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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96627_cuf3 >transcript:BL96627_cuf3-protein ID=transcript:BL96627_cuf3-protein|Name=transcript:BL96627_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=269bp
CEQVCTDRVGFYECGCNDLFTLNQDGRTCRPLVNCSSPSPCHPDPVGTCA
ANITSGVRQEVCGCVTGYALQPDNSCRDVDECALDIDQCDEHGDCVNTVG
DYNCSCHTGYQITKNHGKRHCDDVNECAVDEGGCSDICENTDGSYNCACP
DGYNLGSDGKTCEDLNECVLGTDDCSTQAECNNTVGGFTCHCRDGFEGDG
TACGDIDECVRSDIVTCQVGCSNILGSYMCTCGTGFFLRSDQVSCQDLDE
CARNTDNCQQRCTNTVGSF Run BLAST on NCBI mRNA from alignment at Sc0000391:31768..35162- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96627_cuf3 ID=transcript:BL96627_cuf3|Name=transcript:BL96627_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3395bp|location=Sequence derived from alignment at Sc0000391:31768..35162- (Branchiostoma lanceolatum)
CGTGTGAGCAGGTCTGCACAGATCGGGTCGGGTTCTACGAGTGCGGCTGC
AATGATCTCTTCACTCTTAACCAAGATGGAAGGACATGCAGACGTAAGTT
CAGTCTTGTTAAGTTTTGTCTTCTCCTACAATAAGTGTTTCTAAAAACCA
ACTTGAAAGTACAGAGGCTATCACATGCATAAATAGCAAAGGCATGCCAT
AGTATCTATATAATACCTGTAAGTAACGAACGAACAAACGAATACAAAAT
GAATGAATAAAGGTAGGAATGGCTGAATAAATGAATGAATGAATGAATGA
ACATTGAAAGGGACAAATAAGCAAACAAATTGATGAATGATTGAATTAAT
GATTGATTGACCAAATGGATGAATGAATAAACAAATAGGTGAACAAATCA
ATGAAGGAAAGATGGATGGATGGATAGAAGGAAGGAAGGAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAAAACATCCACATCAATCGCATGGATGA
ATAAATGAACAAATTGATGAATAAACAAATAGATATCCATTATTAAAGCT
GTCCTTTTGCCTCCCCCCCAGCCCTGGTGAACTGCTCCAGCCCCAGCCCC
TGCCACCCCGACCCTGTGGGGACGTGTGCAGCTAACATCACCAGCGGTGT
GAGGCAGGAGGTGTGTGGTTGTGTCACTGGGTACGCCCTGCAACCAGACA
ACTCATGCAGAGGTAGGACGGCTATTTTCATTGTAGTTATTGCTGTTGTT
CCCTGTATGCCAGTAGTTATGGTGCCTACTGGCACATAGGGCAGCAAGTT
TCCTTGCTGTTCCAGTAGCAGGGTATATTTTTACAGGGAGGGGTTGCTAG
CACTTCCTCTTACTTTGATTGTACAGTGTGGGTGTGAAATAAACTTGGAA
AAAAAATGCCTACTATAGGGATTTCATGGTAAATAAAAGGAAGAAAATAA
ACCCACTGATTTTAAGGACATGTACTTTTTTTTGAAATTCTTTACATAAA
CTCCACCTCTCTCCTGCAAAAATAAATTCACAAACCCCCAATCATCATCA
TTGGTGGAAACCTACATAAAAAGTCATCAATTTGTTTTGATGATTATTAA
TACACTTGTAACATGAGTTAGAATATTCCCATATGTAGGTCAATGAATAA
TGAATTTCGTCACTATCTCAAGCCTGTATATGACTGTCTCTTGTCACGTG
