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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96630_cuf6 >transcript:BL96630_cuf6-protein ID=transcript:BL96630_cuf6-protein|Name=transcript:BL96630_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=249bp
NGTYCEAIAANYISFKLLDLDPNVDYSDPTSPGYQLLQEQVEDLVRNISD
AVLSAEVLEVRLPDGAVILQVNTTVTQVDRVREDVLDTTADGTLGDLPVD
GNVTTFGDISLLVALPDCSSDSTNNCSSDAICKEEYFYFSCDCKTGFTGD
GVSCQDIDECSLGLDDCHSNADCTNTEGSYTCTCSTGYTGNGTFCTAVTE
TTTTMQPTVTGTIDGGWSEWSVWSNCSASCGLGTRERTRQCDSPPPQDG Run BLAST on NCBI mRNA from alignment at Sc0000391:52191..55021- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96630_cuf6 ID=transcript:BL96630_cuf6|Name=transcript:BL96630_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=2831bp|location=Sequence derived from alignment at Sc0000391:52191..55021- (Branchiostoma lanceolatum)
AATGGAACATATTGTGAAGGTTGGTTCTTCAATGTCCTGCTCAAAATACT
GTGTGCAAAATGCACTTTTGTTCAACCGTAAGGTTATATACTCAGTCACC
GTTGAAAGATACAGTTCAAGCTTGTTCCAGAAAGGCAGTGGATGCTACCT
GAAACATCTGACCTGGTCCAAAATCTCTCTAGTTGTTTGAATAACTGCTA
TCTTACATGTGTTGTTACCTGGATGTCTAACCTTCATCAAAGCCCATTAA
ATAACTTGGATCTGTCCCTCCTCCCAGCCATTGCTGCCAACTACATCTCC
TTCAAGCTGCTAGACTTGGACCCCAACGTCGACTACTCAGACCCAACCTC
CCCTGGGTACCAACTGCTGCAGGAGCAGGTAGAAGACTTGGTAGGTGTAC
TCTTGTTTTTTTGTAATCTGTACTAAACTTGCTTGCTATTGCACTTGTTA
TACATATTTGAAGCAGGCACAGTCTTTTAGAATTCTTCAATCCATTATTC
CTCCAGTAACTTGTTTTTGTTCAAGTACAATGTCCTTGCATATAGTTGAA
AGAATGACATTCAGAATGAAAGTCTCCCTAGATTTTACAACAGCCTTGAA
TTAGTAGATCCTTTTCAAGAATTCTTTCAATGTAACAGAAATGCACTGAA
CACAAATGCACAAAGAAAAAAACAAAATAGACTTATCATGGATACACATA
TCAGTAATTTGAAGCTGTTACTCTTTTAAATTTATAAATCATATATATAT
ATATTATATATATCATTATGTTATCAAGTTTTTTTGATAAACATGTAGGC
TTGAAACCAAATGTTAGAGACCACTCCATCATTCAATTCAAGTGCTTAAG
GCTTTTTCAAGGTTCTTTCTAATGAAAACAAAGGATAAATGAAAACATCT
TTATCCAACAGGTGAGGAACATCTCAGACGCTGTGCTGTCAGCTGAGGTG
CTGGAGGTAAGGTTACCTGACGGCGCAGTCATCCTGCAGGTGAACACGAC
TGTCACACAGGTGGACAGGGTCAGGGAGGACGTCCTGGACACTACAGCAG
