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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96597_cuf19 >transcript:BL96597_cuf19-protein ID=transcript:BL96597_cuf19-protein|Name=transcript:BL96597_cuf19|organism=Branchiostoma lanceolatum|type=polypeptide|length=281bp
TQSGSVSDLWILGTVNVPTASTFQPVFEAVRGFSFRGDIGLDDIQVLDGP CSSGFDVSCDFEDATVCGYTQSGTDDFDWTWQSGDTPTSNSGPTNDHTYG TGAGHYFYVEASSPRQPGETAVLYSSLIPATPGRCLEFYYHMYGNSIGTL NVYSNGINGPSVWSMSGDQGNVWHQAQVSVSNTAAFQLSFEGVIGTSFRG DIAIDDVTLKGYDCSTAGNCNFENGLCTWTNNGPDDDFDWLIGRGGTNSQ FTGPSVDHTLGTDQGLYVFVETSNPRVPGDV Run BLAST on NCBI mRNA from alignment at Sc0000000:3125156..3129796- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96597_cuf19 ID=transcript:BL96597_cuf19|Name=transcript:BL96597_cuf19|organism=Branchiostoma lanceolatum|type=mRNA|length=4641bp|location=Sequence derived from alignment at Sc0000000:3125156..3129796- (Branchiostoma lanceolatum) GGACCCAGTCTGGCAGCGTAAGTGACCTCTGGATCCTGGGGACAGTGAAC
GTCCCCACCGCCTCCACCTTCCAGCCTGTGTTTGAGGCCGTCAGGGGATT
CAGTTTCCGTGGAGACATCGGTCTGGACGACATACAGGTGTTGGATGGGC
CCTGCTCATCTGGCTTTGGTAACAACTGACAAATTTTCCTTCTTCAATTT
ATGATAAAGATGGGCTTTGGGGGACATTCAATCTTCTAAGAATATTTAAA
GATATGCTGCAGACTGTATTTGTCTATTATTCAACATGACAAGCTTACCG
CAACCATCGGGAAAAAAAATTAAGAACATTGATCTGGATGACATACAGGT
GTTGGATGGACCCTGCTCATCTGGCTTTGGTAACAATTGACAAATTTTTC
TTGTTCATTTTATGAAAGAGATGGGCTATGAAGGACTAACCAGCATTCAG
GCAATCTTGTAAGAATATTTAAAGATATGCTGCAGATTGTATTTGTCTAT
AATTCAACATGGCAAGCTTAAGGCAACCATCAAGAACGAAATTAAAACAG
TCTGTGCTTCAGTGAGTGGTGGGTGAGAGTGTTAAGCAGTTTAGAACATC
AAATCAACCAACTTGCTTTCCAAGATTATTAGTTAATCACAATCAAGGAC
TTACATGTATCTATCCCGATAAAGGCGACAGTGGTTGTTGAAAATTTGAT
CCTTGAAGTTGTGTACCCTTTGTGTTGGAAGAAAGTTTAGCATTGTACTA
ACATTGTTGTTGCTGCTCTTAGATGTGTCCTGTGACTTTGAAGATGCTAC
GGTCTGCGGATACACACAGAGTGGAACAGACGACTTTGACTGGACGTGGC
AGAGTGGGGACACTCCCACCTCCAACAGTGGACCAACAAACGACCATACT
TATGGCACTGGAGCTGGTAAGGCTAGGTCTTTTTTCATGCTGCAAAAATT
AGGAAAACATTGTAACTGTAATGCTATTTGGCACATAGAAGTATGCAGTG
ATAGAAGAATCTATTTCAATTTCTTGACTTAACTTCCAAGTCTGAACAAA
ACTTTTTATATAATGATAATAAGAAGAGTAAGTACTATACTACTAATGTC