ATTATCAACATCAAGTCACGTGACAAGAGAGCTCCAAGACGAGATTTGAC
CTTATTACCGGGTTGACGAAGAGACAGAGAATTTGTCTCGAAAGCTCCCC
AGAGCAATCTTTTTTATGTTGTGTGTATTGCTTAAATGTTTGCTTAAATA
ATGAATTTCATTTCCTCTTTATTTCAGATGTGGATGAGTGTGCGTTGGAC
ATTGACCAGTGTGACGAGCATGGTGACTGTGTGAACACTGTGGGTGACTA
CAACTGTAGCTGTCACACCGGGTATCAGATCACCAAGAACCATGGCAAAC
GCCACTGTGATGGTACAAACTTCCTTCATCATTCATACTATATAATAAAT
ATTATTATATAGAAATATCAACCAAGATTGTATGATATTCCTACATATAT
TGACTAAGCAGTACCATAATTAGAGCTAAAAAAAAAAGACAATTCCTGAA
AAATAGGCTTGGGTTCAAAAATTGGTTTTACCTAGAAATGTAAATTTCTC
AAAGTTATGTTCTTATAAGTGATTGAAATCAACAGGTTTTGTTTTATATG
TCGTTGAAGTTTGTAGAATGATTGATGCAAAAGTAGACAATGAATTTTAT
TATCATTATTAGTTTCAGGTCCTGCTTGGTCATATTTTGTAGCAAACTGA
GCAGACATACATGGGGATGCCTTGAAACAAAAAAAAACACATGTATGCAT
GTTATGGGCTCCCCCTTGCAGATGTGAATGAATGTGCAGTAGATGAGGGC
GGCTGTAGTGACATCTGTGAGAACACAGACGGCTCCTATAACTGTGCCTG
CCCTGATGGCTACAACCTGGGATCGGACGGCAAGACTTGCGAAGGTAGAT
GCTTTTTTTTGCCCTTTGACATACAAGATGGTGTGTTACATCTCAAAGTG
GTTTAACAGGCATATAAACAAAAGTATTTAGAAAGAAATGCTGACCATAC
AATGTCATGTTTTACTAGGAAGGAACCAAGGAAAAATATAATCACAACAG
AGAACTTTTCAGACAACAAACCTGTTAATTAAGATTAACTTGGAAACTAC
CAACAGCTTCTATATAAAAGATATAGTTAACAATTCTATACATTTTGTAT
TTACAAAATGTACAACATACAAAATTTATATTATGTTTATATACAGGAAA
AGTTGCATCATGTTCTCTTGTAACGTTTACTGAACAAACATTACAATATG
AAGTCTTGTCAACAAAACAATCACTTTTTGCTCTTAAAGCTGTTACAGTA
GTGTTACAGTTGTTGATTTGAATGCTCATGATTTTTCTCCCATGTCTCCC
AGACCTGAATGAGTGTGTGTTAGGCACGGATGACTGCTCCACACAAGCCG
AATGTAACAACACCGTCGGTGGGTTCACCTGTCACTGCAGGGATGGGTTT
GAGGGAGACGGGACCGCGTGTGGAGGTAAGTAAACTCTCATGACTACCGT
ACTTGAAAACAGCTAGATTGTCAAGTTTTATTTTTGAAAGGTATGATATC
TTAGACTTCATTCGGCAGTAGGGGAAAAGGAGGGCTTTGCATAAAAATTA
TATTCTAATTGGCAGTTAAAGCAATCAATGAAAATAGTATTAAACTCGGA
AAAGAAAACGCCTATTCAGGGTGTCAGGATTTTGAGGCAGAAAAGAAAAC
CTCTATGAATACTTAAAGATTTACAGTAGTTTATATGTCTATGCTACAGG
TGCAATAAACTGTTGATCCACTCTGTAAGGTTGCCATCTGTGTTACAGAG
TTCCTTTTGTTTCTACCCCACAGATATAGATGAGTGCGTGCGATCAGACA
TTGTGACGTGCCAGGTGGGGTGCAGTAACATCTTGGGCAGCTACATGTGC
ACCTGTGGAACTGGCTTCTTCCTCAGAAGTGATCAAGTGTCATGTCAAGG
TGGGAAAATGTCTCAAATTACATCAACTTTCAATTTTCTTTTTTTTTTGT
CCATGATAAGAAAATTCTTTGTGTTGGTTGTGCCTTGAGATGTCTAATCA
TTTGTTAGACTGTGTATCCTCTAAAACATTATCTATACAACTATGTCAAT
ATCCTAGACATCAGCATAGATTATGTTATCATTTAGTCAAGTTAAGCATA