ACGGGACACTGGGAGATCTACCTGTGGACGGCAATGTCACTACTTTTGGA
GACATATGTAATTAGATCTTTACCTTTTCTGTGAAAATGTTGTAATCACC
ATAGGTCATTTTCCAAGGTCAAAGTTCTTAATTTTCTAACTAGCTAGTTA
CTAATTGTTCTTTGAGACTGAGGAACAAAGTCTTTGATCCTGTGAATTGT
GAAATATTCTTGTTGGTTTTATTTTCACATTTTTTTCCAGTGCTGCTCCA
AGGCGGAAAAGACCTGATTAACACAATGTATGATAGGGAATATTGGAAGC
TGTACTTTTATACTCTTCAACTCCTTGATAAGAAATAAGAAAACAATGAT
GATGATTCACAATCTTTCTTGATCTCCCGCTGTTTTTCTAAACAGCTCTC
CTGGTGGCTCTACCAGACTGCAGCTCAGACAGCACCAATAACTGCAGTTC
CGATGCAATCTGCAAGGAGGAGTACTTTTACTTCAGCTGTGATTGTAAGA
CAGGATTTACAGGGGATGGTGTCAGTTGTCAAGGTAAAGTTTTCATCATC
TTATTTGATTCATACATTCAAGCAAAATACATAGAACTGGTGGCCCTATA
GGTCTAGATGGGATGATACATATAATATGATGTTCATTATGATTTCATAA
TAAGCAGTGATGGTGACTGGGTTCAACTCCAGCTTGTTTAGAATACATTG
TATTTAGGCTGTATTTTCGGGAACGCTGGCAAAAAAAGTGCTAGATTGAT
GCTAGATTGGTGCTGGATCATTACTATGGAATTACCCAGTTGTATCCATT
ATGACTGTTTCCTAACTCCAACACGTGCTTTGTTGTATCCACAGATATAG
ATGAGTGTTCGCTGGGTTTGGATGACTGTCACAGTAATGCTGACTGTACA
AACACTGAAGGTTCCTACACATGCACATGTTCAACTGGATACACTGGAAA
TGGAACATTCTGTACAGGTAATCAAATGCATTATCAAACAGTATTCTATA
CTGGTCTCTGGAAAGGCTAATTGCTAAGAATGTATTCTGTCATAGATATA
TGTTGTATTACTATTAAGAAGCCTTTATTACTGTTGTTAAATGTTTAAAG
TTACAAGTTAAGACTAGCAGGCTTTAAGATATGCATGTCTTGAAAAATGT
GAAAATTCATCATATTTTTGTATCAGATTCCTTGCTTGATGATTGTTGTG
TTTACTTCTTATGTACTCAACAGTCTAAAGATAATCAATGGTTGTATCAT
CCATTCACAGCTGTAACAGAAACAACCACAACCATGCAACCAACAGTAAC
TGGTACCATAGGTAAGCCTGTCAATTATAAGATATCTATGAAACAAACAG
ACAAATAGAGGCTAGCAACATTGCTCTATTCCCATGCTTCAGAGATAGCA
GCTCTTTAAATGGAACCTATCAAAGTATTAATCATTATAGGCATCAAAGC
TATTGCTGTATAATAGGATGATACAAAAAAAGGACAATGTCCAATATTTT
ACCCCAAAAAAATTAATTTTGTACTTTTTTCAGACTTACATAATTTTTAT
GTAGAAATGATTAGTAATTAAAGGATCTTTGTAAATTACAAAGAAACGAA
AACTGAATTCTTCCATGATTTTTTCATGTCGTCATAATTATGCAAGTTTG
TTAATTTCTAAACTGTCCTACCAGATGGCGGTTGGAGTGAGTGGAGTGTC
TGGTCCAACTGTTCTGCTAGCTGTGGGTTAGGCACACGGGAGAGAACACG
