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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96595_cuf13 >transcript:BL96595_cuf13-protein ID=transcript:BL96595_cuf13-protein|Name=transcript:BL96595_cuf13|organism=Branchiostoma lanceolatum|type=polypeptide|length=277bp
DIAVLTSPVFDQSSPTCQLSFWYHMYGNGIGTMQVILRQGNQDTQLFRRI
GGQGNRWNSMIIGLGQLRAPFQILFEATRSFSVRGDIALDDINFINCELP
PTEDSCTADQLRCTRGSCVGLDRVCDYTDDCGDGTDEAPNQCANIPDRCD
FQNGICSWTQFGGDNFSWSRRAGCTPTGNTGPCRDHTTNTDAGYYLYIEA
SNRNNGAFARVASRIFAGTTGSTNPCTLRFYYHMYGNNIGSLAVKMRTTY
GGPLTQIWARTAQVGNYWERAEITIQS Run BLAST on NCBI mRNA from alignment at Sc0000000:3075463..3078729- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96595_cuf13 ID=transcript:BL96595_cuf13|Name=transcript:BL96595_cuf13|organism=Branchiostoma lanceolatum|type=mRNA|length=3267bp|location=Sequence derived from alignment at Sc0000000:3075463..3078729- (Branchiostoma lanceolatum)
GACATCGCGGTGCTAACAAGTCCCGTGTTTGATCAGTCCAGCCCGACCTG
TCAACTGTCCTTCTGGTATCATATGTATGGAAATGGTGAGTATATAAATC
TACTGTTTCTGTACTTTTTTTTATTCTCTGTCACACATTCAATAAGCTTT
GGCCACATTTTTTGATCGCCTGAAGGTTCCAGAAGGTATAAATTGAGTGT
GTTTTCTCTTATATTGGATGGGGCTAAGGGACTTGTGAAAATTGGCCAAT
CTGTAAAAATCATGTCATGATTAAGGCGCATTACTGCCAAAAATGTGAGG
TAGAGCTTGCAGGCTCGTCAGTCGATTGATTATCCTGGTGCATTATGTAT
TATGTGCTGTGCCTTGTGTGTTTTTTCTATATGTAGGCTAGGTATGATTC
ACTTAACCAACTCGATTTGGGGTTAAATAGACGTTTTGGGGGTCCTTTCC
TCATTTTACCTGGACCCAAGGAGTGAAAAGGGGTTAATAAAAGTGACTTT
TCACTCTTTTTTATCCTCCATTTCTGGTGAGGACCCCAAAAGTTCCATTT
AACACCAAATCCAGTTGGTACTGTAATTGAAACAAGCATCATGATGTCAT
CTTCTTCCTCCTGTAGGCATTGGTACCATGCAGGTGATCTTGAGACAAGG
AAACCAGGACACGCAGCTGTTCCGTAGAATAGGGGGGCAAGGCAACAGAT
GGAACAGCATGATCATAGGTCTGGGACAACTACGAGCTCCATTCCAGGTA
ATTGGTATAAGATTCTGAAATATAGTCTAACTTATATCTACAAGATTCCT
TAAGTTACACTATAATGATAGATTGATAGTTCAAAATCCTTTCCCATCTT
TCGATGTATAGGGACAGTGCCCATCTTCATTTCTATAGCCCCTGGTCCAC
ACAGGTCACAGTAGGGGGCTATTTCACTGGTAGTGGTGTTGTTTGACTCC
CATATTCTTTCTGATAAGTGCTGAGTGCTAAGCAGAGGAAGCAGTAATCA
CCATTTTTCAAGACATTGGTTGGTACATGTATGACCCAACCTTCTGAGTG
CATGACAAAACACTCAATTTTAAAATGTCCTTTTTCCTTAAATGGTAGAT
TTAGATTGTTGCACATGAAATGAAAATTGAAGTAACTGAGTTTGTTCTTT
TTAAATTTGTTTCAGATCTTGTTTGAGGCTACTCGTAGCTTCAGTGTTCG