TTTTGATGGCTAATCACTTGTTTTCAGATTTGGATGAGTGTGCCCGGAAC
ACAGACAACTGCCAGCAGAGGTGCACCAACACTGTGGGATCCTTC Coding sequence (CDS) from alignment at Sc0000391:31768..35162- >transcript:BL96627_cuf3 ID=transcript:BL96627_cuf3|Name=transcript:BL96627_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=5649bp|location=Sequence derived from alignment at Sc0000391:31768..35162- (Branchiostoma lanceolatum)
TGTGAGCAGGTCTGCACAGATCGGGTCGGGTTCTACGAGTGCGGCTGCAA
TGATCTCTTCACTCTTAACCAAGATGGAAGGACATGCAGACCCCTGGTGA
ACTGCTCCAGCCCCAGCCCCTGCCACCCCGACCCTGTGGGGACGTGTGCA
GCTAACATCACCAGCGGTGTGAGGCAGGAGGTGTGTGGTTGTGTCACTGG
GTACGCCCTGCAACCAGACAACTCATGCAGAGATGTGGATGAGTGTGCGT
TGGACATTGACCAGTGTGACGAGCATGGTGACTGTGTGAACACTGTGGGT
GACTACAACTGTAGCTGTCACACCGGGTATCAGATCACCAAGAACCATGG
CAAACGCCACTGTGATGATGTGAATGAATGTGCAGTAGATGAGGGCGGCT
GTAGTGACATCTGTGAGAACACAGACGGCTCCTATAACTGTGCCTGCCCT
GATGGCTACAACCTGGGATCGGACGGCAAGACTTGCGAAGACCTGAATGA
GTGTGTGTTAGGCACGGATGACTGCTCCACACAAGCCGAATGTAACAACA
CCGTCGGTGGGTTCACCTGTCACTGCAGGGATGGGTTTGAGGGAGACGGG
ACCGCGTGTGGAGATATAGATGAGTGCGTGCGATCAGACATTGTGACGTG
CCAGGTGGGGTGCAGTAACATCTTGGGCAGCTACATGTGCACCTGTGGAA
CTGGCTTCTTCCTCAGAAGTGATCAAGTGTCATGTCAAGATTTGGATGAG
TGTGCCCGGAACACAGACAACTGCCAGCAGAGGTGCACCAACACTGTGGG
ATCCTTCTGTGAGCAGGTCTGCACAGATCGGGTCGGGTTCTACGAGTGCG
GCTGCAATGATCTCTTCACTCTTAACCAAGATGGAAGGACATGCAGACCC
CTGGTGAACTGCTCCAGCCCCAGCCCCTGCCACCCCGACCCTGTGGGGAC
GTGTGCAGCTAACATCACCAGCGGTGTGAGGCAGGAGGTGTGTGGTTGTG
TCACTGGGTACGCCCTGCAACCAGACAACTCATGCAGAGATGTGGATGAG
TGTGCGTTGGACATTGACCAGTGTGACGAGCATGGTGACTGTGTGAACAC
TGTGGGTGACTACAACTGTAGCTGTCACACCGGGTATCAGATCACCAAGA
ACCATGGCAAACGCCACTGTGATGATGTGAATGAATGTGCAGTAGATGAG
GGCGGCTGTAGTGACATCTGTGAGAACACAGACGGCTCCTATAACTGTGC
CTGCCCTGATGGCTACAACCTGGGATCGGACGGCAAGACTTGCGAAGACC
TGAATGAGTGTGTGTTAGGCACGGATGACTGCTCCACACAAGCCGAATGT
AACAACACCGTCGGTGGGTTCACCTGTCACTGCAGGGATGGGTTTGAGGG
AGACGGGACCGCGTGTGGAGATATAGATGAGTGCGTGCGATCAGACATTG
TGACGTGCCAGGTGGGGTGCAGTAACATCTTGGGCAGCTACATGTGCACC
TGTGGAACTGGCTTCTTCCTCAGAAGTGATCAAGTGTCATGTCAAGATTT
GGATGAGTGTGCCCGGAACACAGACAACTGCCAGCAGAGGTGCACCAACA
CTGTGGGATCCTTCTGTGAGCAGGTCTGCACAGATCGGGTCGGGTTCTAC
GAGTGCGGCTGCAATGATCTCTTCACTCTTAACCAAGATGGAAGGACATG
CAGACCCCTGGTGAACTGCTCCAGCCCCAGCCCCTGCCACCCCGACCCTG
