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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96626_cuf2 >transcript:BL96626_cuf2-protein ID=transcript:BL96626_cuf2-protein|Name=transcript:BL96626_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=206bp
ASPLTPTIPGVTSVFISPTVTRPTGVPPVVLPEAPECNTDCHVQARFLTI
GNREQCVCNPGWTGNGTYCELAANGFNLRLRMKNISFVDELNNCNSQEFQ
DLWPIVFRRLDSYYRYHQNSHISDNFLYCNLQLFLNGSVIAYHTATFKDD
SLLTRDDVAAALSQAISADTANTLGFDPESPAIEELCYRSYCMNRGSCFQ
SASGER Run BLAST on NCBI mRNA from alignment at Sc0000391:26723..31032- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96626_cuf2 ID=transcript:BL96626_cuf2|Name=transcript:BL96626_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4310bp|location=Sequence derived from alignment at Sc0000391:26723..31032- (Branchiostoma lanceolatum)
GCTTCACCACTGACTCCTACAATACCTGGTGTAACTTCAGTCTTCATATC
CCCTACCGTCACTCGCCCTACAGGTACATTGTATGATACTATATGAGTAC
AAAGTTAACATAGATCTCTGTTAATTCACATTGGATGAATTCTGGTTTTG
TATAAGTGAGGGGGGGAGGGATGGAATAAGAGAGGGATTGTGCATGGGGG
GGGGGGGAGGGGTGAATGAAGAAATGGGTATTCCAAGCGGTCAATGAGTG
GTTAGTAGGTGGGTGGGTTGGTCTGTAGGTGAGTGTTTGAGTCACTACAG
CATCGAGTGAGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGT
GAGTGAGTTAGTGAGTATTTGAGTGAGTGAGTGGGTGAGTGAGTGAGTGA
GTAAGTGAGAGAGAGAGTGAGTATTTGAGTGACTACAGCTGCTGCAGTGA
GTGTGAAGGTTGAGAGAGTGTGATGTTGAGTGAGTGAGTGATTGAGTGAG
TGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGAGCAAGAATGAGTCAACC
AGTTATCACTAAACACAAGTTCAACAAGAGACATTATATTAAGTATTGAT
AGATTACATAGGGATGGAGGAAGAGAGGGATTGTGTATGTGGGGGGGATG
AAGAAATGGGCAAGTGGTGAATGGGTGAGTGAGTGAGTGAGTGAGTGAGT
GAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGA
GTGAGTGAGAACAAGAATGAGTCAACCAGTTATCACACATTTTCAAGAAG
ACATTATATTCTGCTGATTACAGCCATGTGAAGAAGATTTAACATTTCAT
AAACTATCTAGCACTTTCAAATAAAAAATACTAATAAAGTCATCAGAAGA
CTGCTGTATTGGTGAACATTATATTACTTTTCTTACCCTTAACAGGTGTG
CCTCCAGTTGTTCTTCCTGAAGCGCCGGAGTGTAACACAGACTGCCATGT
CCAGGCTCGCTTCTTAACCATAGGGAACAGGGAACAGTGTGTGTGCAACC
CTGGATGGACGGGGAATGGGACATACTGTGAACTGGGTAGGTAACAGGAC
AATTATGTATAACAATGGGGAATGGGGCACACTGTGGACTGGGAATATAT
ACATTGTAACATTACAGTCATGCCTAACAATAGGGAACAGAGAACAATGT
GCACATGTGTGAAACCCTGGGTGGACTGGAAATGGAAAATACAAATGTAT
TGAGAACTGGGTGAGAAACCTAAGATTTAAGATTCTTTTTGTTTGTGGCT
TAGATGGCTAAGTGGCTAGGCTAGTCTAGGCTAGGCTATGTTCGATCCCT
