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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96612_cuf41 >transcript:BL96612_cuf41-protein ID=transcript:BL96612_cuf41-protein|Name=transcript:BL96612_cuf41|organism=Branchiostoma lanceolatum|type=polypeptide|length=197bp
RVGDQGNQWREAAIDIYNLQYNLVLEAVRGSDVRGDIAVDDVTLTEGLCN
APVTSGNTCDFETADICSYSQDSTDDFDWTRKTGSTGSGSTGPSTDHTLG
SGYYMYTEASGKQQGDVARLVSPEQTTDPSGQCLQFYYHIYGNQIGTLNV
YTQVGANLGNAIWTRSGDQENQWHFTMVDILLATNYQVTFEGVIGAG Run BLAST on NCBI mRNA from alignment at Sc0000000:3190570..3194181- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96612_cuf41 ID=transcript:BL96612_cuf41|Name=transcript:BL96612_cuf41|organism=Branchiostoma lanceolatum|type=mRNA|length=3612bp|location=Sequence derived from alignment at Sc0000000:3190570..3194181- (Branchiostoma lanceolatum)
CGGGTCGGCGACCAAGGCAACCAGTGGAGGGAGGCTGCAATAGATATCTA
CAATCTGCAGTATAATGTAGGTGCTACATCTCGTTTGGTCTTTTCTTATG
TTAGACTACTTGTCAATGAATGGGCTCCTGTTTGTCTCTTTTTCATAAGG
CAAGGCCAAGCTACATTTTGAGTTTACTTTATCGTATATTGTAGGGAAAG
GTTTTATATCCTGTAATTTGTAGCAAGATGGCCACATAGGCTTCCTAAAC
CAAACAACACAGTAACAGAAATACAAAAATAGCAACCACCCCCTCCAAAC
AATAGTACCCCTCTCCCTACCATATAAGTCCCCAATCTATTGAGATTGGC
AAGTAACAAGAAGAAATAAAGTATATATATTACTGACTTCCTGAATTTGG
CATAATGAGCACTAGGTGGTCTTACTGAGTGTAGCGTGAAGTATTGTCGG
ACCAACCTCCATTACTAATTTATTCGTTTTCACTCAGTCTTTGTTTTACT
TATTTTGATTTCATGTTTGTTTTTCTGTAAAGCTTGTGCTTGAGGCGGTG
CGAGGGTCAGATGTAAGGGGTGACATTGCTGTGGATGACGTGACTCTCAC
CGAAGGACTGTGTAATGCACCAGGTAGGTTGCCTATGACATAGAGATTCT
TCCTCTTTTTATTTTAACCTTCTCCCTGCTGCCTAACTCTGTAACCAATA
GGGAATTGGGTGCCAAACAGCTACTTCAGTATGCTGAAGTTAAGTCATCC
TCAATTAAACTGAAACATTATGCTTTGCTTCAGCTTGCATTTTCAGCCAA
AGCATGCTGGGTTAGCTCTACTCTTCTCAATAAGTGTGTTGGATTTTTTT
ACATGCAAAGGTTTCATGTCTGAGGCTGACCTCTGACCACAGTAAATCAT
GAGATTCAGATACAGATTAATGAAGCAAAGTCCTGCAATACAATATTTTC
ATTGTCAAGAATCTTGTGGGGATTGCATTCATCATTTCTGATAGTGTTAT
AAAGCAGTCAGCCATAGGTATAGGGAATCTTATGATTTACTGTGGTCAGA
GGTCTTGATTAACAGTAATAGAGTAATTAAGATTTGAAGTAGTTTGGCAT
GGTAAGTTGACTGGGGTGGTTTAAATGGAAGGACCATTGAAACGCTTTGT
