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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96620_cuf1 >transcript:BL96620_cuf1-protein ID=transcript:BL96620_cuf1-protein|Name=transcript:BL96620_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=215bp
CVVIAVIFIRKRTRQEREKYAFYYGMGSRMLREDDDQESGRSPRRGDMEK
GACQEVDYSTIDRLKRKAGERGNKKFARVLYNYAPQDSDELKLEANDVIE
VIKGENGGWWFGYLKGKVGLFPSNYVELVSTPPVHRPHHVARRSDREELE
RNVQQTLAQFDEVCSAKKIPEPRRRERAPASPDAVXNLDDVREHQLPLML
SCTSHVIVGMTSLWR Run BLAST on NCBI mRNA from alignment at Sc0000000:10272669..10279152+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96620_cuf1 ID=transcript:BL96620_cuf1|Name=transcript:BL96620_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=6484bp|location=Sequence derived from alignment at Sc0000000:10272669..10279152+ (Branchiostoma lanceolatum)
TGTGTGGTCATCGCCGTCATTTTTATAAGGTTCGTCAAATTTGTTTGTTT
AAAAATTAATTAGTAATTGAGGAAACTTTAGTCACACGTTCACATCTTTA
CACGTCGTTTTGTTCATTTATATTATCATAACGCTGAAACAAATATATAA
GTTATAACACTCCGTTAAACACAACTTTCAATTTTATAATATTCTCGAAA
TTATAAGGTTTTGTTAAGTCTTCGTGTTCCGTATCTGCTTGATACCAAGT
AAATCAAAACTGCAATATTTTTATGAAGTACCAATCATGATCGCAAGGTG
CCTCTTCATCCATGCAATCCTAGCTGCATTCCTAGCATAATCAAAGAGAA
CTGCCTTGGCTATTAATATTGTGAGTTTGTGTTCTAGATCCGGAGTTTCA
TTTTTGAAGTTTGCAATTGGATATTATCATTGAACACGTGTAGAACTTTC
TAAACTTCGAGTTTCTAACTTTTTGAAAGAAGGAAAAGGACAAGACAAGA
GCGTGAGAAGTACGCCTTCTACTACGGCATGGGTTCCCGGATGTTACGTG
AAGATGATGACCAGGAATCGGGAAGAAGTCCTCGGAGAGGGGACATGGAG
AAAGGTACATGTAAAACTTAATCTTCCAATTATTTTACTATCTAAATAGT
GTACAATAGATGCTATGGAAAATCAAATACAATTCAGTTCAATTTGCTTC
CATTTGTAAATAAGGCCTCGATATGAGGCTGAAAGAAATCAGCATATCAA
AAGTTTACACAATCTCCTCGAGATCAGAAACCTACGTGCTTCAAATTAAC
TTCTTATCATTGGAAACATGTGGTTATTTTTTGTGAGATTTGTGAGATTT
TGATGAAGCAGGCATTGTTTGTACATTAGTAAAAAGACGTAATTGTAACC
TTTTATTTGTGAATAACGAACCTGAGTGTGTAGGGATGAACGAAGGAAAT
AGATATTTCACTAAAAAGTATTTCTTATCTAAGATGGTATATGTTTCAAC
TTACATCAGACTGCTGCAGTTCCAAGTATGTTTGCTTGACGGCGTTGAAA
CACTGTTTTTTTTTAACTTGTTAGAACCGGTGTTTGTATGCATCATAGAC
TATGTCCTTTGAGTGTAATTTTTCGAGTATTTAATGATCAATAAATTCAC