AGTCAGACTAGGACTAGGACACATACTGTGCAGACAAAGATTACAAAACA
AAAGGTGCATAAAATAATCATTCAACAGTCAAAACACACAGCTCAATAGT
TCAAGAAACAGTTCAGAGTTCAGTGTTGAGATAGTAGAAGTCTATTTTGC
TTCCAGTGGTTGCATCATATATCTCATGTACTGTATTTTAGGAGGGGGGT
GTCCTTGTGGTGTAGTGGTCTGCGCTTCTGTTACTTGCGACATCTGGTTC
AAATTACTTGGACCAGAAGGCCCGGGTTCAAGCCCCGGGTAGGACACCTC
TGGTGAAGAGGCGCATTAAGTCTTACCAAAGACTTTATAAAAATGGTACA
TACTTCTGAAACAGTATGGAAGTTAAACACACTCCACTGCCAGTGGACTA
GCCCCCTGCTGCAGTGATTGCACCACAGTGTGGCCCAGGGCTATGAAACG
GAGATGGGCACCGCCCTATACATCTTATGGTGTGGGAGGATTTTAACTTT
AACTAACTGTATTTTAGGACACTACTTTTACGTTGAGGCCTCCAGCCCCA
GACAGCCAGGGGAAACAGCAGTTCTGTACAGTAGCCTCATCCCCGCCACT
CCAGGCCGCTGCCTAGAGTTCTACTACCACATGTACGGGAACAGCATCGG
TAAGTACTTATTGACCTTCTCCCTGCTGCCTAATTCTGTAACCAATATAG
AGAATTGGGTGCCAAATGGCTACTTCAGTGCTAATTTTGATATGACATAT
ATCTGCAGAACGTTATCTTCCTTTTGAAATCATCCAACCCACTCATCATT
GAAAGCTTGGGGCTTTTTATTTTCCACTGCTTTCAAAGAATAAGTCAAAC
CCTAAGTAAAGTAGACTTCTTAGAATCTCAGTCTAATCTTAATTGTCTGT
TTCATTGGTCAATGTTTTATGATTTGCTTTATGCTTGTACTCTATCATCC
CTTGCAATTAGACTACAGGCATATGAATTATTTTGCAATTTTCAATAATC
TTGTTATAATGACAATGATAAAAGCTTTTATGTGTCGTGGTGGATGTGGC
ATTTTATTTGGTACACCTTTGAAAAATTGAAGATACGACAAAAAGTGTTC
CCCTAATCAGGGATCTCCCCAGAAATATAGAGCAGGATGGGGGGAGGGTG
CCAGGCACAGGATATGTGTGGCGAGGGGGAGGTATGGAGGGGGGCGCACA
CCTCTCAAAAGGAGAGAGACTGTTGCATTTTGCCTTTTTCAGACATAATG
GAAGTCCTTTCCTGAAATTTCTAGTTTTGAGCAAACTTACAGGCTTTGCT
GGGTAAAAATTGGAAAAAATACCCTAACTTTGAAAATGAACAGGATGGAG
CTGGGATTAGAACAGGATGGAGGAGCGCCACTGTACCATTCTTTAGGGAG
ATCCCTGCCTAATGACGAACTTAGTTACTTGGTCTTTGTACAGAGTTTAA
GCTTGTTATTCTATGATATAGCCTGACGATTCTTAATGCTCTTTCTTCCA
GGCACCCTGAATGTGTACTCCAACGGCATCAATGGTCCCAGTGTGTGGAG
CATGTCGGGTGACCAGGGTAACGTGTGGCACCAAGCTCAGGTCAGCGTCA
GCAACACTGCAGCCTTCCAAGTAAGTCCCAACTTTTCATGTACATTAAAT
CCAACATACACTGTCTATGGCTGGGATTACACACGTTTTTGAAGTTGACT
CCAAGTCAACTTGGAGTCAACTTAGACCCACTGAGTCGACCCCATATCGA
TTCAAAAACGTGTGTGTAAACCCAGGCTATGTCTATTAATATTCTCTTGA
AAAGTTCATAATTAAAGCCAAAGCTGTTGCTGTAAAATTTTGTCAAACTT
TTTCAGTCTCATCGTCATTTCAATCTACACACTTAATTTCTGATTGTGAA
ATGTTTAACTAAACTGCAATTTTAATTAGTAGATGTTAGACCTTATATCA
GATATGGGGTTATATGAAACTACTTTTAAGAGTTTTCGTGTTAGTTAAGG