TGGGGACGTGTGCAGCTAACATCACCAGCGGTGTGAGGCAGGAGGTGTGT
GGTTGTGTCACTGGGTACGCCCTGCAACCAGACAACTCATGCAGAGATGT
GGATGAGTGTGCGTTGGACATTGACCAGTGTGACGAGCATGGTGACTGTG
TGAACACTGTGGGTGACTACAACTGTAGCTGTCACACCGGGTATCAGATC
ACCAAGAACCATGGCAAACGCCACTGTGATGATGTGAATGAATGTGCAGT
AGATGAGGGCGGCTGTAGTGACATCTGTGAGAACACAGACGGCTCCTATA
ACTGTGCCTGCCCTGATGGCTACAACCTGGGATCGGACGGCAAGACTTGC
GAAGACCTGAATGAGTGTGTGTTAGGCACGGATGACTGCTCCACACAAGC
CGAATGTAACAACACCGTCGGTGGGTTCACCTGTCACTGCAGGGATGGGT
TTGAGGGAGACGGGACCGCGTGTGGAGATATAGATGAGTGCGTGCGATCA
GACATTGTGACGTGCCAGGTGGGGTGCAGTAACATCTTGGGCAGCTACAT
GTGCACCTGTGGAACTGGCTTCTTCCTCAGAAGTGATCAAGTGTCATGTC
AAGATTTGGATGAGTGTGCCCGGAACACAGACAACTGCCAGCAGAGGTGC
ACCAACACTGTGGGATCCTTCTGTGAGCAGGTCTGCACAGATCGGGTCGG
GTTCTACGAGTGCGGCTGCAATGATCTCTTCACTCTTAACCAAGATGGAA
GGACATGCAGACCCCTGGTGAACTGCTCCAGCCCCAGCCCCTGCCACCCC
GACCCTGTGGGGACGTGTGCAGCTAACATCACCAGCGGTGTGAGGCAGGA
GGTGTGTGGTTGTGTCACTGGGTACGCCCTGCAACCAGACAACTCATGCA
GAGATGTGGATGAGTGTGCGTTGGACATTGACCAGTGTGACGAGCATGGT
GACTGTGTGAACACTGTGGGTGACTACAACTGTAGCTGTCACACCGGGTA
TCAGATCACCAAGAACCATGGCAAACGCCACTGTGATGATGTGAATGAAT
GTGCAGTAGATGAGGGCGGCTGTAGTGACATCTGTGAGAACACAGACGGC
TCCTATAACTGTGCCTGCCCTGATGGCTACAACCTGGGATCGGACGGCAA
GACTTGCGAAGACCTGAATGAGTGTGTGTTAGGCACGGATGACTGCTCCA
CACAAGCCGAATGTAACAACACCGTCGGTGGGTTCACCTGTCACTGCAGG
GATGGGTTTGAGGGAGACGGGACCGCGTGTGGAGATATAGATGAGTGCGT
GCGATCAGACATTGTGACGTGCCAGGTGGGGTGCAGTAACATCTTGGGCA
GCTACATGTGCACCTGTGGAACTGGCTTCTTCCTCAGAAGTGATCAAGTG
TCATGTCAAGATTTGGATGAGTGTGCCCGGAACACAGACAACTGCCAGCA
GAGGTGCACCAACACTGTGGGATCCTTCTGTGAGCAGGTCTGCACAGATC
GGGTCGGGTTCTACGAGTGCGGCTGCAATGATCTCTTCACTCTTAACCAA
GATGGAAGGACATGCAGACCCCTGGTGAACTGCTCCAGCCCCAGCCCCTG
CCACCCCGACCCTGTGGGGACGTGTGCAGCTAACATCACCAGCGGTGTGA
GGCAGGAGGTGTGTGGTTGTGTCACTGGGTACGCCCTGCAACCAGACAAC
TCATGCAGAGATGTGGATGAGTGTGCGTTGGACATTGACCAGTGTGACGA
GCATGGTGACTGTGTGAACACTGTGGGTGACTACAACTGTAGCTGTCACA
CCGGGTATCAGATCACCAAGAACCATGGCAAACGCCACTGTGATGATGTG
AATGAATGTGCAGTAGATGAGGGCGGCTGTAGTGACATCTGTGAGAACAC
AGACGGCTCCTATAACTGTGCCTGCCCTGATGGCTACAACCTGGGATCGG
ACGGCAAGACTTGCGAAGACCTGAATGAGTGTGTGTTAGGCACGGATGAC
TGCTCCACACAAGCCGAATGTAACAACACCGTCGGTGGGTTCACCTGTCA
CTGCAGGGATGGGTTTGAGGGAGACGGGACCGCGTGTGGAGATATAGATG