TCTCAATTTTGTCGCTTATGATATGCGTCTTATTCCAATTTCTACTGTTC
AGGTGCTTGTCAGGAGGTGGACTACTCTACAATAGACAGGCTCAAAAGGA
AAGCAGGCGAGCGAGGTATGTTTAGCGTCTTGTGTTGTACAGTTCGTTTA
CGGGAAGACTAGACTCGGAAAGAGGAACTCGATGGTAATAAGATCGTAGT
TTGACTTTTGATACAACAAAGTAGTACAGGCCATTGGACCACATGACAAC
CTCTTGACAACTGTAATGAAGCGCAAGCTAATTATAAGATGGTTTGGTCA
TGTGATAAGATCGTCAGGGATTGCAAAAACTATACTACGAGGGACAGTGC
CAGGTAGCCGAAAGAGAGGAAGGCAGAGAAAACGGTGGGAAGATAACATA
AAAGAGTGGGTAGGTCTAAGCTTATCGCAAGCGATTAGAGCGGTAGAGGA
TAGAGTGAGGTGAAGGAGGATGGTGGGGTATTTATTAATGGTGCCCCAAC
GACCGAAAAAGAGGTCAAGGGATAGGTGATGTGATACGCAGAAGGTAGCT
AATTTTTGTAGTTTGCTCCCACTTGGCATTGTTTAGCCGATAGAATTGTT
TACTGTTACAACGATGATTTGCCATTGTCTTTAAGCTTTCGAAACTCTTA
TTGAGAATTTCCACCTATAATGCAGTGACAAAATTCATGTTGCTCCCCTT
ACGTTAGGTAATAAGAAATTCGCCAGAGTTCTCTACAATTACGCACCCCA
AGACAGCGATGAGCTTAAACTGGAGGCCAATGACGTCATAGAGGTCATCA
AAGGTGAAAATGGCGGTTGGTGGTTTGGATACCTCAAAGGGAAGGTCGGA
CTTTTCCCATCGAACTACGTGGAACTTGTGTCAACACCTCCAGTACACAG
ACCACACCATGGTAAGTTAGATTAACGGGATAAGGGCACGAACAAATGAT
AGGTTGTTAGAGTAGCCGTCCACTTGTTGGCTGACCAATGATATTACGTC
CTAATCATCTACATGTTGTATTTCATTTTCTAAGTGGTAACATTCATATT
ACTACACGATGGTACTAACTAATCCATTTTTCATACTGGTATTTTCTTAT
GATCTATCAAAAAAAATCCAGGAGGAGAAGTAATTGAATTTATTGATTTT
TATTCTTTTTATACTTCCTAAAAAGAGTTATGCATCCCAACAGTATACAG
AATGAAGACTTTTTATCATGGTTTAACGGAAACTTCTGTCGTTGTCATCC
AATTACGGTTTTAAATGTTATTTCTAGCACATTTTCGTTCAGTTATATTT
GGAAATATAAGTATTATACGACGTTAAAGGTCTGTACCACTTAATTAGTA
ACGCAACAGGGCATTTTCATATTTCAGTTGCAAGAAGAAGTGACAGAGAA
GAACTAGAACGTAACGTACAACAGACGTTAGCACAGGTAGGTGATTTCCC
TAGCGTACATTACAGGCAGCATCCAGATTAAAACAACACCATCACATAAC
CTTCGAAAATGGAAAACGACCAGTAAATGTATCATCTGAAATGGCCAAGT
ATTACTGAGGCCTTCTTCCAGTACAAGGCGAATGGAATAGTGCTATTCAT
GCTTTGATATTGATAAGATTTATGAATAACGGTTAACGGTTTAAATGTAT
CAAATGCATAATAGCCGTAGTTATGGGGGTTGATCTTATCTACAAGTTAT
AAGGAATCAAACTGTAATTGACAACACAAAGAACTGATGCAGGTTCAAAA
TTCCTCTCCATAATGGATTCGGCTAGCACAGATGGACGGTGATACTACAA
CGTGTGTGTCTTCGTTAATATATAAGTTTAATTATGGTACAGTAGAAAAC
AGAATTAAGCACATTATACCTTCATTTTGTTGTGCAAAAAGATATTTAGA
TTACTTAGCTAATCATAGCCCGCAACTCCACTGTGACCTCTCTTTGTTCT