TGATTGTAAGTTTTTACAGTGCATGTCTTACCATATATTCCTGTACGTTG
TAAATGTACACATATGCTGTTCTTGATATATATGTTTAGGTAGTGACACC
AGGCAGAGCTACAATAACTGTGATTGTAAAATCATAAAATATGAACGGAG
ATGTTGATAAAAAGACAAATTTTTATCCTTTACTTTCCAGCTTTCGTTTG
AAGGAGTCATTGGCACCAGCTTCCGAGGTGACATTGCTATTGATGACGTG
ACCTTGAAGGGATATGATTGTTCCACGGCCGGTAAGCTAGTGACCTTGAC
CAAATAAAAAACAATGCCATGATCTTTTCTCTTAATCATTGCAAAGCTGG
TGTGTTATAACATAAAGCGCTATGCATATTATGTACATGAATATATTAAA
CTGGAGTGTTAGACATGTAGATACACAATCTCAATGTACTATAATATTAT
TATCTGCTGCTACTGTGATACATGAACCTAAATGTGTTCGCTCAGCTATA
TTCAAATGACCCATCAGTAAAATAACCAAAAGAGCTATCTATTGTCAAAT
AGCATAACGCCAGTGATTATTTTTGGTTCATCTTGGCATTATCAATTGTG
TACAGCTGTCCCACTTTCTTTTATATGTTAACGTTTTATATCAAAGATAC
CAAAACTAATGATAAGCCCCAAGTAACACTTAGTCTATATCAAAGACTTA
GTAATTAGGAAGTTCAGTTTTATTGTTAAGTTTTATTCTATACCTCTATG
ATAGTTGTTGCCATACATTGTACCATGTACAATTGTTGTGCAATAAAGTT
CTTCTATCAAACTCCTTGCAGGCAACTGTAACTTTGAGAATGGATTGTGC
ACATGGACCAACAATGGGCCTGACGATGACTTTGACTGGCTGATAGGACG
GGGTGGAACCAACAGTCAGTTCACTGGACCATCTGTGGATCATACGCTCG
GCACAGATCAAGGTGAGGGGGAACAACAGTGTTATTTGTTATTGTGGAGA
CTTATCAATTTTTCTACAGGTGTGTAAAGAAGGTTTTCATGTTGTTTTCA
GTCATGCTGTTGCACAAAAGCACATATTCACACTGAAGAGGCACCAGGAA
AAATGCAAAAATTAAACCACCACGAATATTTCAAAATTTACAGTATTTCC
GTTGACTAGGCTCAAAGATAGCAATGTCAAGGATTGGTTTTGATTCTAGG
CTTCTAGATATCCTTCCACCCTGGAAACAATTGCCATCTAGTAGTCAGTT
AAGAGTCAAATATTATATTGACTGCACCCTGACACAAAATAAGATGTGGT
TTTGGTTAAAACAGGTTATAGTATTTTCTGAAGGAACTGCTTGCAACCTG
TTTTAGAAACTGAATAAATGGAACCCTGTTTTTAACTTGAGAGCCAAAAA
CTTTTTCTGATAGGGTGACCAGACTGGTTTTCCAATGTTGTCACTTTATA
ATGATCTGGAATGAAATAAGTTAATGTGCCTTGTTGTAGGACTTTATGTA
TTCGTGGAGACGTCCAACCCAAGAGTACCGGGTGACGTGGC Coding sequence (CDS) from alignment at Sc0000000:3125156..3129796- >transcript:BL96597_cuf19 ID=transcript:BL96597_cuf19|Name=transcript:BL96597_cuf19|organism=Branchiostoma lanceolatum|type=CDS|length=5901bp|location=Sequence derived from alignment at Sc0000000:3125156..3129796- (Branchiostoma lanceolatum) ACCCAGTCTGGCAGCGTAAGTGACCTCTGGATCCTGGGGACAGTGAACGT CCCCACCGCCTCCACCTTCCAGCCTGTGTTTGAGGCCGTCAGGGGATTCA GTTTCCGTGGAGACATCGGTCTGGACGACATACAGGTGTTGGATGGGCCC