AGTGCGTGCGATCAGACATTGTGACGTGCCAGGTGGGGTGCAGTAACATC
TTGGGCAGCTACATGTGCACCTGTGGAACTGGCTTCTTCCTCAGAAGTGA
TCAAGTGTCATGTCAAGATTTGGATGAGTGTGCCCGGAACACAGACAACT
GCCAGCAGAGGTGCACCAACACTGTGGGATCCTTCTGTGAGCAGGTCTGC
ACAGATCGGGTCGGGTTCTACGAGTGCGGCTGCAATGATCTCTTCACTCT
TAACCAAGATGGAAGGACATGCAGACCCCTGGTGAACTGCTCCAGCCCCA
GCCCCTGCCACCCCGACCCTGTGGGGACGTGTGCAGCTAACATCACCAGC
GGTGTGAGGCAGGAGGTGTGTGGTTGTGTCACTGGGTACGCCCTGCAACC
AGACAACTCATGCAGAGATGTGGATGAGTGTGCGTTGGACATTGACCAGT
GTGACGAGCATGGTGACTGTGTGAACACTGTGGGTGACTACAACTGTAGC
TGTCACACCGGGTATCAGATCACCAAGAACCATGGCAAACGCCACTGTGA
TGATGTGAATGAATGTGCAGTAGATGAGGGCGGCTGTAGTGACATCTGTG
AGAACACAGACGGCTCCTATAACTGTGCCTGCCCTGATGGCTACAACCTG
GGATCGGACGGCAAGACTTGCGAAGACCTGAATGAGTGTGTGTTAGGCAC
GGATGACTGCTCCACACAAGCCGAATGTAACAACACCGTCGGTGGGTTCA
CCTGTCACTGCAGGGATGGGTTTGAGGGAGACGGGACCGCGTGTGGAGAT
ATAGATGAGTGCGTGCGATCAGACATTGTGACGTGCCAGGTGGGGTGCAG
TAACATCTTGGGCAGCTACATGTGCACCTGTGGAACTGGCTTCTTCCTCA
GAAGTGATCAAGTGTCATGTCAAGATTTGGATGAGTGTGCCCGGAACACA
GACAACTGCCAGCAGAGGTGCACCAACACTGTGGGATCCTTCTGTGAGCA
GGTCTGCACAGATCGGGTCGGGTTCTACGAGTGCGGCTGCAATGATCTCT
TCACTCTTAACCAAGATGGAAGGACATGCAGACCCCTGGTGAACTGCTCC
AGCCCCAGCCCCTGCCACCCCGACCCTGTGGGGACGTGTGCAGCTAACAT
CACCAGCGGTGTGAGGCAGGAGGTGTGTGGTTGTGTCACTGGGTACGCCC
TGCAACCAGACAACTCATGCAGAGATGTGGATGAGTGTGCGTTGGACATT
GACCAGTGTGACGAGCATGGTGACTGTGTGAACACTGTGGGTGACTACAA
CTGTAGCTGTCACACCGGGTATCAGATCACCAAGAACCATGGCAAACGCC
ACTGTGATGATGTGAATGAATGTGCAGTAGATGAGGGCGGCTGTAGTGAC
ATCTGTGAGAACACAGACGGCTCCTATAACTGTGCCTGCCCTGATGGCTA
CAACCTGGGATCGGACGGCAAGACTTGCGAAGACCTGAATGAGTGTGTGT
TAGGCACGGATGACTGCTCCACACAAGCCGAATGTAACAACACCGTCGGT
GGGTTCACCTGTCACTGCAGGGATGGGTTTGAGGGAGACGGGACCGCGTG
TGGAGATATAGATGAGTGCGTGCGATCAGACATTGTGACGTGCCAGGTGG
GGTGCAGTAACATCTTGGGCAGCTACATGTGCACCTGTGGAACTGGCTTC
TTCCTCAGAAGTGATCAAGTGTCATGTCAAGATTTGGATGAGTGTGCCCG
GAACACAGACAACTGCCAGCAGAGGTGCACCAACACTGTGGGATCCTTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000391 | genome | Sc0000391:31768..35162 - |
Properties
| Property Name | Value |
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| Transcript id | BL96627_cuf3 |
| Biotype | protein_coding |
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