GGTGTTCCTGGCTAGATGCTGTGCCCTTGAGAAAGGCCTTTACACAACTT
TCCTCACTCCATCCTGGTAAAATAGGTACCTGACTTTGGTGAGAGGTTAA
AGACAGTGGAAGGAGGGGGATGGGCTTTGCCATCTTGATTTCATGCCCTA
AACATATAGTGGATAACAACCCACTGCCCCTACAGCCTCAAGAAGGCTAT
TTGACTACCTATACCTTTTTTTTACAGTAGTGTTCTGATATTTATTGCAA
CAACTGTTATACAGTAAACAATATCTTAATCTCAAGAGACTGACTTCATA
TCTCGTCATGAATGTTGTAGATATTTAAGATTCTCCATGATATCAATTTT
AAAACAAATTCTGATGCGGGGTTTCTATAATCTTTTTAGAAAGACAAGAC
GGCCTCTATATCAAATGCTTATGAAACTGTTTAGCCAAGGGCTGCTGCTG
GTAATTGTGTCAGGTCCCGGACGTCACTGGAAATCTGTTTAAGGCAGTCA
CGCTGGAAGGCTAACCAATTTTAAGGTATCAAAGCAATTGGATTTCTACC
AAAGAAACCCAGTAACTTTGTTACCCTTTGTTGCAAAGTCTACCACCCAC
TCTACTTTTCTTAGCTTACTAGATTGTAAAATCATTACTGCCCCAATCTC
TATTGAAGTACATTTAGTTTGACAATGTATAGATCTACAGATAGTCTTCA
GATTTTTATGGTGCAATTTGTATCAATTTTCAGAAACACACTAATGAAAA
GCTTGTTTGTTGCCTGATGTAAAACTGTAAATCTGGATATCTTTGTTCAT
GGTTTTGTTTTCCCAGTGACCTCCTCACTGCAAATCACTACAAATACATG
TTCCATTGAATGGCTTCTGTGCTACACAAATGTTTCAATTGTGAACGCCA
TTAAAAACTCCTTTTGCCTCCTATGTATACTTATTGTAAAATAAAACCGC
CACAGACGTAAATGAATTTATCTTTTTTCCAACACGTTGTTGAACAATAC
AACCTTGAGTTTTTTACTCTTCCCTGTTTGAACATTAAGAAGAATTTCAG
ACATATTTTCATCTCCTTCCCCAGCTGCCAACGGGTTCAACCTGAGACTG
AGAATGAAGAACATCTCGTTTGTGGACGAGCTGAACAACTGCAACTCTCA
GGAGTTCCAGGACCTCTGGCCAATTGTCTTCAGAAGGGTCAGTAGATATT
GATAATTGACATATTGATTGATTGACTGATTGATGGATGGATTTGGATTC
ACCTGTCAGTTCAAAAGGTGAGTAGGCATGCAAGTCAGGTATTATAGATA
AGGCCAAAACAAAACCACTCTTCTTATTCAGTTTGAAGGGAACGGAAATT
CTATCCTATTTGCATAGATTCCTTTGAATTGATAAACGTAGTCTGAAGTA
TAGTACAGATATAATCGAATGTTATCTCTTTATTGGTAAATACAAGCTTA
GCCATTTCTTTGACCTAAAGATGATTAGAAGAACACAATTAAAGAGGAAC
TCAAGTTTTGAAGCTGGTGCAATTTTCTAAAAGATCACATTGTTATTTGA
TACAAAATCAAACAAATTATGTGAACTTTCATCACAGATAAACAAAGTAA
TCATTCAGTAAAGTAATGTATCAGTTGTGTTGTTGTATTGTATCATTTAC
AAGCTTCTTGCTTTATGTATTATCATGCTCATCTATCAATGATGGCCATA
AATTGTTGTTAATCCATAACTCAAATTTGTTGCTTCTTCTCTCTATACAT
GTAGCTGGATAGTTACTACCGTTACCACCAGAACAGTCATATCTCAGACA
ACTTCCTGTACTGTAACCTGCAACTGTTCCTGAACGGCAGCGTCATAGCC
TATCACACAGCCACCTTCAAGGACGACTCTCTCCTCACCAGGGATGACGT
AGCTGCTGCCCTGTCCCAGGCTATATCTGCTGATACAGCCAACACGCTCG
GGTTTGACCCCGAGTCTCCAGCAATAGAAGGTAAAGACTTGTTAGATCTT
CCTCGATACTGTACAGTGGGTAAGAATATTTTAACTGTTTTGCAAGTGTT
TTTCTAGCACTGTCCTTTGTAGAGTCTCCTGGTTATGTTGTGGGTATGCT
TACTTGTGTGTTTGTTTGATTGCTTGCTTGATTTTTCAGTCTATTTCTTG
GTTGTTGCTTGTTTATTTAATCAGGCAGCCCATGGCTAGCTTTTTTCATG
