transcript:BL96599_cuf22 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96599_cuf22
Unique Nametranscript:BL96599_cuf22
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96599_cuf22

>transcript:BL96599_cuf22-protein ID=transcript:BL96599_cuf22-protein|Name=transcript:BL96599_cuf22|organism=Branchiostoma lanceolatum|type=polypeptide|length=217bp
EQGLCSWSNAGPITDQFDWLRNQGGTPSSVTGPAVDHTTNTDQGFYMFTE
VSDTSLAQGDRAILWSEHFPAATDSCFSLWYHMYGTNVGALYVQKYTQGA
FQPVWDIQGQVGNVWQFANISLSSNTEFQITVIGEKGNGYTGDIAVDDLN
YQEVSCGAVTTPAPTTTPGPSQAPSSFDCNFETDLCTWTQSATDDFNWSW
QQGSTATSNTGPEFDHT
Run BLAST on NCBI

mRNA from alignment at Sc0000000:3110144..3112291-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96599_cuf22 ID=transcript:BL96599_cuf22|Name=transcript:BL96599_cuf22|organism=Branchiostoma lanceolatum|type=mRNA|length=2148bp|location=Sequence derived from alignment at Sc0000000:3110144..3112291- (Branchiostoma lanceolatum)
TGAGCAGGGACTCTGCAGTTGGTCAAATGCTGGACCAATCACAGACCAGT
TTGACTGGCTGCGTAACCAGGGTGGCACACCGAGCTCTGTTACAGGCCCG
GCTGTGGACCACACCACTAACACAGATCAGGGTAAGTGCTGGTGCTGTGC
CCTGTCTCTTCTTCCATAAGCAATGAGGAAAGGGCTTAATCTTTCCATAA
AGCAGGGGTGTCTCCAGGACCTGTCCTTCCGTCCCAGGACGCAAATTTGC
TTCTTGGGATGGAAAAAAATTCAACCCTTTCCTTTCATGAGATAAAACTG
ATGAAAATGTATTTGAATGAATAAGGTCAAGGGATAACATTTTTCTTCGG
GTTTTTACATGTTTACTGTTTTTCAAAGTGGTAAAATTATGTAACCCAGC
AGATTAATGTTAATGCAGGTTACTTCTCATTTTATGTCAACAAGGTTTTT
AAAATGTTATAATGACTTTTGTTTGCAGGTTTCTATATGTTTACGGAGGT
GAGCGACACGTCGCTGGCTCAGGGAGACCGGGCCATCCTGTGGAGCGAGC
ACTTCCCAGCTGCAACTGACTCCTGCTTCTCCCTCTGGTACCATATGTAT
GGAACAAGTAAGGACAATGCACTTATCATCATCATCATGTTTCATACTCT
TTACAAATTGGAGCGTATACATAGCTTAGCCTCCAGGATTAACTATTGTA
CATCATTTTAGTCAAGTCTTGTGTGTGGGTGGTGTTCAACACCAAGGACA
GGACCAGGTGTGTTTGCTTGTGTATGTGTTTGGTATTCAGCACCAGGGAC
AGGTGTGTTTGGTTATGTGTGTATGGTGTCCACCACCAGAGACAGGTATA
TTTGTGACTGTGTGAATGGTGGTCATCACCAAGGACAGGAGCGTTTTCCT
GTGTGTGGATGGTGTTCAGCACCAAGGACAGGTGTGTGTGTGTGGATGGT
GTTCAGCCTCAGGGACAGATGTGTTTTTGTGTTCAGTACCAGTTCATGTG
GCTTGTGGTTGTGATAAACATGTCTGTCTTCAATTCCAACTTAACTTAAT
CTTAATTGTATAAACACTTATATATAGTTTGTTGGTAATACCTAATCTAT
CTATTACATTTTATAGACGTTGGAGCACTCTATGTGCAGAAGTACACCCA
GGGTGCCTTCCAGCCAGTATGGGACATCCAGGGACAGGTGGGTATTTTTT
TCCTATTGGAATCTCTAAAATTGTCTTCACTTTATTTGCATGTGAGCTCA
TAGTTCATGCTTAAAACCCTGCTGATCGTCAAATCTTGCTCACTGACGAA
AGATATTGGATGCTACTTAAAATATCTGACCATTTCCAAAGTCATTACCA
GTTGCTTGTTCACTAAATACAATGTGAATACATTCAACATAATCTAAATT
TACATTTGTACACAGCATGAGTTTCACTGCTTCTGCAGGCAGGTTGTAAC
AATGTTCTGTTACACTTAATAAAGTTAAACATGATTTTCTCAATGAAAAT
CTATAGTAAAATGGGGCAACTTTTGCAAAATTTGTCATACAGGTGGGTAA
