|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96616_cuf4 >transcript:BL96616_cuf4-protein ID=transcript:BL96616_cuf4-protein|Name=transcript:BL96616_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=189bp
MAYYQYKGILFPETVSKETLDAIPDYPVHDDDIFILTYPKSGTNWMMEIV
SKVMKAAGKMATPDKHVTWCFELQLPGVDEKPRHVLAMDSPSPRIIHTHL
PRQLAPKMVANPKGKVKVIVVMRNPKDVAVSFYHYFKTMETKFGRQDLKS
LESWDAFATDFLEGKGIYGDFYDHALGWWQMKDDRHFLF Run BLAST on NCBI mRNA from alignment at Sc0000000:7366912..7368755+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96616_cuf4 ID=transcript:BL96616_cuf4|Name=transcript:BL96616_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=1844bp|location=Sequence derived from alignment at Sc0000000:7366912..7368755+ (Branchiostoma lanceolatum)
GTTGAGGGACCTATCGTACTCTGACCAGTCAGCTATTCATACTGTTTGTC
CAACACCAGCAAAGCACGATATAAGATCAGCGAGAGAGATACAAGAGGTA
TGTATCATTTGTTACAAGAGCAGCTGACAATACATTGTTGCAATGTACTG
TGACTGACAGCGTTGATCCGAAACTTATCGAAAGAATATCAATGGTATTT
TCGTGCTCGAGTGACAACAGTAGGGAGGTATATTGAGTGTGACCCTGTAG
GGTACACCTGACCCTGTCGGTGTGTTGACTTTGTACCCTGTCAAACGTTG
CAGCTACAGTCATTTCAAACGTAGTATGTTTAGGCATATGGATTTCTAAC
TTTGTACTTTTCCTGAAGGAAATTAGTCAGATTGTATTGCAGCTATTCCG
GTCGACCAGGTTTTCCTGACCTCGCTGTGTACTTCCGTCATTTTGAAGGT
CATCTAAGGGTCGTCGAGCTGAGGGAGATCAACATGGCGTATTACCAGTA
CAAAGGCATTCTGTTTCCTGAAACAGTTTCTAAGGAAACCTTGGATGCGA
TTCCTGACTACCCTGTACATGATGACGACATTTTCATCCTGACATACCCA
AAATCAGGTGAGAGGTGTTCCCGTAGAGTGGCATTGTTTAGACTGTTTGA
ATTTGTCGCAGAGGGAAGGCCTTGGGGCGTTGACGGAAGGTCAGTTTGAT
CAGTCAGCAAATGTAGTTACTTACGAGGTGCGTTCAAAAGATGTGCACAT
GGAAACAACAAGCATAACTGAAAAAGGTGACTTTCGGAGCATACCCATAA
TTAGAAGTAGACCGGCTTTTATCAATATCCTCCCCCAAACCATTGTGATC
ATTATCTTCCAGACCCTGTCTTTGGTTAAATCGTTAGGAATCAAGGTTAG
TGTGGGTTTTTTTCAGGTACGAACTGGATGATGGAAATAGTGAGCAAGGT
CATGAAAGCTGCTGGAAAGATGGCGACTCCTGACAAACACGTCACGTGGT
GCTTCGAACTACAGCTGCCAGGGGTTGACGAAAAACCACGTCACGTGCTT
GCAATGGATTCTCCCTCTCCACGCATAATCCACACGCACCTACCACGGCA
ACTGGCCCCCAAAATGGTCGCCAATCCTAAAGGAAAGGTACGCTGATAGA
AATAAGACATCTTGAAACAGATTAGGTGGTTCAATATTAGATAAATGATC
AAGTCTGACTCGGTTGAAGACTTTTATTCAGTTGTTTGATTTCTTATCAT
CAAAAGGAAATGTCTTCCACCCCAATAGTTTTAGGCTTACTGTATTGTTT
TGTTTACCAACAAAGTTGTCTAGAACTGATGCAGACTATTCATGATAAGC
CCTTAGAGGTATTATATACGATAAGCTTTCTTTTCGTTGTTTCCAGGTCA
AAGTGATTGTAGTGATGAGGAACCCGAAAGACGTGGCTGTGTCGTTTTAT
CACTACTTTAAGACAATGGAAACGAAGTTCGGCCGTCAGGATTTGAAAAG
TCTGGAATCTTGGGACGCCTTTGCAACCGACTTTCTGGAGGGAAAGGGTA
AGTCAATACAAAAGAAAGACTATTTGATTTGATCACATCAAACTTTTGGG
TTCCAAGTCAATTATTGACCGTTGGTGTCTATTTCCATAATTTTAAGTGT
CAAAAAAATAGCACATCATCTTCTGGACATAACATATTACACATTGATGA
AATCAAAGTTGCTGAATTGTATTTCTATCTATTTGATATCATAAAACATG
TACTTTTTTTCTGACATGAAGGCATATATGGTGACTTCTACGACCACGCC