AGAGGAAGTATATGTCTTTTGATGCCGTCAAACTGTGGCATAGGGCATGC
CTACATACCTGTGCTTCCTCTCTCCCCATGACAGTTACCTCTGGCAACAC
TTGTGATTTTGAGACAGCTGACATCTGTAGCTACTCCCAGGACAGCACCG
ACGACTTTGACTGGACCAGAAAGACTGGTTCTACAGGTTCTGGTAGTACA
GGACCCTCCACGGACCACACTCTTGGCTCAGGTTTTTATTTATCTATTTA
TTTATAAGACTCATCCATTACAGAAAATGGAGGGGGAGACAAAACAGGTG
ATCACTCAAGTTGTCTCCCCCTTAACAAACAAAAAGCAACATATAAGAAA
TAAGAAAACTATACAAATTACCACTTTTAACAGTACTATTTACAGTGAAA
ATGTAAGCATGTACATCATAGCATATGTGCAGGATAACAAAACAATATAA
TGACATAAAATCAGGGCATTATCTATCGAGGCCTTGTGGCTATGCAAGCA
GAACAATTACAAAAGGATGTCCACGTACACGGAGCGTCGGTAGCATAGAC
CTCTCTAAACCTGTTATGCAAGTGATTCAACAGCTGCGGTTTGAAGGCGA
GCTTGTGTTGTGGCTGAGAGACACTGTGACACAGGTTTGTCTGTTAAACA
CTTTGATCTCATAAGCTAAATCTTCAAAGCTCAATTCACAATACATGCAA
AGCTGGTGTGTTATGCCTAAGTGAAGTTAAACCTTGCCTTCAGCCACTAA
TTTTTTCTATCCCACTCATTGTTTGGAAGCCCAAGTTGTTTCATAGTTAA
ATAATTCATTTTTACCCTTTATCTTCCAAACAATACTTTTTCATCAGTTT
CCTGTCATGAAGGTCAGATTTTTGCCCACATGGGGTAAATTTTTGTTCGT
CCCAAGAAGCAAGTATCTGTCATCATAACTCAAGAAGGCCTGGATGGATT
GAATTAATAATATTTGGTATGTCGGTCGGTCTTGTTGTGTAATTTTTTGC
TACCTGACTAGTAACATTGCTGATGTTATTCCCAGGGTACTACATGTACA
CGGAGGCCTCCGGCAAACAGCAGGGAGACGTGGCCCGCCTGGTGTCCCCT
GAGCAGACCACTGACCCCAGTGGACAGTGTCTGCAGTTCTACTATCATAT
CTATGGAAACCAAATAGGTAAGTCTGCATGTCTCAATGTTTTCCTGCCAT
ATGGAAAAGGGTGATGTTCATGAAAATTAGAATAAAATGGGATATTCTTA
AACCTCCTAAGGTAATACCTGTCCTTGGTACTGAACATCATCCACACAAA
CATGACCTGTCCCTGGTACTGAACACTATTCACACAAACATGTCCTGTCC
CTGGTGCTGAACATCATCCACACAAACATGACCTGTCCATGGTGCTGAAC
ACCATCCACAACAAACAAGACCTGTCCCTGGTGCTGAACACCCTCCACAC
ATAAACAAGACCTGTCCCTGGTGCTGAACACCCTCCACACACAAACATGA
CCTGTCCCTGCGTGCGTCGGTAGCGTGCGTAGTCCAGTGGTTAGCGATCT
TGCCTCTGGAACTAGAAGCCCCGGGTTCGATCCCGGCTGTGTCACTCACC
CGACATGCACGCTACCGTTAAAGATCGCAGTCCTTAGGACGGGACGTTAA
GCTGTGGTCCACTGTTCATTGTGCTTGTCGAAAAGAGCTAGGGGAATTTC
CCCGGTACAATGAACCTGTAAATACTGTACATAGCGTCTGTCTTCTCTGT
CACGACCAGTGGAAGAGTAGCTCATCTGTTCATTGAGTTCATTTGAGCTA
AACTGGTTGGAGATCCCTTTTTCCTTTTCCTTTCCCTGGTACTGAACACC
AATTACAGAAAGTTGAAATGTTGTTATCAGTCTATAGGCTATTAAAGTAG
AGCAGTGCATAATCGAAATGTCTACTTCAGTGAGAGTTTTACCTCAAGAG
CATTATAGGCAATTGTCAATGGTACAAGCAACTTTCTACAGAACCAGACT