CGGTGACATTGCTTTGGACGACATCAACTTTATCAACTGTGAGCTACCAC
GTAAGTCACAGGGAACTTGTTTTCGTATTTGCTGGTGGCATTGGTAAAAT
AGGTAGGACAAAATGTCAATTCTAAAATCAAGGGGAAAATGTGCATGGTA
TACTTTTGTTAATAGATGTAAGCATTATATGGCCAGGTCCTTTTGCTTTC
TTCTTTTTTTCAACTGGCACTTAAGCCTTCTCCAGCTAAGCTTACACACT
CATTCCGTGCACTTGACCTCACATGGCCTATGTGTTGTTGACTTTACCTG
TCCTGCGTGTTGTTGCCATAGCAACCGAGGATTCCTGCACAGCTGACCAG
CTGAGATGCACCCGGGGCTCCTGTGTGGGGCTGGACCGAGTCTGTGACTA
CACCGACGACTGTGGCGACGGGACGGATGAGGCACCCAACCAGTGTGGTA
TGCGATTGATTTATTGATCTGTTACCGCTATGAAAAATAGAGGTATTGTT
TTGAGTGTGCGTGCTTGTGTGCGTGTGTGTGAGTGTGTGCGTGCATGTGT
GTGTGTTGTGTGTTTGATTTGTGGTATGGGATTAATTGATTGATTTCTTG
ATAAAGACTATCTTCACTTTACTTGGGTATCAATTCATAGTTCGTGGTTA
AAACCTGATCAACAAATCTTCTCAGTGTCAATGACGAAAAGTAGTGTAGG
TAGCAACCCGACACATCACGATCATATCCAGTTGCTTGTTAAGAATACCT
GCTATTTGGCGTATCTTATTACATGGATGTCCAACATTCATTGACATAAA
GACTGCCTGTTTCCTTTGTTCCAGCCAACATCCCAGACAGGTGTGACTTC
CAGAACGGCATCTGCAGCTGGACCCAGTTTGGCGGGGACAACTTCAGCTG
GTCCCGACGAGCCGGCTGCACGCCGACAGGCAACACTGGGCCCTGCAGGG
ACCACACCACTAACACCGACGCTGGTGATTTTTCGTACTTATGTACTTTG
AAAAAAATATTTTTAATGCGTTTGCTCAAAGTGCAAGGCTACATGGACCA
CTTTTGGGCATTAAACTAACACTCACTGAAGCAGCATCTCTTCTCCCTAA
GTCAGAAACATCAAGCTCTTGGGCATGAGAGACCACACTACTAACACTGA
TGCTGGTAATTTTTTGTATATTTGTGCTTTTTTTTGTGCAGGTTTGCTCA
GTGGAACAGTGACAGAAGATGTAAGAAGCTACAGATTAAGTTGCAATGTA
GTTTGCATCAGATTGTTTAGAAATCAAAATGTATTTTTAATGTTTGACCT
TCCAAATTGAATAGAAACTAACCTTTGACCCTATTTTACCCACAGGTTAC
TATCTGTACATTGAGGCCAGCAACAGGAATAATGGCGCCTTTGCACGAGT
TGCAAGCCGTATATTTGCTGGCACAACAGGCAGTACTAATCCTTGCACTG
TGAGTTTGGTTTTTTTTATCATGACTCATTCATTATTTTCCTCAAGTTTT
ATTCTAAAGAAAGTAGTTTGAAGAGGAACAGTCATGCAAAGGACTCAGGA
TTTCAATACCAAGGACAGGCCATGATCAGGGTTTCAGCACTAAACTAAGA
AAAGTGTGCGTGGCCCAAAGTATGTAAGCCGTAGTGAAGCCGCATTGCAC
TAATAGCTAACAAAAAGCATTATGCTTTGTCCTCAGTCTGAAGTTGGACC
GCTTCACCTTTACCCTACTAAACTGGGTGGTTGAGAGAAAGGGGAGTTTA
GCAGCAAAATTTATCTGCATAATTTCAAATTTACGACTTGAAGAATATGC
TAATCATTGTATGCAGAGTAAAGCTTGCAAAATTGACAGAACCAAAAGAT
AGAGAAATATGATTATGATGTTGCCACTCAGAAAATGCAGTGTATCTCAC
TGACTTATTTTACAGCTGAGGTTCTACTACCACATGTATGGAAATAACAT
TGGCAGCCTGGCTGTGAAAATGCGTACTACTTATGGTGGACCGCTGACTC
AGATATGGGCCAGAACCGCCCAGGTTGGAAACTACTGGGAGAGGGCAGAG