GGTAAGAAAAACCAGATAGTCAGATGAACTACAAGATGGTTATCTTTCTC
TCTTCTCTTTTCCTATCCGCAGATGTTTTTTAAATTTCCTTAAGTATTAA
TTCTTAAGTATTCATAGCAATGAAATTTAAAAAAAAACAGTTTTCTTTAA
TCTGCCATGCGTTTTTTAAACATTCACACGACATATCAACGTGCGGTATG
TCCATTGTGATCATGGACATATCGACATTGCGTAGAAAGCTTTCACGTCG
TCATGTACAGTAAGTTAAAGCTTTACGTGCCTACATTAGCATGCATCAGA
CATATTGTTTCATTTCCCTCAATGTCCATGGGTTTTCCCACCGATACAAT
TTAACAGTTCCATTAGTCTCGCCCCTTCAGCCACACAAAGACCTCATTTC
TAACCATTCGGCAAGATGATGTTGATGAAGCGGATATTGAGCTCAGCGGA
CACAATTTGACAGGGTCCTTTTTTACGAGGTTCTCGGCACATTACCCTCC
GCTGTGGAGCCAGGGTGCCGGTGAACAGAATTGGAATTAATTTCCCTCTC
ACCAGGCACACACATAAAGGCTTGATGATTGAAGCTGGCTGTGATGAAAG
AATGCGTCTTTGCGCATAAAATCACAGAGGGCTTTGGGTCTGCTAAATGA
GAAAATTAAACTTTAACAAGGAGAAAGAGACTGAGACGTCACATGGCAGT
CACGAGGGTAACCATAGTATAGTACTCAGACAGTTGCACGATTTTCATTT
GATGAGCACGGGATAGCCATCTAGCTCCTAGCGTTTTTCGTAAGCTGCAT
TAGAATGAGGTGCAAATTGCAGTTGGATACCATGTTAGTAGCTTTCTACG
AGATGAACTGTTTGGTGGTCCAACATTTATTTCATCTTTCTTCAGTACAA
AATCAAACCACAAAGCAATTAAAGAAGATTATTCAAGATTGATTCTTTGA
ATCGGCAAAAGATTGATGTTATAAAATATTGGCAATTTTTCCATAAGAAA
GCTAAAAAGGTTTCTAAAATTTGTTAGTTTATCATTCTTATGAAATTACT
CGGTGTAAAACTGTAATGATGCCTACATCACATGATGTCACATAATAACA
GACTCGATCTTTCACCTAAATATTACAAAATGCAGGAATATCTTGTCACA
TTAGCTTTTGTAAGAATTAAAGGCCAGGTGTTTTCGAGAAACGACCTATC
TCTCCCCTCCATCTGGATCTTCCAAAAATAGGTTCCACCAAGGTCAACAG
TACCATAGTGATTATCCTTTCATCTTAGTAAGCATTTTTACTGATCCCTT
TTATATGCCTCTCGTCTAGCATCAAGGACGCGATTTCTTCATTTAAGTGC
ACTTCGGTAGCCTAAACTGAATATAGCTGATATCATATATGAAATTAAAT
ATACCCAGTGTGCACTTTGGTGTTATGCATGTATATTGTTGCACCTTCAG
GCAAGAAACAAGAATAATGCTTAGACTCGATATTAGGTGACTGGATAGCC
TTGATTGTTATCATACGGTTCTATGATTGAGAAGCCAAATGTTCCTAAAC
ATTACATTGAACCCGTAAACATAACTTTGAAAGTGGACTTGGGCTTACCA
ATATAGTACAATAGCTAGGTACTTCAGTGTAATATAACCAGCTGCTGCCG
CGCCGCGTGCCTGAGAAGCTGGTGTGTTACGCCGAAGGGCCGTTATACCG
GCTATATAGATACAGATACGTATTTTTGCGTATGAGAGATAGAAAAGTAT
ATAAAATGTAGAGTCTTAAACTCTGAACCTTTTTAGGCGAAAGGCTCTAT
TTATTTAGGTTTATCACAACGTAGAAGGGAGGGCAAAACAGATACATGTT
CACCTTTACAATTTGCCCTTCCACACTAAGAAATAACATCAACTGCGCAA
TACATTGCAAAATCAACCATATCTACAAATATCAAAAACAGGTGAAAAAA