TTTAGCTAGGGTTCGTAGACAGGGCATAAAAAAATTGTGTTTGTGTGTGT
GTGGGAAACCAGTCGGCATCAGAGCTCCCTAACATGCTCTATGGATTAAC
AATTACCTGGTAGCCTTGCTTGTCAATCAATTTACATGCTGTGTGCTGTG
GTAGACTCCCAGGGCATCCTCTTGGTGTCCCCTGAAGAATTAGGGCATCT
AATTTTGTTGTTTTATTGGTGTATCTAAAAGACACCTGAAACCCCTGCTA
GCTAATAGCCCGTCCAGAACTGTTTTTTCAAGACTCTGTTTTGTCTTTCT
CTTCCAGGGACGCTGAACGTCTATACCCAGGTTGGAGCTAATCTAGGTAA
CGCTATATGGACAAGGTCCGGAGACCAGGAGAACCAGTGGCATTTTACCA
TGGTGGACATCCTCCTAGCCACCAACTACCAGGTCACGTTTGAGGGCGTC
ATCGGTGCCGGG Coding sequence (CDS) from alignment at Sc0000000:3190570..3194181- >transcript:BL96612_cuf41 ID=transcript:BL96612_cuf41|Name=transcript:BL96612_cuf41|organism=Branchiostoma lanceolatum|type=CDS|length=2955bp|location=Sequence derived from alignment at Sc0000000:3190570..3194181- (Branchiostoma lanceolatum)
CGGGTCGGCGACCAAGGCAACCAGTGGAGGGAGGCTGCAATAGATATCTA
CAATCTGCAGTATAATCTTGTGCTTGAGGCGGTGCGAGGGTCAGATGTAA
GGGGTGACATTGCTGTGGATGACGTGACTCTCACCGAAGGACTGTGTAAT
GCACCAGTTACCTCTGGCAACACTTGTGATTTTGAGACAGCTGACATCTG
TAGCTACTCCCAGGACAGCACCGACGACTTTGACTGGACCAGAAAGACTG
GTTCTACAGGTTCTGGTAGTACAGGACCCTCCACGGACCACACTCTTGGC
TCAGGGTACTACATGTACACGGAGGCCTCCGGCAAACAGCAGGGAGACGT
GGCCCGCCTGGTGTCCCCTGAGCAGACCACTGACCCCAGTGGACAGTGTC
TGCAGTTCTACTATCATATCTATGGAAACCAAATAGGGACGCTGAACGTC
TATACCCAGGTTGGAGCTAATCTAGGTAACGCTATATGGACAAGGTCCGG
AGACCAGGAGAACCAGTGGCATTTTACCATGGTGGACATCCTCCTAGCCA
CCAACTACCAGGTCACGTTTGAGGGCGTCATCGGTGCCGGGCGGGTCGGC
GACCAAGGCAACCAGTGGAGGGAGGCTGCAATAGATATCTACAATCTGCA
GTATAATCTTGTGCTTGAGGCGGTGCGAGGGTCAGATGTAAGGGGTGACA
TTGCTGTGGATGACGTGACTCTCACCGAAGGACTGTGTAATGCACCAGTT
ACCTCTGGCAACACTTGTGATTTTGAGACAGCTGACATCTGTAGCTACTC
CCAGGACAGCACCGACGACTTTGACTGGACCAGAAAGACTGGTTCTACAG
GTTCTGGTAGTACAGGACCCTCCACGGACCACACTCTTGGCTCAGGGTAC
TACATGTACACGGAGGCCTCCGGCAAACAGCAGGGAGACGTGGCCCGCCT
GGTGTCCCCTGAGCAGACCACTGACCCCAGTGGACAGTGTCTGCAGTTCT
ACTATCATATCTATGGAAACCAAATAGGGACGCTGAACGTCTATACCCAG
GTTGGAGCTAATCTAGGTAACGCTATATGGACAAGGTCCGGAGACCAGGA
GAACCAGTGGCATTTTACCATGGTGGACATCCTCCTAGCCACCAACTACC
AGGTCACGTTTGAGGGCGTCATCGGTGCCGGGCGGGTCGGCGACCAAGGC