ATAACGATTCAGAGCAG Coding sequence (CDS) from alignment at Sc0000000:3075463..3078729- >transcript:BL96595_cuf13 ID=transcript:BL96595_cuf13|Name=transcript:BL96595_cuf13|organism=Branchiostoma lanceolatum|type=CDS|length=5817bp|location=Sequence derived from alignment at Sc0000000:3075463..3078729- (Branchiostoma lanceolatum)
GACATCGCGGTGCTAACAAGTCCCGTGTTTGATCAGTCCAGCCCGACCTG
TCAACTGTCCTTCTGGTATCATATGTATGGAAATGGCATTGGTACCATGC
AGGTGATCTTGAGACAAGGAAACCAGGACACGCAGCTGTTCCGTAGAATA
GGGGGGCAAGGCAACAGATGGAACAGCATGATCATAGGTCTGGGACAACT
ACGAGCTCCATTCCAGATCTTGTTTGAGGCTACTCGTAGCTTCAGTGTTC
GCGGTGACATTGCTTTGGACGACATCAACTTTATCAACTGTGAGCTACCA
CCAACCGAGGATTCCTGCACAGCTGACCAGCTGAGATGCACCCGGGGCTC
CTGTGTGGGGCTGGACCGAGTCTGTGACTACACCGACGACTGTGGCGACG
GGACGGATGAGGCACCCAACCAGTGTGCCAACATCCCAGACAGGTGTGAC
TTCCAGAACGGCATCTGCAGCTGGACCCAGTTTGGCGGGGACAACTTCAG
CTGGTCCCGACGAGCCGGCTGCACGCCGACAGGCAACACTGGGCCCTGCA
GGGACCACACCACTAACACCGACGCTGGTTACTATCTGTACATTGAGGCC
AGCAACAGGAATAATGGCGCCTTTGCACGAGTTGCAAGCCGTATATTTGC
TGGCACAACAGGCAGTACTAATCCTTGCACTCTGAGGTTCTACTACCACA
TGTATGGAAATAACATTGGCAGCCTGGCTGTGAAAATGCGTACTACTTAT
GGTGGACCGCTGACTCAGATATGGGCCAGAACCGCCCAGGTTGGAAACTA
CTGGGAGAGGGCAGAGATAACGATTCAGAGCGACATCGCGGTGCTAACAA
GTCCCGTGTTTGATCAGTCCAGCCCGACCTGTCAACTGTCCTTCTGGTAT
CATATGTATGGAAATGGCATTGGTACCATGCAGGTGATCTTGAGACAAGG
AAACCAGGACACGCAGCTGTTCCGTAGAATAGGGGGGCAAGGCAACAGAT
GGAACAGCATGATCATAGGTCTGGGACAACTACGAGCTCCATTCCAGATC
TTGTTTGAGGCTACTCGTAGCTTCAGTGTTCGCGGTGACATTGCTTTGGA
CGACATCAACTTTATCAACTGTGAGCTACCACCAACCGAGGATTCCTGCA
CAGCTGACCAGCTGAGATGCACCCGGGGCTCCTGTGTGGGGCTGGACCGA
GTCTGTGACTACACCGACGACTGTGGCGACGGGACGGATGAGGCACCCAA
CCAGTGTGCCAACATCCCAGACAGGTGTGACTTCCAGAACGGCATCTGCA
GCTGGACCCAGTTTGGCGGGGACAACTTCAGCTGGTCCCGACGAGCCGGC
TGCACGCCGACAGGCAACACTGGGCCCTGCAGGGACCACACCACTAACAC
CGACGCTGGTTACTATCTGTACATTGAGGCCAGCAACAGGAATAATGGCG
CCTTTGCACGAGTTGCAAGCCGTATATTTGCTGGCACAACAGGCAGTACT
AATCCTTGCACTCTGAGGTTCTACTACCACATGTATGGAAATAACATTGG
CAGCCTGGCTGTGAAAATGCGTACTACTTATGGTGGACCGCTGACTCAGA
TATGGGCCAGAACCGCCCAGGTTGGAAACTACTGGGAGAGGGCAGAGATA
ACGATTCAGAGCGACATCGCGGTGCTAACAAGTCCCGTGTTTGATCAGTC
CAGCCCGACCTGTCAACTGTCCTTCTGGTATCATATGTATGGAAATGGCA
TTGGTACCATGCAGGTGATCTTGAGACAAGGAAACCAGGACACGCAGCTG
TTCCGTAGAATAGGGGGGCAAGGCAACAGATGGAACAGCATGATCATAGG