TGCTCATCTGGCTTTGATGTGTCCTGTGACTTTGAAGATGCTACGGTCTG CGGATACACACAGAGTGGAACAGACGACTTTGACTGGACGTGGCAGAGTG GGGACACTCCCACCTCCAACAGTGGACCAACAAACGACCATACTTATGGC ACTGGAGCTGGACACTACTTTTACGTTGAGGCCTCCAGCCCCAGACAGCC AGGGGAAACAGCAGTTCTGTACAGTAGCCTCATCCCCGCCACTCCAGGCC GCTGCCTAGAGTTCTACTACCACATGTACGGGAACAGCATCGGCACCCTG AATGTGTACTCCAACGGCATCAATGGTCCCAGTGTGTGGAGCATGTCGGG TGACCAGGGTAACGTGTGGCACCAAGCTCAGGTCAGCGTCAGCAACACTG CAGCCTTCCAACTTTCGTTTGAAGGAGTCATTGGCACCAGCTTCCGAGGT GACATTGCTATTGATGACGTGACCTTGAAGGGATATGATTGTTCCACGGC CGGCAACTGTAACTTTGAGAATGGATTGTGCACATGGACCAACAATGGGC CTGACGATGACTTTGACTGGCTGATAGGACGGGGTGGAACCAACAGTCAG TTCACTGGACCATCTGTGGATCATACGCTCGGCACAGATCAAGGACTTTA TGTATTCGTGGAGACGTCCAACCCAAGAGTACCGGGTGACGTGACCCAGT CTGGCAGCGTAAGTGACCTCTGGATCCTGGGGACAGTGAACGTCCCCACC GCCTCCACCTTCCAGCCTGTGTTTGAGGCCGTCAGGGGATTCAGTTTCCG TGGAGACATCGGTCTGGACGACATACAGGTGTTGGATGGGCCCTGCTCAT CTGGCTTTGATGTGTCCTGTGACTTTGAAGATGCTACGGTCTGCGGATAC ACACAGAGTGGAACAGACGACTTTGACTGGACGTGGCAGAGTGGGGACAC TCCCACCTCCAACAGTGGACCAACAAACGACCATACTTATGGCACTGGAG CTGGACACTACTTTTACGTTGAGGCCTCCAGCCCCAGACAGCCAGGGGAA ACAGCAGTTCTGTACAGTAGCCTCATCCCCGCCACTCCAGGCCGCTGCCT AGAGTTCTACTACCACATGTACGGGAACAGCATCGGCACCCTGAATGTGT ACTCCAACGGCATCAATGGTCCCAGTGTGTGGAGCATGTCGGGTGACCAG GGTAACGTGTGGCACCAAGCTCAGGTCAGCGTCAGCAACACTGCAGCCTT CCAACTTTCGTTTGAAGGAGTCATTGGCACCAGCTTCCGAGGTGACATTG CTATTGATGACGTGACCTTGAAGGGATATGATTGTTCCACGGCCGGCAAC TGTAACTTTGAGAATGGATTGTGCACATGGACCAACAATGGGCCTGACGA TGACTTTGACTGGCTGATAGGACGGGGTGGAACCAACAGTCAGTTCACTG GACCATCTGTGGATCATACGCTCGGCACAGATCAAGGACTTTATGTATTC GTGGAGACGTCCAACCCAAGAGTACCGGGTGACGTGACCCAGTCTGGCAG CGTAAGTGACCTCTGGATCCTGGGGACAGTGAACGTCCCCACCGCCTCCA CCTTCCAGCCTGTGTTTGAGGCCGTCAGGGGATTCAGTTTCCGTGGAGAC ATCGGTCTGGACGACATACAGGTGTTGGATGGGCCCTGCTCATCTGGCTT TGATGTGTCCTGTGACTTTGAAGATGCTACGGTCTGCGGATACACACAGA GTGGAACAGACGACTTTGACTGGACGTGGCAGAGTGGGGACACTCCCACC TCCAACAGTGGACCAACAAACGACCATACTTATGGCACTGGAGCTGGACA CTACTTTTACGTTGAGGCCTCCAGCCCCAGACAGCCAGGGGAAACAGCAG TTCTGTACAGTAGCCTCATCCCCGCCACTCCAGGCCGCTGCCTAGAGTTC TACTACCACATGTACGGGAACAGCATCGGCACCCTGAATGTGTACTCCAA