GCAGTGTGACAGCCCCCCTCCCCAAGATGGC Coding sequence (CDS) from alignment at Sc0000391:52191..55021- >transcript:BL96630_cuf6 ID=transcript:BL96630_cuf6|Name=transcript:BL96630_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=5229bp|location=Sequence derived from alignment at Sc0000391:52191..55021- (Branchiostoma lanceolatum)
AATGGAACATATTGTGAAGCCATTGCTGCCAACTACATCTCCTTCAAGCT
GCTAGACTTGGACCCCAACGTCGACTACTCAGACCCAACCTCCCCTGGGT
ACCAACTGCTGCAGGAGCAGGTAGAAGACTTGGTGAGGAACATCTCAGAC
GCTGTGCTGTCAGCTGAGGTGCTGGAGGTAAGGTTACCTGACGGCGCAGT
CATCCTGCAGGTGAACACGACTGTCACACAGGTGGACAGGGTCAGGGAGG
ACGTCCTGGACACTACAGCAGACGGGACACTGGGAGATCTACCTGTGGAC
GGCAATGTCACTACTTTTGGAGACATATCTCTCCTGGTGGCTCTACCAGA
CTGCAGCTCAGACAGCACCAATAACTGCAGTTCCGATGCAATCTGCAAGG
AGGAGTACTTTTACTTCAGCTGTGATTGTAAGACAGGATTTACAGGGGAT
GGTGTCAGTTGTCAAGATATAGATGAGTGTTCGCTGGGTTTGGATGACTG
TCACAGTAATGCTGACTGTACAAACACTGAAGGTTCCTACACATGCACAT
GTTCAACTGGATACACTGGAAATGGAACATTCTGTACAGCTGTAACAGAA
ACAACCACAACCATGCAACCAACAGTAACTGGTACCATAGATGGCGGTTG
GAGTGAGTGGAGTGTCTGGTCCAACTGTTCTGCTAGCTGTGGGTTAGGCA
CACGGGAGAGAACACGGCAGTGTGACAGCCCCCCTCCCCAAGATGGCAAT
GGAACATATTGTGAAGCCATTGCTGCCAACTACATCTCCTTCAAGCTGCT
AGACTTGGACCCCAACGTCGACTACTCAGACCCAACCTCCCCTGGGTACC
AACTGCTGCAGGAGCAGGTAGAAGACTTGGTGAGGAACATCTCAGACGCT
GTGCTGTCAGCTGAGGTGCTGGAGGTAAGGTTACCTGACGGCGCAGTCAT
CCTGCAGGTGAACACGACTGTCACACAGGTGGACAGGGTCAGGGAGGACG
TCCTGGACACTACAGCAGACGGGACACTGGGAGATCTACCTGTGGACGGC
AATGTCACTACTTTTGGAGACATATCTCTCCTGGTGGCTCTACCAGACTG
CAGCTCAGACAGCACCAATAACTGCAGTTCCGATGCAATCTGCAAGGAGG
AGTACTTTTACTTCAGCTGTGATTGTAAGACAGGATTTACAGGGGATGGT
GTCAGTTGTCAAGATATAGATGAGTGTTCGCTGGGTTTGGATGACTGTCA
CAGTAATGCTGACTGTACAAACACTGAAGGTTCCTACACATGCACATGTT
CAACTGGATACACTGGAAATGGAACATTCTGTACAGCTGTAACAGAAACA
ACCACAACCATGCAACCAACAGTAACTGGTACCATAGATGGCGGTTGGAG
TGAGTGGAGTGTCTGGTCCAACTGTTCTGCTAGCTGTGGGTTAGGCACAC
GGGAGAGAACACGGCAGTGTGACAGCCCCCCTCCCCAAGATGGCAATGGA
ACATATTGTGAAGCCATTGCTGCCAACTACATCTCCTTCAAGCTGCTAGA
CTTGGACCCCAACGTCGACTACTCAGACCCAACCTCCCCTGGGTACCAAC
TGCTGCAGGAGCAGGTAGAAGACTTGGTGAGGAACATCTCAGACGCTGTG
CTGTCAGCTGAGGTGCTGGAGGTAAGGTTACCTGACGGCGCAGTCATCCT