CGTCTGGCAGTTCGCCAACATCAGCCTCAGCAGCAACACAGAGTTCCAGA
TCACCGTCATTGGGGAGAAGGGCAACGGCTACACGGGAGACATCGCGGTG
GACGACCTGAACTATCAGGAGGTGTCATGTGGTGCGGTCACGACCCCTGC
TCCTACCACCACCCCAGGACCATCACAAGGTGAGATCCCAAACTTTTTGT
TTATGTTTTTATTTTAGATCAACAGATACACTTACGATACAAAACGTGGG
TCTCTTCATTTTCCACTGCCTTCAAAAAAGAAGTCAAACTCAACCATAGT
CAACCATAGTTAACATAGAACTTTGAATTCACAGTAGACTAGACAACTTT
TTCGATTTCCATGTATCTCCATGTACTCGTTTGTCTGCAATTAGCCATCG
GGCATGAACTTGCAATAAAGTTATTATTATTATGTATTATTGTACTTTTT
CTTAAACTGCAGCGCCAAGCAGTTTTGACTGTAACTTTGAGACAGACCTG
TGTACCTGGACCCAGTCTGCCACAGATGACTTCAACTGGAGCTGGCAACA
GGGTAGCACAGCAACGAGCAATACCGGACCTGAGTTTGATCACACTCT

Coding sequence (CDS) from alignment at Sc0000000:3110144..3112291-

>transcript:BL96599_cuf22 ID=transcript:BL96599_cuf22|Name=transcript:BL96599_cuf22|organism=Branchiostoma lanceolatum|type=CDS|length=3255bp|location=Sequence derived from alignment at Sc0000000:3110144..3112291- (Branchiostoma lanceolatum)
GAGCAGGGACTCTGCAGTTGGTCAAATGCTGGACCAATCACAGACCAGTT
TGACTGGCTGCGTAACCAGGGTGGCACACCGAGCTCTGTTACAGGCCCGG
CTGTGGACCACACCACTAACACAGATCAGGGTTTCTATATGTTTACGGAG
GTGAGCGACACGTCGCTGGCTCAGGGAGACCGGGCCATCCTGTGGAGCGA
GCACTTCCCAGCTGCAACTGACTCCTGCTTCTCCCTCTGGTACCATATGT
ATGGAACAAACGTTGGAGCACTCTATGTGCAGAAGTACACCCAGGGTGCC
TTCCAGCCAGTATGGGACATCCAGGGACAGGTGGGTAACGTCTGGCAGTT
CGCCAACATCAGCCTCAGCAGCAACACAGAGTTCCAGATCACCGTCATTG
GGGAGAAGGGCAACGGCTACACGGGAGACATCGCGGTGGACGACCTGAAC
TATCAGGAGGTGTCATGTGGTGCGGTCACGACCCCTGCTCCTACCACCAC
CCCAGGACCATCACAAGCGCCAAGCAGTTTTGACTGTAACTTTGAGACAG
ACCTGTGTACCTGGACCCAGTCTGCCACAGATGACTTCAACTGGAGCTGG
CAACAGGGTAGCACAGCAACGAGCAATACCGGACCTGAGTTTGATCACAC
TGAGCAGGGACTCTGCAGTTGGTCAAATGCTGGACCAATCACAGACCAGT
TTGACTGGCTGCGTAACCAGGGTGGCACACCGAGCTCTGTTACAGGCCCG
GCTGTGGACCACACCACTAACACAGATCAGGGTTTCTATATGTTTACGGA
GGTGAGCGACACGTCGCTGGCTCAGGGAGACCGGGCCATCCTGTGGAGCG
AGCACTTCCCAGCTGCAACTGACTCCTGCTTCTCCCTCTGGTACCATATG
TATGGAACAAACGTTGGAGCACTCTATGTGCAGAAGTACACCCAGGGTGC
CTTCCAGCCAGTATGGGACATCCAGGGACAGGTGGGTAACGTCTGGCAGT
TCGCCAACATCAGCCTCAGCAGCAACACAGAGTTCCAGATCACCGTCATT
GGGGAGAAGGGCAACGGCTACACGGGAGACATCGCGGTGGACGACCTGAA
CTATCAGGAGGTGTCATGTGGTGCGGTCACGACCCCTGCTCCTACCACCA
CCCCAGGACCATCACAAGCGCCAAGCAGTTTTGACTGTAACTTTGAGACA
GACCTGTGTACCTGGACCCAGTCTGCCACAGATGACTTCAACTGGAGCTG
GCAACAGGGTAGCACAGCAACGAGCAATACCGGACCTGAGTTTGATCACA
CTGAGCAGGGACTCTGCAGTTGGTCAAATGCTGGACCAATCACAGACCAG
TTTGACTGGCTGCGTAACCAGGGTGGCACACCGAGCTCTGTTACAGGCCC
GGCTGTGGACCACACCACTAACACAGATCAGGGTTTCTATATGTTTACGG
AGGTGAGCGACACGTCGCTGGCTCAGGGAGACCGGGCCATCCTGTGGAGC