TAGTAAAGCTTTGAATCATAAGAATATGTTAGATAAGTATCACTTGCATT
TTTGTATTTTCAATATTTTATTAATGATTTTTCTAATTTCATATTTCTTC
TGGACTTTCAGTTTGACGAAGTGTGTTCGGCCAAAAAAATACCGGAACCT
CGGCGACGTGAGAGAGCACCAGCTTCCCCTGATGCTGTCANGAACCTCGA
CGACGTGAGAGAGCACCAGCTTCCCCTGATGCTGTCATGTACCAGTCACG
TGATAGTCGGGATGACGTCACTCTGGAGATGAAATCGAGGGGTTTTCATG
GGAACGAGGTTAAATTGTGCCAAGTGCATCACGGGAAGGACGATGACGCT
GATGATGACGTTGATGAATACAAAGCTGTGTCTGTGTCTGAACGAATCCG
CCAGATGGAGCGAAAAGGATTGAATTATGGCAAACAATCTCAGCTATGAC
TGCCTCCAGACAGTTCGTCCACCATTGATAATCCAAAGCCATCAAAGGCT
AGTGCTGAATCGTGCACCGAAGACGTTTTAGTCTGACCAATATGGCAACG
GACTGGACTTTTGAGAGGTATAATAGCTTCAAGAAATTCTACTTGGCAGT
TTTAACATGGCGTCATGGCCAATCGAATGTGGCATTCTTGGACATGTTTG
AATGTTGAGATGTTGACAATATAGATCTTCAAGCATTGTGCAGCTAAAAC
CCTCTGTCAAGAGGGAATAATCTACTAGTAGGCAAACTGTGGTTGGCGCC
AACATCGTATCGATGATGTGAATTGATAAAAACTACATGTTTGTCACATT
TTGCTTGTATATGACTGAACGTAAGTAGCAATTCGTAACTGTTTGCTACA
TGCATCTTGATATATTAATAATGTTGACTGTGAAGACTTGCTTGCACTTT
GTGATAGTAAGAAACGGTAATTTTTATATCAAAGAAATTCTATATATGAT
AATACCAGTTTCAGACCAATGTTAGGACATATGTAGAACAACATTATAGT
GCTCATTTCAAATTCATTGACTGTACTTCCAAATTCTATGGTGTCCTCAA
GTTTATAATTGAATCTTTGCTGTGAATCTAGACCTTCATGTCCACAAAAC
CGCAATATAAATGTCTCGCAATTATATATTACATACCCGTCAATGAGAAT
GCATTGACATTTGCGAATAACCCATCATCTATTCCCCTTGCTGTAAGTAT
GCGTTAGCTGTTAATACATGAAATCACACCTCGCGACATATTTTGTAACC
CGATGTGTATATGATGTGATTAACATTTATACATACTTATTATACGTGGT
GTATGTCATGAACTATGGTAGCTTTCAAAGTTTGAAATGTTTGCAAAATA
AAGATCTTGTGATAGATCTTGTGCTTATTTAGCAATCGACCTCCTCTTGC
TCGGTGATTCTAATATAGATACTGACGACTGAAT Coding sequence (CDS) from alignment at Sc0000000:10272669..10279152+ >transcript:BL96620_cuf1 ID=transcript:BL96620_cuf1|Name=transcript:BL96620_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3888bp|location=Sequence derived from alignment at Sc0000000:10272669..10279152+ (Branchiostoma lanceolatum)
TGTGTGGTCATCGCCGTCATTTTTATAAGGAAAAGGACAAGACAAGAGCG
TGAGAAGTACGCCTTCTACTACGGCATGGGTTCCCGGATGTTACGTGAAG
ATGATGACCAGGAATCGGGAAGAAGTCCTCGGAGAGGGGACATGGAGAAA
GGTGCTTGTCAGGAGGTGGACTACTCTACAATAGACAGGCTCAAAAGGAA