CGGCATCAATGGTCCCAGTGTGTGGAGCATGTCGGGTGACCAGGGTAACG TGTGGCACCAAGCTCAGGTCAGCGTCAGCAACACTGCAGCCTTCCAACTT TCGTTTGAAGGAGTCATTGGCACCAGCTTCCGAGGTGACATTGCTATTGA TGACGTGACCTTGAAGGGATATGATTGTTCCACGGCCGGCAACTGTAACT TTGAGAATGGATTGTGCACATGGACCAACAATGGGCCTGACGATGACTTT GACTGGCTGATAGGACGGGGTGGAACCAACAGTCAGTTCACTGGACCATC TGTGGATCATACGCTCGGCACAGATCAAGGACTTTATGTATTCGTGGAGA CGTCCAACCCAAGAGTACCGGGTGACGTGACCCAGTCTGGCAGCGTAAGT GACCTCTGGATCCTGGGGACAGTGAACGTCCCCACCGCCTCCACCTTCCA GCCTGTGTTTGAGGCCGTCAGGGGATTCAGTTTCCGTGGAGACATCGGTC TGGACGACATACAGGTGTTGGATGGGCCCTGCTCATCTGGCTTTGATGTG TCCTGTGACTTTGAAGATGCTACGGTCTGCGGATACACACAGAGTGGAAC AGACGACTTTGACTGGACGTGGCAGAGTGGGGACACTCCCACCTCCAACA GTGGACCAACAAACGACCATACTTATGGCACTGGAGCTGGACACTACTTT TACGTTGAGGCCTCCAGCCCCAGACAGCCAGGGGAAACAGCAGTTCTGTA CAGTAGCCTCATCCCCGCCACTCCAGGCCGCTGCCTAGAGTTCTACTACC ACATGTACGGGAACAGCATCGGCACCCTGAATGTGTACTCCAACGGCATC AATGGTCCCAGTGTGTGGAGCATGTCGGGTGACCAGGGTAACGTGTGGCA CCAAGCTCAGGTCAGCGTCAGCAACACTGCAGCCTTCCAACTTTCGTTTG AAGGAGTCATTGGCACCAGCTTCCGAGGTGACATTGCTATTGATGACGTG ACCTTGAAGGGATATGATTGTTCCACGGCCGGCAACTGTAACTTTGAGAA TGGATTGTGCACATGGACCAACAATGGGCCTGACGATGACTTTGACTGGC TGATAGGACGGGGTGGAACCAACAGTCAGTTCACTGGACCATCTGTGGAT CATACGCTCGGCACAGATCAAGGACTTTATGTATTCGTGGAGACGTCCAA CCCAAGAGTACCGGGTGACGTGACCCAGTCTGGCAGCGTAAGTGACCTCT GGATCCTGGGGACAGTGAACGTCCCCACCGCCTCCACCTTCCAGCCTGTG TTTGAGGCCGTCAGGGGATTCAGTTTCCGTGGAGACATCGGTCTGGACGA CATACAGGTGTTGGATGGGCCCTGCTCATCTGGCTTTGATGTGTCCTGTG ACTTTGAAGATGCTACGGTCTGCGGATACACACAGAGTGGAACAGACGAC TTTGACTGGACGTGGCAGAGTGGGGACACTCCCACCTCCAACAGTGGACC AACAAACGACCATACTTATGGCACTGGAGCTGGACACTACTTTTACGTTG AGGCCTCCAGCCCCAGACAGCCAGGGGAAACAGCAGTTCTGTACAGTAGC CTCATCCCCGCCACTCCAGGCCGCTGCCTAGAGTTCTACTACCACATGTA CGGGAACAGCATCGGCACCCTGAATGTGTACTCCAACGGCATCAATGGTC CCAGTGTGTGGAGCATGTCGGGTGACCAGGGTAACGTGTGGCACCAAGCT CAGGTCAGCGTCAGCAACACTGCAGCCTTCCAACTTTCGTTTGAAGGAGT CATTGGCACCAGCTTCCGAGGTGACATTGCTATTGATGACGTGACCTTGA AGGGATATGATTGTTCCACGGCCGGCAACTGTAACTTTGAGAATGGATTG TGCACATGGACCAACAATGGGCCTGACGATGACTTTGACTGGCTGATAGG ACGGGGTGGAACCAACAGTCAGTTCACTGGACCATCTGTGGATCATACGC