GAGCACTTCCCAGCTGCAACTGACTCCTGCTTCTCCCTCTGGTACCATAT
GTATGGAACAAACGTTGGAGCACTCTATGTGCAGAAGTACACCCAGGGTG
CCTTCCAGCCAGTATGGGACATCCAGGGACAGGTGGGTAACGTCTGGCAG
TTCGCCAACATCAGCCTCAGCAGCAACACAGAGTTCCAGATCACCGTCAT
TGGGGAGAAGGGCAACGGCTACACGGGAGACATCGCGGTGGACGACCTGA
ACTATCAGGAGGTGTCATGTGGTGCGGTCACGACCCCTGCTCCTACCACC
ACCCCAGGACCATCACAAGCGCCAAGCAGTTTTGACTGTAACTTTGAGAC
AGACCTGTGTACCTGGACCCAGTCTGCCACAGATGACTTCAACTGGAGCT
GGCAACAGGGTAGCACAGCAACGAGCAATACCGGACCTGAGTTTGATCAC
ACTGAGCAGGGACTCTGCAGTTGGTCAAATGCTGGACCAATCACAGACCA
GTTTGACTGGCTGCGTAACCAGGGTGGCACACCGAGCTCTGTTACAGGCC
CGGCTGTGGACCACACCACTAACACAGATCAGGGTTTCTATATGTTTACG
GAGGTGAGCGACACGTCGCTGGCTCAGGGAGACCGGGCCATCCTGTGGAG
CGAGCACTTCCCAGCTGCAACTGACTCCTGCTTCTCCCTCTGGTACCATA
TGTATGGAACAAACGTTGGAGCACTCTATGTGCAGAAGTACACCCAGGGT
GCCTTCCAGCCAGTATGGGACATCCAGGGACAGGTGGGTAACGTCTGGCA
GTTCGCCAACATCAGCCTCAGCAGCAACACAGAGTTCCAGATCACCGTCA
TTGGGGAGAAGGGCAACGGCTACACGGGAGACATCGCGGTGGACGACCTG
AACTATCAGGAGGTGTCATGTGGTGCGGTCACGACCCCTGCTCCTACCAC
CACCCCAGGACCATCACAAGCGCCAAGCAGTTTTGACTGTAACTTTGAGA
CAGACCTGTGTACCTGGACCCAGTCTGCCACAGATGACTTCAACTGGAGC
TGGCAACAGGGTAGCACAGCAACGAGCAATACCGGACCTGAGTTTGATCA
CACTGAGCAGGGACTCTGCAGTTGGTCAAATGCTGGACCAATCACAGACC
AGTTTGACTGGCTGCGTAACCAGGGTGGCACACCGAGCTCTGTTACAGGC
CCGGCTGTGGACCACACCACTAACACAGATCAGGGTTTCTATATGTTTAC
GGAGGTGAGCGACACGTCGCTGGCTCAGGGAGACCGGGCCATCCTGTGGA
GCGAGCACTTCCCAGCTGCAACTGACTCCTGCTTCTCCCTCTGGTACCAT
ATGTATGGAACAAACGTTGGAGCACTCTATGTGCAGAAGTACACCCAGGG
TGCCTTCCAGCCAGTATGGGACATCCAGGGACAGGTGGGTAACGTCTGGC
AGTTCGCCAACATCAGCCTCAGCAGCAACACAGAGTTCCAGATCACCGTC
ATTGGGGAGAAGGGCAACGGCTACACGGGAGACATCGCGGTGGACGACCT
GAACTATCAGGAGGTGTCATGTGGTGCGGTCACGACCCCTGCTCCTACCA
CCACCCCAGGACCATCACAAGCGCCAAGCAGTTTTGACTGTAACTTTGAG
ACAGACCTGTGTACCTGGACCCAGTCTGCCACAGATGACTTCAACTGGAG
CTGGCAACAGGGTAGCACAGCAACGAGCAATACCGGACCTGAGTTTGATC
ACACT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96599gene:BL96599Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96599_cuf22transcript:BL96599_cuf22-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96599_cuf22-E1BL96599_cuf22-E1-1564476830-12269Branchiostoma lanceolatumexon
BL96599_cuf22-E2BL96599_cuf22-E2-1564476830-12266Branchiostoma lanceolatumexon
BL96599_cuf22-E3BL96599_cuf22-E3-1564476830-12264Branchiostoma lanceolatumexon
BL96599_cuf22-E4BL96599_cuf22-E4-1564476830-12262Branchiostoma lanceolatumexon
BL96599_cuf22-E5BL96599_cuf22-E5-1564476830-12260Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3110144..3112291 -
Properties
Property NameValue
Transcript idBL96599_cuf22
Biotypeprotein_coding