AACCAGTGGAGGGAGGCTGCAATAGATATCTACAATCTGCAGTATAATCT
TGTGCTTGAGGCGGTGCGAGGGTCAGATGTAAGGGGTGACATTGCTGTGG
ATGACGTGACTCTCACCGAAGGACTGTGTAATGCACCAGTTACCTCTGGC
AACACTTGTGATTTTGAGACAGCTGACATCTGTAGCTACTCCCAGGACAG
CACCGACGACTTTGACTGGACCAGAAAGACTGGTTCTACAGGTTCTGGTA
GTACAGGACCCTCCACGGACCACACTCTTGGCTCAGGGTACTACATGTAC
ACGGAGGCCTCCGGCAAACAGCAGGGAGACGTGGCCCGCCTGGTGTCCCC
TGAGCAGACCACTGACCCCAGTGGACAGTGTCTGCAGTTCTACTATCATA
TCTATGGAAACCAAATAGGGACGCTGAACGTCTATACCCAGGTTGGAGCT
AATCTAGGTAACGCTATATGGACAAGGTCCGGAGACCAGGAGAACCAGTG
GCATTTTACCATGGTGGACATCCTCCTAGCCACCAACTACCAGGTCACGT
TTGAGGGCGTCATCGGTGCCGGGCGGGTCGGCGACCAAGGCAACCAGTGG
AGGGAGGCTGCAATAGATATCTACAATCTGCAGTATAATCTTGTGCTTGA
GGCGGTGCGAGGGTCAGATGTAAGGGGTGACATTGCTGTGGATGACGTGA
CTCTCACCGAAGGACTGTGTAATGCACCAGTTACCTCTGGCAACACTTGT
GATTTTGAGACAGCTGACATCTGTAGCTACTCCCAGGACAGCACCGACGA
CTTTGACTGGACCAGAAAGACTGGTTCTACAGGTTCTGGTAGTACAGGAC
CCTCCACGGACCACACTCTTGGCTCAGGGTACTACATGTACACGGAGGCC
TCCGGCAAACAGCAGGGAGACGTGGCCCGCCTGGTGTCCCCTGAGCAGAC
CACTGACCCCAGTGGACAGTGTCTGCAGTTCTACTATCATATCTATGGAA
ACCAAATAGGGACGCTGAACGTCTATACCCAGGTTGGAGCTAATCTAGGT
AACGCTATATGGACAAGGTCCGGAGACCAGGAGAACCAGTGGCATTTTAC
CATGGTGGACATCCTCCTAGCCACCAACTACCAGGTCACGTTTGAGGGCG
TCATCGGTGCCGGGCGGGTCGGCGACCAAGGCAACCAGTGGAGGGAGGCT
GCAATAGATATCTACAATCTGCAGTATAATCTTGTGCTTGAGGCGGTGCG
AGGGTCAGATGTAAGGGGTGACATTGCTGTGGATGACGTGACTCTCACCG
AAGGACTGTGTAATGCACCAGTTACCTCTGGCAACACTTGTGATTTTGAG
ACAGCTGACATCTGTAGCTACTCCCAGGACAGCACCGACGACTTTGACTG
GACCAGAAAGACTGGTTCTACAGGTTCTGGTAGTACAGGACCCTCCACGG
ACCACACTCTTGGCTCAGGGTACTACATGTACACGGAGGCCTCCGGCAAA
CAGCAGGGAGACGTGGCCCGCCTGGTGTCCCCTGAGCAGACCACTGACCC
CAGTGGACAGTGTCTGCAGTTCTACTATCATATCTATGGAAACCAAATAG
GGACGCTGAACGTCTATACCCAGGTTGGAGCTAATCTAGGTAACGCTATA
TGGACAAGGTCCGGAGACCAGGAGAACCAGTGGCATTTTACCATGGTGGA
CATCCTCCTAGCCACCAACTACCAGGTCACGTTTGAGGGCGTCATCGGTG
CCGGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:3190570..3194181 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96612_cuf41 |
| Biotype | protein_coding |
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