GCAGGTGAACACGACTGTCACACAGGTGGACAGGGTCAGGGAGGACGTCC
TGGACACTACAGCAGACGGGACACTGGGAGATCTACCTGTGGACGGCAAT
GTCACTACTTTTGGAGACATATCTCTCCTGGTGGCTCTACCAGACTGCAG
CTCAGACAGCACCAATAACTGCAGTTCCGATGCAATCTGCAAGGAGGAGT
ACTTTTACTTCAGCTGTGATTGTAAGACAGGATTTACAGGGGATGGTGTC
AGTTGTCAAGATATAGATGAGTGTTCGCTGGGTTTGGATGACTGTCACAG
TAATGCTGACTGTACAAACACTGAAGGTTCCTACACATGCACATGTTCAA
CTGGATACACTGGAAATGGAACATTCTGTACAGCTGTAACAGAAACAACC
ACAACCATGCAACCAACAGTAACTGGTACCATAGATGGCGGTTGGAGTGA
GTGGAGTGTCTGGTCCAACTGTTCTGCTAGCTGTGGGTTAGGCACACGGG
AGAGAACACGGCAGTGTGACAGCCCCCCTCCCCAAGATGGCAATGGAACA
TATTGTGAAGCCATTGCTGCCAACTACATCTCCTTCAAGCTGCTAGACTT
GGACCCCAACGTCGACTACTCAGACCCAACCTCCCCTGGGTACCAACTGC
TGCAGGAGCAGGTAGAAGACTTGGTGAGGAACATCTCAGACGCTGTGCTG
TCAGCTGAGGTGCTGGAGGTAAGGTTACCTGACGGCGCAGTCATCCTGCA
GGTGAACACGACTGTCACACAGGTGGACAGGGTCAGGGAGGACGTCCTGG
ACACTACAGCAGACGGGACACTGGGAGATCTACCTGTGGACGGCAATGTC
ACTACTTTTGGAGACATATCTCTCCTGGTGGCTCTACCAGACTGCAGCTC
AGACAGCACCAATAACTGCAGTTCCGATGCAATCTGCAAGGAGGAGTACT
TTTACTTCAGCTGTGATTGTAAGACAGGATTTACAGGGGATGGTGTCAGT
TGTCAAGATATAGATGAGTGTTCGCTGGGTTTGGATGACTGTCACAGTAA
TGCTGACTGTACAAACACTGAAGGTTCCTACACATGCACATGTTCAACTG
GATACACTGGAAATGGAACATTCTGTACAGCTGTAACAGAAACAACCACA
ACCATGCAACCAACAGTAACTGGTACCATAGATGGCGGTTGGAGTGAGTG
GAGTGTCTGGTCCAACTGTTCTGCTAGCTGTGGGTTAGGCACACGGGAGA
GAACACGGCAGTGTGACAGCCCCCCTCCCCAAGATGGCAATGGAACATAT
TGTGAAGCCATTGCTGCCAACTACATCTCCTTCAAGCTGCTAGACTTGGA
CCCCAACGTCGACTACTCAGACCCAACCTCCCCTGGGTACCAACTGCTGC
AGGAGCAGGTAGAAGACTTGGTGAGGAACATCTCAGACGCTGTGCTGTCA
GCTGAGGTGCTGGAGGTAAGGTTACCTGACGGCGCAGTCATCCTGCAGGT
GAACACGACTGTCACACAGGTGGACAGGGTCAGGGAGGACGTCCTGGACA
CTACAGCAGACGGGACACTGGGAGATCTACCTGTGGACGGCAATGTCACT
ACTTTTGGAGACATATCTCTCCTGGTGGCTCTACCAGACTGCAGCTCAGA
CAGCACCAATAACTGCAGTTCCGATGCAATCTGCAAGGAGGAGTACTTTT
ACTTCAGCTGTGATTGTAAGACAGGATTTACAGGGGATGGTGTCAGTTGT
CAAGATATAGATGAGTGTTCGCTGGGTTTGGATGACTGTCACAGTAATGC
TGACTGTACAAACACTGAAGGTTCCTACACATGCACATGTTCAACTGGAT
ACACTGGAAATGGAACATTCTGTACAGCTGTAACAGAAACAACCACAACC