AGCAGGCGAGCGAGGTAATAAGAAATTCGCCAGAGTTCTCTACAATTACG
CACCCCAAGACAGCGATGAGCTTAAACTGGAGGCCAATGACGTCATAGAG
GTCATCAAAGGTGAAAATGGCGGTTGGTGGTTTGGATACCTCAAAGGGAA
GGTCGGACTTTTCCCATCGAACTACGTGGAACTTGTGTCAACACCTCCAG
TACACAGACCACACCATGTTGCAAGAAGAAGTGACAGAGAAGAACTAGAA
CGTAACGTACAACAGACGTTAGCACAGTTTGACGAAGTGTGTTCGGCCAA
AAAAATACCGGAACCTCGGCGACGTGAGAGAGCACCAGCTTCCCCTGATG
CTGTCANGAACCTCGACGACGTGAGAGAGCACCAGCTTCCCCTGATGCTG
TCATGTACCAGTCACGTGATAGTCGGGATGACGTCACTCTGGAGATGATG
TGTGGTCATCGCCGTCATTTTTATAAGGAAAAGGACAAGACAAGAGCGTG
AGAAGTACGCCTTCTACTACGGCATGGGTTCCCGGATGTTACGTGAAGAT
GATGACCAGGAATCGGGAAGAAGTCCTCGGAGAGGGGACATGGAGAAAGG
TGCTTGTCAGGAGGTGGACTACTCTACAATAGACAGGCTCAAAAGGAAAG
CAGGCGAGCGAGGTAATAAGAAATTCGCCAGAGTTCTCTACAATTACGCA
CCCCAAGACAGCGATGAGCTTAAACTGGAGGCCAATGACGTCATAGAGGT
CATCAAAGGTGAAAATGGCGGTTGGTGGTTTGGATACCTCAAAGGGAAGG
TCGGACTTTTCCCATCGAACTACGTGGAACTTGTGTCAACACCTCCAGTA
CACAGACCACACCATGTTGCAAGAAGAAGTGACAGAGAAGAACTAGAACG
TAACGTACAACAGACGTTAGCACAGTTTGACGAAGTGTGTTCGGCCAAAA
AAATACCGGAACCTCGGCGACGTGAGAGAGCACCAGCTTCCCCTGATGCT
GTCANGAACCTCGACGACGTGAGAGAGCACCAGCTTCCCCTGATGCTGTC
ATGTACCAGTCACGTGATAGTCGGGATGACGTCACTCTGGAGATGATGTG
TGGTCATCGCCGTCATTTTTATAAGGAAAAGGACAAGACAAGAGCGTGAG
AAGTACGCCTTCTACTACGGCATGGGTTCCCGGATGTTACGTGAAGATGA
TGACCAGGAATCGGGAAGAAGTCCTCGGAGAGGGGACATGGAGAAAGGTG
CTTGTCAGGAGGTGGACTACTCTACAATAGACAGGCTCAAAAGGAAAGCA
GGCGAGCGAGGTAATAAGAAATTCGCCAGAGTTCTCTACAATTACGCACC
CCAAGACAGCGATGAGCTTAAACTGGAGGCCAATGACGTCATAGAGGTCA
TCAAAGGTGAAAATGGCGGTTGGTGGTTTGGATACCTCAAAGGGAAGGTC
GGACTTTTCCCATCGAACTACGTGGAACTTGTGTCAACACCTCCAGTACA
CAGACCACACCATGTTGCAAGAAGAAGTGACAGAGAAGAACTAGAACGTA
ACGTACAACAGACGTTAGCACAGTTTGACGAAGTGTGTTCGGCCAAAAAA
ATACCGGAACCTCGGCGACGTGAGAGAGCACCAGCTTCCCCTGATGCTGT
CANGAACCTCGACGACGTGAGAGAGCACCAGCTTCCCCTGATGCTGTCAT
GTACCAGTCACGTGATAGTCGGGATGACGTCACTCTGGAGATGATGTGTG
GTCATCGCCGTCATTTTTATAAGGAAAAGGACAAGACAAGAGCGTGAGAA
GTACGCCTTCTACTACGGCATGGGTTCCCGGATGTTACGTGAAGATGATG
ACCAGGAATCGGGAAGAAGTCCTCGGAGAGGGGACATGGAGAAAGGTGCT
TGTCAGGAGGTGGACTACTCTACAATAGACAGGCTCAAAAGGAAAGCAGG