TACATTAACAGGCCAACAGCCTCGCACAGTTACACACTTAGTAATACACA
GTTTCTGGTTATTTCTTTCACCCAAACTACCTAGAACAGAAGATACTCCC
TTTTTTTTCTGAAGATATTTTCTAATATATACTTCTGAGTCTGTAGATAT
GATGTAATTTCAAGTGTGTGCTGCAGAGTGGTCCTCTCCTTGGTGCTGAA
ATGGAATCAGCTGACGCAGAGTCTGATATACAGTTGATAAGGCTCCAAAA
TGCACTTTTCTACCATGGCCCTGATCTTAATATACCATATTCTATCACTA
TTTTCAAATATTGATAAGATATGTTATGCTTTAATTTGCAGTTTTATATT
GTGTGATGTGTCACCCATGTAACATGGCTGTATTTCAAGTAGTAGCTAAA
TTTCCTATATATTGTTCTTGCATGCAGACAGCATAACTCAAGAAGCTGTG
GATGGATCCTCATCATATCTCTTTTTCACATGAAACGTTATGATTATTCA
AATAGTATGGTCTATGTAAAACTATGCAAAAGTTTGACTGATGCCCATTC
CCCATGGTTCCCTTGCAGACCTGTACAAGATATTACATGAAATGTTATAT
TCAAAGATTGTTCGTTGAAATAGTTTTGCCTATGTAAAACTTTGCACGTG
GAAAGTTATCAAGTTTGGCTAATGACGTGTTGTTTCCTTGCAGAGCTGTG
CTACAGGAGCTACTGTATGAACAGGGGGAGCTGCTTTCAGTCAGCCAGTG
GGGAGAGGAC Coding sequence (CDS) from alignment at Sc0000391:26723..31032- >transcript:BL96626_cuf2 ID=transcript:BL96626_cuf2|Name=transcript:BL96626_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=3090bp|location=Sequence derived from alignment at Sc0000391:26723..31032- (Branchiostoma lanceolatum)
GCTTCACCACTGACTCCTACAATACCTGGTGTAACTTCAGTCTTCATATC
CCCTACCGTCACTCGCCCTACAGGTGTGCCTCCAGTTGTTCTTCCTGAAG
CGCCGGAGTGTAACACAGACTGCCATGTCCAGGCTCGCTTCTTAACCATA
GGGAACAGGGAACAGTGTGTGTGCAACCCTGGATGGACGGGGAATGGGAC
ATACTGTGAACTGGCTGCCAACGGGTTCAACCTGAGACTGAGAATGAAGA
ACATCTCGTTTGTGGACGAGCTGAACAACTGCAACTCTCAGGAGTTCCAG
GACCTCTGGCCAATTGTCTTCAGAAGGCTGGATAGTTACTACCGTTACCA
CCAGAACAGTCATATCTCAGACAACTTCCTGTACTGTAACCTGCAACTGT
TCCTGAACGGCAGCGTCATAGCCTATCACACAGCCACCTTCAAGGACGAC
TCTCTCCTCACCAGGGATGACGTAGCTGCTGCCCTGTCCCAGGCTATATC
TGCTGATACAGCCAACACGCTCGGGTTTGACCCCGAGTCTCCAGCAATAG
AAGAGCTGTGCTACAGGAGCTACTGTATGAACAGGGGGAGCTGCTTTCAG
TCAGCCAGTGGGGAGAGGGCTTCACCACTGACTCCTACAATACCTGGTGT
AACTTCAGTCTTCATATCCCCTACCGTCACTCGCCCTACAGGTGTGCCTC
CAGTTGTTCTTCCTGAAGCGCCGGAGTGTAACACAGACTGCCATGTCCAG
GCTCGCTTCTTAACCATAGGGAACAGGGAACAGTGTGTGTGCAACCCTGG
ATGGACGGGGAATGGGACATACTGTGAACTGGCTGCCAACGGGTTCAACC
TGAGACTGAGAATGAAGAACATCTCGTTTGTGGACGAGCTGAACAACTGC
AACTCTCAGGAGTTCCAGGACCTCTGGCCAATTGTCTTCAGAAGGCTGGA
TAGTTACTACCGTTACCACCAGAACAGTCATATCTCAGACAACTTCCTGT
ACTGTAACCTGCAACTGTTCCTGAACGGCAGCGTCATAGCCTATCACACA
GCCACCTTCAAGGACGACTCTCTCCTCACCAGGGATGACGTAGCTGCTGC
CCTGTCCCAGGCTATATCTGCTGATACAGCCAACACGCTCGGGTTTGACC
