTGAGCACAAGTTTCC
AGCACCGCTCAAAGACTGCCTCCAGGCCACTGAGTATTTTCTCCAACACG
CCGATGACTTCAATGTCGATTCTTCCCGAATCGGTGTCCTCGGCGATAGC
GCAGGAGGAAACCTGGCCGCCGCTGTCGCCTTAAAACTCAATCGTCCAGA
GAAAAAGAACCTTCCACGTCTAAAGTTTCAATCCTTGCTATACCCAGCAC
TCCAGGCCTTAGACTTCCGAACGGACTCGTACAAACGTGGCGACGTTATA
GACATCTTAACCATCGACATGATGACTTTTTATTGGTGTATCTATTTAAC
TGGCAGCTATGCCCGCCACAAAGACTTCTCCAATAACAGCCACGTGTCAC
CCGAGTTGAGAAAACGTCTCTATACCCTGAATGGTCTCAGATTAAAGGAC
AATAACCTGGGCATGAGTTTACCTGATGATATGAAGGACATCGTAAATCC
ATATTTTGCCCCACTAGTGGCTAATGATGACAACCTAAGGGGTCTTCCCC
CCACGTACATTCTAACGTGTGGGTATGACGTGCTGAGGGATGATGGGATC
ATGTATGCCAAGCGGTTAGAATCTGTGGGCGTTCCTGTTACTCATGACCA
CCTGGAGGGTGCTTTTCATGGCATCGCCTTCATGGGCTTCAAGCCATTTT
CTTACAGCTTGGGGTGGAAGTCTTTGAGAAAAGTAGTTAACATCCTTCGA
GAAAATCTGTAGATGTCCTTCATGCGATTTGCCGGTCACGTGGTTCGTGG
TTACAAAACGGTAGGGTTCGGAGAGAGTCTCGACATCATTCGGGCGACGT
TTGGGAAAATACAACACCCATGTCCAGCTGATGATCCACGCCTGGATATC
ACGGACACGACGTTTGGTGACGTCACGGTACGGCTGTATCAACCCAAGGG
AAGACATTTGGCCCCCGGTCTGCTGTACTTGCATGGAGGAGGATGGGCCT
TTGTTAACTTGGATCAAGCTGAACACTTCAACCAGTACATTGCGATCAAG
ACTGGTGCGGTCGTCGTGCACGTCGACTATCGACTAGCCCCTGAGCACAA
GTTTCCAGCACCGCTCAAAGACTGCCTCCAGGCCACTGAGTATTTTCTCC
AACACGCCGATGACTTCAATGTCGATTCTTCCCGAATCGGTGTCCTCGGC
GATAGCGCAGGAGGAAACCTGGCCGCCGCTGTCGCCTTAAAACTCAATCG
TCCAGAGAAAAAGAACCTTCCACGTCTAAAGTTTCAATCCTTGCTATACC
CAGCACTCCAGGCCTTAGACTTCCGAACGGACTCGTACAAACGTGGCGAC
GTTATAGACATCTTAACCATCGACATGATGACTTTTTATTGGTGTATCTA
TTTAACTGGCAGCTATGCCCGCCACAAAGACTTCTCCAATAACAGCCACG
TGTCACCCGAGTTGAGAAAACGTCTCTATACCCTGAATGGTCTCAGATTA
AAGGACAATAACCTGGGCATGAGTTTACCTGATGATATGAAGGACATCGT
AAATCCATATTTTGCCCCACTAGTGGCTAATGATGACAACCTAAGGGGTC
TTCCCCCCACGTACATTCTAACGTGTGGGTATGACGTGCTGAGGGATGAT
GGGATCATGTATGCCAAGCGGTTAGAATCTGTGGGCGTTCCTGTTACTCA
TGACCACCTGGAGGGTGCTTTTCATGGCATCGCCTTCATGGGCTTCAAGC
CATTTTCTTACAGCTTGGGGTGGAAGTCTTTGAGAAAAGTAGTTAACATC
CTTCGAGAAAATCTGTAGATGTCCTTCATGCGATTTGCCGGTCACGTGGT
TCGTGGTTACAAAACGGTAGGGTTCGGAGAGAGTCTCGACATCATTCGGG
CGACGTTTGGGAAAATACAACACCCATGTCCAGCTGATGATCCACGCCTG
GATATCACGGACACGACGTTTGGTGACGTCACGGTACGGCTGTATCAACC
CAAGGGAAGACATTTGGCCCCCGGTCTGCTGTACTTGCATGGAGGAGGAT
GGGCCTTTGTTAACTTGGATCAAGCTGAACACTTCAACCAGTACATTGCG
ATCAAGACTGGTGCGGTCGTCGTGCACGTCGACTATCGACTAGCCCCTGA
GCACAAGTTTCCAGCACCGCTCAAAGACTGCCTCCAGGCCACTGAGTATT
TTCTCCAACACGCCGATGACTTCAATGTCGATTCTTCCCGAATCGGTGTC
CTCGGCGATAGCGCAGGAGGAAACCTGGCCGCCGCTGTCGCCTTAAAACT
CAATCGTCCAGAGAAAAAGAACCTTCCACGTCTAAAGTTTCAATCCTTGC
TATACCCAGCACTCCAGGCCTTAGACTTCCGAACGGACTCGTACAAACGT
GGCGACGTTATAGACATCTTAACCATCGACATGATGACTTTTTATTGGTG
TATCTATTTAACTGGCAGCTATGCCCGCCACAAAGACTTCTCCAATAACA
GCCACGTGTCACCCGAGTTGAGAAAACGTCTCTATACCCTGAATGGTCTC
AGATTAAAGGACAATAACCTGGGCATGAGTTTACCTGATGATATGAAGGA
CATCGTAAATCCATATTTTGCCCCACTAGTGGCTAATGATGACAACCTAA
GGGGTCTTCCCCCCACGTACATTCTAACGTGTGGGTATGACGTGCTGAGG
GATGATGGGATCATGTATGCCAAGCGGTTAGAATCTGTGGGCGTTCCTGT
TACTCATGACCACCTGGAGGGTGCTTTTCATGGCATCGCCTTCATGGGCT
TCAAGCCATTTTCTTACAGCTTGGGGTGGAAGTCTTTGAGAAAAGTAGTT
AACATCCTTCGAGAAAATCTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000541 | genome | Sc0000541:80709..83467 + |
Properties
| Property Name | Value |
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| Transcript id | BL96633_cuf6 |
| Biotype | protein_coding |
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