CTCGGCTGGTGGCAGATGAAGGATGACCGCCATTTCCTCTTCTT Coding sequence (CDS) from alignment at Sc0000000:7366912..7368755+ >transcript:BL96616_cuf4 ID=transcript:BL96616_cuf4|Name=transcript:BL96616_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=2268bp|location=Sequence derived from alignment at Sc0000000:7366912..7368755+ (Branchiostoma lanceolatum)
ATGGCGTATTACCAGTACAAAGGCATTCTGTTTCCTGAAACAGTTTCTAA
GGAAACCTTGGATGCGATTCCTGACTACCCTGTACATGATGACGACATTT
TCATCCTGACATACCCAAAATCAGGTACGAACTGGATGATGGAAATAGTG
AGCAAGGTCATGAAAGCTGCTGGAAAGATGGCGACTCCTGACAAACACGT
CACGTGGTGCTTCGAACTACAGCTGCCAGGGGTTGACGAAAAACCACGTC
ACGTGCTTGCAATGGATTCTCCCTCTCCACGCATAATCCACACGCACCTA
CCACGGCAACTGGCCCCCAAAATGGTCGCCAATCCTAAAGGAAAGGTCAA
AGTGATTGTAGTGATGAGGAACCCGAAAGACGTGGCTGTGTCGTTTTATC
ACTACTTTAAGACAATGGAAACGAAGTTCGGCCGTCAGGATTTGAAAAGT
CTGGAATCTTGGGACGCCTTTGCAACCGACTTTCTGGAGGGAAAGGGCAT
ATATGGTGACTTCTACGACCACGCCCTCGGCTGGTGGCAGATGAAGGATG
ACCGCCATTTCCTCTTCATGGCGTATTACCAGTACAAAGGCATTCTGTTT
CCTGAAACAGTTTCTAAGGAAACCTTGGATGCGATTCCTGACTACCCTGT
ACATGATGACGACATTTTCATCCTGACATACCCAAAATCAGGTACGAACT
GGATGATGGAAATAGTGAGCAAGGTCATGAAAGCTGCTGGAAAGATGGCG
ACTCCTGACAAACACGTCACGTGGTGCTTCGAACTACAGCTGCCAGGGGT
TGACGAAAAACCACGTCACGTGCTTGCAATGGATTCTCCCTCTCCACGCA
TAATCCACACGCACCTACCACGGCAACTGGCCCCCAAAATGGTCGCCAAT
CCTAAAGGAAAGGTCAAAGTGATTGTAGTGATGAGGAACCCGAAAGACGT
GGCTGTGTCGTTTTATCACTACTTTAAGACAATGGAAACGAAGTTCGGCC
GTCAGGATTTGAAAAGTCTGGAATCTTGGGACGCCTTTGCAACCGACTTT
CTGGAGGGAAAGGGCATATATGGTGACTTCTACGACCACGCCCTCGGCTG
GTGGCAGATGAAGGATGACCGCCATTTCCTCTTCATGGCGTATTACCAGT
ACAAAGGCATTCTGTTTCCTGAAACAGTTTCTAAGGAAACCTTGGATGCG
ATTCCTGACTACCCTGTACATGATGACGACATTTTCATCCTGACATACCC
AAAATCAGGTACGAACTGGATGATGGAAATAGTGAGCAAGGTCATGAAAG
CTGCTGGAAAGATGGCGACTCCTGACAAACACGTCACGTGGTGCTTCGAA
CTACAGCTGCCAGGGGTTGACGAAAAACCACGTCACGTGCTTGCAATGGA
TTCTCCCTCTCCACGCATAATCCACACGCACCTACCACGGCAACTGGCCC
CCAAAATGGTCGCCAATCCTAAAGGAAAGGTCAAAGTGATTGTAGTGATG
AGGAACCCGAAAGACGTGGCTGTGTCGTTTTATCACTACTTTAAGACAAT
GGAAACGAAGTTCGGCCGTCAGGATTTGAAAAGTCTGGAATCTTGGGACG
CCTTTGCAACCGACTTTCTGGAGGGAAAGGGCATATATGGTGACTTCTAC
GACCACGCCCTCGGCTGGTGGCAGATGAAGGATGACCGCCATTTCCTCTT
CATGGCGTATTACCAGTACAAAGGCATTCTGTTTCCTGAAACAGTTTCTA
AGGAAACCTTGGATGCGATTCCTGACTACCCTGTACATGATGACGACATT
TTCATCCTGACATACCCAAAATCAGGTACGAACTGGATGATGGAAATAGT
GAGCAAGGTCATGAAAGCTGCTGGAAAGATGGCGACTCCTGACAAACACG
TCACGTGGTGCTTCGAACTACAGCTGCCAGGGGTTGACGAAAAACCACGT
CACGTGCTTGCAATGGATTCTCCCTCTCCACGCATAATCCACACGCACCT
ACCACGGCAACTGGCCCCCAAAATGGTCGCCAATCCTAAAGGAAAGGTCA
AAGTGATTGTAGTGATGAGGAACCCGAAAGACGTGGCTGTGTCGTTTTAT
CACTACTTTAAGACAATGGAAACGAAGTTCGGCCGTCAGGATTTGAAAAG
TCTGGAATCTTGGGACGCCTTTGCAACCGACTTTCTGGAGGGAAAGGGCA
TATATGGTGACTTCTACGACCACGCCCTCGGCTGGTGGCAGATGAAGGAT
GACCGCCATTTCCTCTTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:7366912..7368755 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96616_cuf4 |
| Biotype | protein_coding |
|