TCTGGGACAACTACGAGCTCCATTCCAGATCTTGTTTGAGGCTACTCGTA
GCTTCAGTGTTCGCGGTGACATTGCTTTGGACGACATCAACTTTATCAAC
TGTGAGCTACCACCAACCGAGGATTCCTGCACAGCTGACCAGCTGAGATG
CACCCGGGGCTCCTGTGTGGGGCTGGACCGAGTCTGTGACTACACCGACG
ACTGTGGCGACGGGACGGATGAGGCACCCAACCAGTGTGCCAACATCCCA
GACAGGTGTGACTTCCAGAACGGCATCTGCAGCTGGACCCAGTTTGGCGG
GGACAACTTCAGCTGGTCCCGACGAGCCGGCTGCACGCCGACAGGCAACA
CTGGGCCCTGCAGGGACCACACCACTAACACCGACGCTGGTTACTATCTG
TACATTGAGGCCAGCAACAGGAATAATGGCGCCTTTGCACGAGTTGCAAG
CCGTATATTTGCTGGCACAACAGGCAGTACTAATCCTTGCACTCTGAGGT
TCTACTACCACATGTATGGAAATAACATTGGCAGCCTGGCTGTGAAAATG
CGTACTACTTATGGTGGACCGCTGACTCAGATATGGGCCAGAACCGCCCA
GGTTGGAAACTACTGGGAGAGGGCAGAGATAACGATTCAGAGCGACATCG
CGGTGCTAACAAGTCCCGTGTTTGATCAGTCCAGCCCGACCTGTCAACTG
TCCTTCTGGTATCATATGTATGGAAATGGCATTGGTACCATGCAGGTGAT
CTTGAGACAAGGAAACCAGGACACGCAGCTGTTCCGTAGAATAGGGGGGC
AAGGCAACAGATGGAACAGCATGATCATAGGTCTGGGACAACTACGAGCT
CCATTCCAGATCTTGTTTGAGGCTACTCGTAGCTTCAGTGTTCGCGGTGA
CATTGCTTTGGACGACATCAACTTTATCAACTGTGAGCTACCACCAACCG
AGGATTCCTGCACAGCTGACCAGCTGAGATGCACCCGGGGCTCCTGTGTG
GGGCTGGACCGAGTCTGTGACTACACCGACGACTGTGGCGACGGGACGGA
TGAGGCACCCAACCAGTGTGCCAACATCCCAGACAGGTGTGACTTCCAGA
ACGGCATCTGCAGCTGGACCCAGTTTGGCGGGGACAACTTCAGCTGGTCC
CGACGAGCCGGCTGCACGCCGACAGGCAACACTGGGCCCTGCAGGGACCA
CACCACTAACACCGACGCTGGTTACTATCTGTACATTGAGGCCAGCAACA
GGAATAATGGCGCCTTTGCACGAGTTGCAAGCCGTATATTTGCTGGCACA
ACAGGCAGTACTAATCCTTGCACTCTGAGGTTCTACTACCACATGTATGG
AAATAACATTGGCAGCCTGGCTGTGAAAATGCGTACTACTTATGGTGGAC
CGCTGACTCAGATATGGGCCAGAACCGCCCAGGTTGGAAACTACTGGGAG
AGGGCAGAGATAACGATTCAGAGCGACATCGCGGTGCTAACAAGTCCCGT
GTTTGATCAGTCCAGCCCGACCTGTCAACTGTCCTTCTGGTATCATATGT
ATGGAAATGGCATTGGTACCATGCAGGTGATCTTGAGACAAGGAAACCAG
GACACGCAGCTGTTCCGTAGAATAGGGGGGCAAGGCAACAGATGGAACAG
CATGATCATAGGTCTGGGACAACTACGAGCTCCATTCCAGATCTTGTTTG
AGGCTACTCGTAGCTTCAGTGTTCGCGGTGACATTGCTTTGGACGACATC
AACTTTATCAACTGTGAGCTACCACCAACCGAGGATTCCTGCACAGCTGA
CCAGCTGAGATGCACCCGGGGCTCCTGTGTGGGGCTGGACCGAGTCTGTG
ACTACACCGACGACTGTGGCGACGGGACGGATGAGGCACCCAACCAGTGT
GCCAACATCCCAGACAGGTGTGACTTCCAGAACGGCATCTGCAGCTGGAC
CCAGTTTGGCGGGGACAACTTCAGCTGGTCCCGACGAGCCGGCTGCACGC
CGACAGGCAACACTGGGCCCTGCAGGGACCACACCACTAACACCGACGCT
GGTTACTATCTGTACATTGAGGCCAGCAACAGGAATAATGGCGCCTTTGC