TCGGCACAGATCAAGGACTTTATGTATTCGTGGAGACGTCCAACCCAAGA GTACCGGGTGACGTGACCCAGTCTGGCAGCGTAAGTGACCTCTGGATCCT GGGGACAGTGAACGTCCCCACCGCCTCCACCTTCCAGCCTGTGTTTGAGG CCGTCAGGGGATTCAGTTTCCGTGGAGACATCGGTCTGGACGACATACAG GTGTTGGATGGGCCCTGCTCATCTGGCTTTGATGTGTCCTGTGACTTTGA AGATGCTACGGTCTGCGGATACACACAGAGTGGAACAGACGACTTTGACT GGACGTGGCAGAGTGGGGACACTCCCACCTCCAACAGTGGACCAACAAAC GACCATACTTATGGCACTGGAGCTGGACACTACTTTTACGTTGAGGCCTC CAGCCCCAGACAGCCAGGGGAAACAGCAGTTCTGTACAGTAGCCTCATCC CCGCCACTCCAGGCCGCTGCCTAGAGTTCTACTACCACATGTACGGGAAC AGCATCGGCACCCTGAATGTGTACTCCAACGGCATCAATGGTCCCAGTGT GTGGAGCATGTCGGGTGACCAGGGTAACGTGTGGCACCAAGCTCAGGTCA GCGTCAGCAACACTGCAGCCTTCCAACTTTCGTTTGAAGGAGTCATTGGC ACCAGCTTCCGAGGTGACATTGCTATTGATGACGTGACCTTGAAGGGATA TGATTGTTCCACGGCCGGCAACTGTAACTTTGAGAATGGATTGTGCACAT GGACCAACAATGGGCCTGACGATGACTTTGACTGGCTGATAGGACGGGGT GGAACCAACAGTCAGTTCACTGGACCATCTGTGGATCATACGCTCGGCAC AGATCAAGGACTTTATGTATTCGTGGAGACGTCCAACCCAAGAGTACCGG GTGACGTGACCCAGTCTGGCAGCGTAAGTGACCTCTGGATCCTGGGGACA GTGAACGTCCCCACCGCCTCCACCTTCCAGCCTGTGTTTGAGGCCGTCAG GGGATTCAGTTTCCGTGGAGACATCGGTCTGGACGACATACAGGTGTTGG ATGGGCCCTGCTCATCTGGCTTTGATGTGTCCTGTGACTTTGAAGATGCT ACGGTCTGCGGATACACACAGAGTGGAACAGACGACTTTGACTGGACGTG GCAGAGTGGGGACACTCCCACCTCCAACAGTGGACCAACAAACGACCATA CTTATGGCACTGGAGCTGGACACTACTTTTACGTTGAGGCCTCCAGCCCC AGACAGCCAGGGGAAACAGCAGTTCTGTACAGTAGCCTCATCCCCGCCAC TCCAGGCCGCTGCCTAGAGTTCTACTACCACATGTACGGGAACAGCATCG GCACCCTGAATGTGTACTCCAACGGCATCAATGGTCCCAGTGTGTGGAGC ATGTCGGGTGACCAGGGTAACGTGTGGCACCAAGCTCAGGTCAGCGTCAG CAACACTGCAGCCTTCCAACTTTCGTTTGAAGGAGTCATTGGCACCAGCT TCCGAGGTGACATTGCTATTGATGACGTGACCTTGAAGGGATATGATTGT TCCACGGCCGGCAACTGTAACTTTGAGAATGGATTGTGCACATGGACCAA CAATGGGCCTGACGATGACTTTGACTGGCTGATAGGACGGGGTGGAACCA ACAGTCAGTTCACTGGACCATCTGTGGATCATACGCTCGGCACAGATCAA GGACTTTATGTATTCGTGGAGACGTCCAACCCAAGAGTACCGGGTGACGT G
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000000 | genome | Sc0000000:3125156..3129796 - |
Properties
Property Name | Value |
Transcript id | BL96597_cuf19 |
Biotype | protein_coding |
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