CGAGCGAGGTAATAAGAAATTCGCCAGAGTTCTCTACAATTACGCACCCC
AAGACAGCGATGAGCTTAAACTGGAGGCCAATGACGTCATAGAGGTCATC
AAAGGTGAAAATGGCGGTTGGTGGTTTGGATACCTCAAAGGGAAGGTCGG
ACTTTTCCCATCGAACTACGTGGAACTTGTGTCAACACCTCCAGTACACA
GACCACACCATGTTGCAAGAAGAAGTGACAGAGAAGAACTAGAACGTAAC
GTACAACAGACGTTAGCACAGTTTGACGAAGTGTGTTCGGCCAAAAAAAT
ACCGGAACCTCGGCGACGTGAGAGAGCACCAGCTTCCCCTGATGCTGTCA
NGAACCTCGACGACGTGAGAGAGCACCAGCTTCCCCTGATGCTGTCATGT
ACCAGTCACGTGATAGTCGGGATGACGTCACTCTGGAGATGATGTGTGGT
CATCGCCGTCATTTTTATAAGGAAAAGGACAAGACAAGAGCGTGAGAAGT
ACGCCTTCTACTACGGCATGGGTTCCCGGATGTTACGTGAAGATGATGAC
CAGGAATCGGGAAGAAGTCCTCGGAGAGGGGACATGGAGAAAGGTGCTTG
TCAGGAGGTGGACTACTCTACAATAGACAGGCTCAAAAGGAAAGCAGGCG
AGCGAGGTAATAAGAAATTCGCCAGAGTTCTCTACAATTACGCACCCCAA
GACAGCGATGAGCTTAAACTGGAGGCCAATGACGTCATAGAGGTCATCAA
AGGTGAAAATGGCGGTTGGTGGTTTGGATACCTCAAAGGGAAGGTCGGAC
TTTTCCCATCGAACTACGTGGAACTTGTGTCAACACCTCCAGTACACAGA
CCACACCATGTTGCAAGAAGAAGTGACAGAGAAGAACTAGAACGTAACGT
ACAACAGACGTTAGCACAGTTTGACGAAGTGTGTTCGGCCAAAAAAATAC
CGGAACCTCGGCGACGTGAGAGAGCACCAGCTTCCCCTGATGCTGTCANG
AACCTCGACGACGTGAGAGAGCACCAGCTTCCCCTGATGCTGTCATGTAC
CAGTCACGTGATAGTCGGGATGACGTCACTCTGGAGATGATGTGTGGTCA
TCGCCGTCATTTTTATAAGGAAAAGGACAAGACAAGAGCGTGAGAAGTAC
GCCTTCTACTACGGCATGGGTTCCCGGATGTTACGTGAAGATGATGACCA
GGAATCGGGAAGAAGTCCTCGGAGAGGGGACATGGAGAAAGGTGCTTGTC
AGGAGGTGGACTACTCTACAATAGACAGGCTCAAAAGGAAAGCAGGCGAG
CGAGGTAATAAGAAATTCGCCAGAGTTCTCTACAATTACGCACCCCAAGA
CAGCGATGAGCTTAAACTGGAGGCCAATGACGTCATAGAGGTCATCAAAG
GTGAAAATGGCGGTTGGTGGTTTGGATACCTCAAAGGGAAGGTCGGACTT
TTCCCATCGAACTACGTGGAACTTGTGTCAACACCTCCAGTACACAGACC
ACACCATGTTGCAAGAAGAAGTGACAGAGAAGAACTAGAACGTAACGTAC
AACAGACGTTAGCACAGTTTGACGAAGTGTGTTCGGCCAAAAAAATACCG
GAACCTCGGCGACGTGAGAGAGCACCAGCTTCCCCTGATGCTGTCANGAA
CCTCGACGACGTGAGAGAGCACCAGCTTCCCCTGATGCTGTCATGTACCA
GTCACGTGATAGTCGGGATGACGTCACTCTGGAGATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:10272669..10279152 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96620_cuf1 |
| Biotype | protein_coding |
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