CCGAGTCTCCAGCAATAGAAGAGCTGTGCTACAGGAGCTACTGTATGAAC
AGGGGGAGCTGCTTTCAGTCAGCCAGTGGGGAGAGGGCTTCACCACTGAC
TCCTACAATACCTGGTGTAACTTCAGTCTTCATATCCCCTACCGTCACTC
GCCCTACAGGTGTGCCTCCAGTTGTTCTTCCTGAAGCGCCGGAGTGTAAC
ACAGACTGCCATGTCCAGGCTCGCTTCTTAACCATAGGGAACAGGGAACA
GTGTGTGTGCAACCCTGGATGGACGGGGAATGGGACATACTGTGAACTGG
CTGCCAACGGGTTCAACCTGAGACTGAGAATGAAGAACATCTCGTTTGTG
GACGAGCTGAACAACTGCAACTCTCAGGAGTTCCAGGACCTCTGGCCAAT
TGTCTTCAGAAGGCTGGATAGTTACTACCGTTACCACCAGAACAGTCATA
TCTCAGACAACTTCCTGTACTGTAACCTGCAACTGTTCCTGAACGGCAGC
GTCATAGCCTATCACACAGCCACCTTCAAGGACGACTCTCTCCTCACCAG
GGATGACGTAGCTGCTGCCCTGTCCCAGGCTATATCTGCTGATACAGCCA
ACACGCTCGGGTTTGACCCCGAGTCTCCAGCAATAGAAGAGCTGTGCTAC
AGGAGCTACTGTATGAACAGGGGGAGCTGCTTTCAGTCAGCCAGTGGGGA
GAGGGCTTCACCACTGACTCCTACAATACCTGGTGTAACTTCAGTCTTCA
TATCCCCTACCGTCACTCGCCCTACAGGTGTGCCTCCAGTTGTTCTTCCT
GAAGCGCCGGAGTGTAACACAGACTGCCATGTCCAGGCTCGCTTCTTAAC
CATAGGGAACAGGGAACAGTGTGTGTGCAACCCTGGATGGACGGGGAATG
GGACATACTGTGAACTGGCTGCCAACGGGTTCAACCTGAGACTGAGAATG
AAGAACATCTCGTTTGTGGACGAGCTGAACAACTGCAACTCTCAGGAGTT
CCAGGACCTCTGGCCAATTGTCTTCAGAAGGCTGGATAGTTACTACCGTT
ACCACCAGAACAGTCATATCTCAGACAACTTCCTGTACTGTAACCTGCAA
CTGTTCCTGAACGGCAGCGTCATAGCCTATCACACAGCCACCTTCAAGGA
CGACTCTCTCCTCACCAGGGATGACGTAGCTGCTGCCCTGTCCCAGGCTA
TATCTGCTGATACAGCCAACACGCTCGGGTTTGACCCCGAGTCTCCAGCA
ATAGAAGAGCTGTGCTACAGGAGCTACTGTATGAACAGGGGGAGCTGCTT
TCAGTCAGCCAGTGGGGAGAGGGCTTCACCACTGACTCCTACAATACCTG
GTGTAACTTCAGTCTTCATATCCCCTACCGTCACTCGCCCTACAGGTGTG
CCTCCAGTTGTTCTTCCTGAAGCGCCGGAGTGTAACACAGACTGCCATGT
CCAGGCTCGCTTCTTAACCATAGGGAACAGGGAACAGTGTGTGTGCAACC
CTGGATGGACGGGGAATGGGACATACTGTGAACTGGCTGCCAACGGGTTC
AACCTGAGACTGAGAATGAAGAACATCTCGTTTGTGGACGAGCTGAACAA
CTGCAACTCTCAGGAGTTCCAGGACCTCTGGCCAATTGTCTTCAGAAGGC
TGGATAGTTACTACCGTTACCACCAGAACAGTCATATCTCAGACAACTTC
CTGTACTGTAACCTGCAACTGTTCCTGAACGGCAGCGTCATAGCCTATCA
CACAGCCACCTTCAAGGACGACTCTCTCCTCACCAGGGATGACGTAGCTG
CTGCCCTGTCCCAGGCTATATCTGCTGATACAGCCAACACGCTCGGGTTT
GACCCCGAGTCTCCAGCAATAGAAGAGCTGTGCTACAGGAGCTACTGTAT
GAACAGGGGGAGCTGCTTTCAGTCAGCCAGTGGGGAGAGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000391 | genome | Sc0000391:26723..31032 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96626_cuf2 |
| Biotype | protein_coding |
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