ACGAGTTGCAAGCCGTATATTTGCTGGCACAACAGGCAGTACTAATCCTT
GCACTCTGAGGTTCTACTACCACATGTATGGAAATAACATTGGCAGCCTG
GCTGTGAAAATGCGTACTACTTATGGTGGACCGCTGACTCAGATATGGGC
CAGAACCGCCCAGGTTGGAAACTACTGGGAGAGGGCAGAGATAACGATTC
AGAGCGACATCGCGGTGCTAACAAGTCCCGTGTTTGATCAGTCCAGCCCG
ACCTGTCAACTGTCCTTCTGGTATCATATGTATGGAAATGGCATTGGTAC
CATGCAGGTGATCTTGAGACAAGGAAACCAGGACACGCAGCTGTTCCGTA
GAATAGGGGGGCAAGGCAACAGATGGAACAGCATGATCATAGGTCTGGGA
CAACTACGAGCTCCATTCCAGATCTTGTTTGAGGCTACTCGTAGCTTCAG
TGTTCGCGGTGACATTGCTTTGGACGACATCAACTTTATCAACTGTGAGC
TACCACCAACCGAGGATTCCTGCACAGCTGACCAGCTGAGATGCACCCGG
GGCTCCTGTGTGGGGCTGGACCGAGTCTGTGACTACACCGACGACTGTGG
CGACGGGACGGATGAGGCACCCAACCAGTGTGCCAACATCCCAGACAGGT
GTGACTTCCAGAACGGCATCTGCAGCTGGACCCAGTTTGGCGGGGACAAC
TTCAGCTGGTCCCGACGAGCCGGCTGCACGCCGACAGGCAACACTGGGCC
CTGCAGGGACCACACCACTAACACCGACGCTGGTTACTATCTGTACATTG
AGGCCAGCAACAGGAATAATGGCGCCTTTGCACGAGTTGCAAGCCGTATA
TTTGCTGGCACAACAGGCAGTACTAATCCTTGCACTCTGAGGTTCTACTA
CCACATGTATGGAAATAACATTGGCAGCCTGGCTGTGAAAATGCGTACTA
CTTATGGTGGACCGCTGACTCAGATATGGGCCAGAACCGCCCAGGTTGGA
AACTACTGGGAGAGGGCAGAGATAACGATTCAGAGCGACATCGCGGTGCT
AACAAGTCCCGTGTTTGATCAGTCCAGCCCGACCTGTCAACTGTCCTTCT
GGTATCATATGTATGGAAATGGCATTGGTACCATGCAGGTGATCTTGAGA
CAAGGAAACCAGGACACGCAGCTGTTCCGTAGAATAGGGGGGCAAGGCAA
CAGATGGAACAGCATGATCATAGGTCTGGGACAACTACGAGCTCCATTCC
AGATCTTGTTTGAGGCTACTCGTAGCTTCAGTGTTCGCGGTGACATTGCT
TTGGACGACATCAACTTTATCAACTGTGAGCTACCACCAACCGAGGATTC
CTGCACAGCTGACCAGCTGAGATGCACCCGGGGCTCCTGTGTGGGGCTGG
ACCGAGTCTGTGACTACACCGACGACTGTGGCGACGGGACGGATGAGGCA
CCCAACCAGTGTGCCAACATCCCAGACAGGTGTGACTTCCAGAACGGCAT
CTGCAGCTGGACCCAGTTTGGCGGGGACAACTTCAGCTGGTCCCGACGAG
CCGGCTGCACGCCGACAGGCAACACTGGGCCCTGCAGGGACCACACCACT
AACACCGACGCTGGTTACTATCTGTACATTGAGGCCAGCAACAGGAATAA
TGGCGCCTTTGCACGAGTTGCAAGCCGTATATTTGCTGGCACAACAGGCA
GTACTAATCCTTGCACTCTGAGGTTCTACTACCACATGTATGGAAATAAC
ATTGGCAGCCTGGCTGTGAAAATGCGTACTACTTATGGTGGACCGCTGAC
TCAGATATGGGCCAGAACCGCCCAGGTTGGAAACTACTGGGAGAGGGCAG
AGATAACGATTCAGAGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:3075463..3078729 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96595_cuf13 |
| Biotype | protein_coding |
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