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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96582_cuf5 >transcript:BL96582_cuf5-protein ID=transcript:BL96582_cuf5-protein|Name=transcript:BL96582_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=476bp
LRRATALVELYRELFQESLVVSQEVFLINCMEAGSSGIRRLREMLAAFRD
DMLKQRPQVPKVCIQLSETIEDCREERKAFPVMGWQDYLTAVRQETYGTL
EERIVQLASSYLHDEGEIIYLRHETDSMVVLDPQWLFTSVFGSLLAPDNF
PIDKVARTAEDYVTLEEITRVFSAVADIPLLIKFLQDFQLCHTYDGRTFI
LPSLLQQEMEEAAWSPVSSKAVYFGTQIRGRTEIDSFSCDLFPRLQTLLM
QVHPDKLSRPLLWKNSAKCTDGKAEALLQITQDKRQLNIFVRSTKGNRED
CNSIMDLLKDMTYRLLHETSPGARSRDMVLSALDLREHRPQPHAYSREVV
EEAADAGRDVVHPRRNIPEDVKDILLNLGNLKGMLGRVAQKRPELVETLR
HISPILDHLRADDVINMEENDRIRTARTPQDAARELLDILEAKGESACVK
FHSVLETCDEYAASLLKERPVSEKTS Run BLAST on NCBI mRNA from alignment at Sc0000000:817645..821171- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96582_cuf5 ID=transcript:BL96582_cuf5|Name=transcript:BL96582_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=3527bp|location=Sequence derived from alignment at Sc0000000:817645..821171- (Branchiostoma lanceolatum)
CTTCGCCGGGCCACAGCTCTGGTGGAACTCTACAGAGAGCTGTTCCAGGA
GTCACTGGTGGTGTCACAGGAGGTGTTCCTGATCAATTGCATGGAAGCGG
GGTCTTCTGGGATACGCCGGCTGCGAGAAATGCTGGCAGCATTCAGGGAC
GATATGCTGAAGGTACAGATTATAGGGTTGCTTTGATCTTCTGTTAGTAA
TCAGTAACATAATTGCAGCAACTATTGTTGTATCACCTTCCTCTTACTTA
AAACATTTTTTAGGCTTTGTGGGAACTGCACAACTAAGGATGATATTCAA
TAGAACCTATTTTGTTGCACACTAATACTTGGTCTGCACTTGGTCTGCAC
ACAGCAAAGACCACAGGTCCCAAAGGTCTGCATCCAGTTGTCAGAGACCA
TTGAAGACTGTAGAGAGGAGAGGAAGGCGTTCCCAGTTATGGGATGGCAG
GACTACCTGACAGCTGTCAGGCAAGAAACGTATGGCACCCTCGAGGAACG
CATAGTACAGCTGGCGTCATCGTACCTACATGATGAGGGGGAGGTAATTG
TGTCTTTTTGAAACCGGAGCATGCAATGATTATTTTTTTTGCTTATAAGT
GTTCTTTTCAGTTTAGAGAATAACATCTATCGGTTACTGTAGAATTTTGA
TCTTATCGATATCAATTACGGTCAACATAATAACATCTGTTTCAACCCAG
ACATAACATCAGAAAAGTAACGTAGCGAATAAATTTTCCCCGTTGTCTGC
TCCGTAAATACATTTAGATCATCTACCTTCGCCATGAAACCGACTCGATG
GTAGTTCTGGACCCCCAGTGGTTGTTCACATCGGTTTTCGGATCCCTGCT
CGCCCCGGACAACTTCCCTATCGATAAGGTGGCGAGGACTGCGGAGGACT
ACGTCACCCTTGAGGAGATCACCCGTGTCTTCAGTGCAGTTGCCGACATC
CCTCTTCTGATCAAATTCCTCCAGGACTTCCAGCTCTGCCACACGTACGA
CGGTCGCACCTTCATCCTCCCCAGCCTGCTGCAGCAGGAGATGGAAGAGG
CGGCGTGGTCTCCTGTGTCCAGCAAGGCTGTCTACTTCGGTACGCAGATC
CGAGGCCGCACGGAGATCGACAGCTTCTCGTGCGACCTGTTCCCGCGGCT
GCAGACGCTGCTGATGCAGGTGCACCCTGACAAGCTCAGCCGGCCTCTCC
TGTGGAAGAACAGCGCCAAATGTACCGACGGGAAGGCCGAAGCGCTACTG
CAGATCACACAGGACAAGAGGCAGCTCAACATCTTCGTCAGGAGCACGAA
AGGCAACAGGGAGGACTGCAACTCCATCATGGACCTCCTGAAGGACATGA
CGTACCGCCTGCTGCACGAGACCAGCCCAGGAGCCAGGTCACGGGACATG
GTGCTCAGCGCCTTGGACCTCCGGGAACACAGACCGCAGCCTCACGCCTA
CAGTAGGGAAGTGGTGGAGGAGGCGGCGGATGCGGGCAGGGACGTCGTCC
ACCCTAGAAGAAACATTCCGGAAGACGTCAAGGATATCCTGTTGAACCTC
GGCAACCTGAAAGGTAAGTTCATTTACTAATACATTACACTGGAAAACTA
AAGATACAGAGTCTGAATTTGTAGCAAACGCGAGAAAAACAAATACAACA
TCTTGCGAAGCTTATAATATACCAAAATTTCGGTAATCCTAAACGAAATC
CGGCATCAATATGTGCCTAGAATGCAAACCTACCAATTTTTGTCAAATCA