ATGCAACCAACAGTAACTGGTACCATAGATGGCGGTTGGAGTGAGTGGAG
TGTCTGGTCCAACTGTTCTGCTAGCTGTGGGTTAGGCACACGGGAGAGAA
CACGGCAGTGTGACAGCCCCCCTCCCCAAGATGGCAATGGAACATATTGT
GAAGCCATTGCTGCCAACTACATCTCCTTCAAGCTGCTAGACTTGGACCC
CAACGTCGACTACTCAGACCCAACCTCCCCTGGGTACCAACTGCTGCAGG
AGCAGGTAGAAGACTTGGTGAGGAACATCTCAGACGCTGTGCTGTCAGCT
GAGGTGCTGGAGGTAAGGTTACCTGACGGCGCAGTCATCCTGCAGGTGAA
CACGACTGTCACACAGGTGGACAGGGTCAGGGAGGACGTCCTGGACACTA
CAGCAGACGGGACACTGGGAGATCTACCTGTGGACGGCAATGTCACTACT
TTTGGAGACATATCTCTCCTGGTGGCTCTACCAGACTGCAGCTCAGACAG
CACCAATAACTGCAGTTCCGATGCAATCTGCAAGGAGGAGTACTTTTACT
TCAGCTGTGATTGTAAGACAGGATTTACAGGGGATGGTGTCAGTTGTCAA
GATATAGATGAGTGTTCGCTGGGTTTGGATGACTGTCACAGTAATGCTGA
CTGTACAAACACTGAAGGTTCCTACACATGCACATGTTCAACTGGATACA
CTGGAAATGGAACATTCTGTACAGCTGTAACAGAAACAACCACAACCATG
CAACCAACAGTAACTGGTACCATAGATGGCGGTTGGAGTGAGTGGAGTGT
CTGGTCCAACTGTTCTGCTAGCTGTGGGTTAGGCACACGGGAGAGAACAC
GGCAGTGTGACAGCCCCCCTCCCCAAGATGGCAATGGAACATATTGTGAA
GCCATTGCTGCCAACTACATCTCCTTCAAGCTGCTAGACTTGGACCCCAA
CGTCGACTACTCAGACCCAACCTCCCCTGGGTACCAACTGCTGCAGGAGC
AGGTAGAAGACTTGGTGAGGAACATCTCAGACGCTGTGCTGTCAGCTGAG
GTGCTGGAGGTAAGGTTACCTGACGGCGCAGTCATCCTGCAGGTGAACAC
GACTGTCACACAGGTGGACAGGGTCAGGGAGGACGTCCTGGACACTACAG
CAGACGGGACACTGGGAGATCTACCTGTGGACGGCAATGTCACTACTTTT
GGAGACATATCTCTCCTGGTGGCTCTACCAGACTGCAGCTCAGACAGCAC
CAATAACTGCAGTTCCGATGCAATCTGCAAGGAGGAGTACTTTTACTTCA
GCTGTGATTGTAAGACAGGATTTACAGGGGATGGTGTCAGTTGTCAAGAT
ATAGATGAGTGTTCGCTGGGTTTGGATGACTGTCACAGTAATGCTGACTG
TACAAACACTGAAGGTTCCTACACATGCACATGTTCAACTGGATACACTG
GAAATGGAACATTCTGTACAGCTGTAACAGAAACAACCACAACCATGCAA
CCAACAGTAACTGGTACCATAGATGGCGGTTGGAGTGAGTGGAGTGTCTG
GTCCAACTGTTCTGCTAGCTGTGGGTTAGGCACACGGGAGAGAACACGGC
AGTGTGACAGCCCCCCTCCCCAAGATGGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000391 | genome | Sc0000391:52191..55021 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96630_cuf6 |
| Biotype | protein_coding |
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