CTGTCGAGATCGGTTATTTTAACTAGTTAAGCAAGAGTTTGAAGACACAC
TATTCTCATTTCAACATGGTAGTTACAGTTTTCGTTCTCTTTGCGTCACA
TTGGGGATGACAAAACGATTGACTGTATTTTGTTGTCTTACGACAGGCAT
GCTGGGACGGGTAGCCCAGAAGAGGCCGGAGCTGGTGGAGACCCTGCGTC
ACATCAGCCCCATCCTGGACCACCTCCGCGCTGATGACGTCATCAACATG
GAGGAGAACGACCGCATCCGGACCGCCAGGACTCCCCAGGATGCAGCGCG
CGAGCTGCTGGACATTCTGGAGGCCAAAGGTGAAAGTGCATGTGTCAAGT
TTCACTCTGTCCTTGAAACATGTGATGAGTATGCCGCGAGTCTACTAAAG
GAGAGACCGGTGTCTGAGAAGACAAGTTAGATCTTATATTCTGCCGCAGT
ACTTTTTCTGTACGCCTTATGTTTTTAACCTAAGGGGAAATATTGAAAAC
ATGTAGCTATCCTTGTGAGATCATCATGCTATACTCAACGTTGTATTCAG
GATGGTGTTACATGACGTTATGAGGTTGTGAGCAGCTGATGGCTTGATTA
TAGTATATTTAATCATCCGATTGGGCTAGCAATGATACTGTTCCAATGTT
TGAACCATGAAGGCGCGAAGACAAATATGCTGCTAGCCTCTAAGAGGATA
AGCAGATGTCTAGGGAGATAGCAGGTTAGACCTGGGATTCTATAACACTA
CTTTCATTGAAAACGTTTAACGTTCTTTGGGAATCTTAATAGAATATGAA
ATATTATATTCATGATGCCAATGTTTTACATGATAAATCTAGACCCTAGA
CTCTAGGCAAATAGACTCTGGCTAGAATAATTGAATATGTATCACTATGT
AACTTTGTTAAAGTTTCATACTGTTATCTGGTGAATTATGCATACAGCAG
ACATTTCCAATTCCATTAGACACTGCACGTAGATCAGAGTACACGCGCAC
GCACTCTGGCCAATCGTTAAGAGACAATTTGCATAGAAGTGGCCGTTTTA
GTTTGTTTGTCAGTGATAGCTTAGTAGTTTGCAATACATTAACAAAATGC
ATGCGATCACATTTACCTTTTATTTGTGCACTTAGATAAAGCCATATTAA
ATCTTGTATTCTAATTTTCCATATAAAATGTATATTATCACAAGCCTCTC
GGTCTAAACTACTTGACAGGTGGCGATCAACAATCAGTGGTGTGCAATAC
AACTGTATAATTTTGATAAGAATATGACTTGTACATACATGTACAGTTTA
AATTACACTAGATGATAGATACTTAGAGAGCTAGATCAGACTATGCTATG
ACACGATACAGTCTCGGGCCAATGGCAAATGCCATAAATATGGGATGTGA
GGTTTATTTTGTTTGGCATTAACAACTTTGAAATGACTTCCGCAACAAAG
GACACTACGAACAAGCGGCCACTGTTTTTTCATCCATTATTGATTGCGTA
TTTGTGTTCCTGAGGACCGATTGTAATTTCGAACAACCACTATAAAACAT
GATACATCGTTTTCCTTTCCGTGTGCGTCACTTTGTATGTATGATTGTGA
TTTTATTAGAATTATGAAATGTTCAAAAACTGTCAATGAAAATGATTTTT
TATTACCATTTGCACATTTCAAGAGTTGGAAGTTGAGCTTCAATTATCTT
TAGTTGGCATTCTCGTCTGAAGTTGATAGGAAAGTTACCCCTTTTTTCAT
TAACAATTACAAACATGTCATCTTCCC Coding sequence (CDS) from alignment at Sc0000000:817645..821171- >transcript:BL96582_cuf5 ID=transcript:BL96582_cuf5|Name=transcript:BL96582_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=5724bp|location=Sequence derived from alignment at Sc0000000:817645..821171- (Branchiostoma lanceolatum)
CTTCGCCGGGCCACAGCTCTGGTGGAACTCTACAGAGAGCTGTTCCAGGA
GTCACTGGTGGTGTCACAGGAGGTGTTCCTGATCAATTGCATGGAAGCGG
GGTCTTCTGGGATACGCCGGCTGCGAGAAATGCTGGCAGCATTCAGGGAC
GATATGCTGAAGCAAAGACCACAGGTCCCAAAGGTCTGCATCCAGTTGTC
AGAGACCATTGAAGACTGTAGAGAGGAGAGGAAGGCGTTCCCAGTTATGG
GATGGCAGGACTACCTGACAGCTGTCAGGCAAGAAACGTATGGCACCCTC
GAGGAACGCATAGTACAGCTGGCGTCATCGTACCTACATGATGAGGGGGA
GATCATCTACCTTCGCCATGAAACCGACTCGATGGTAGTTCTGGACCCCC
AGTGGTTGTTCACATCGGTTTTCGGATCCCTGCTCGCCCCGGACAACTTC
CCTATCGATAAGGTGGCGAGGACTGCGGAGGACTACGTCACCCTTGAGGA
GATCACCCGTGTCTTCAGTGCAGTTGCCGACATCCCTCTTCTGATCAAAT
TCCTCCAGGACTTCCAGCTCTGCCACACGTACGACGGTCGCACCTTCATC
CTCCCCAGCCTGCTGCAGCAGGAGATGGAAGAGGCGGCGTGGTCTCCTGT
GTCCAGCAAGGCTGTCTACTTCGGTACGCAGATCCGAGGCCGCACGGAGA
TCGACAGCTTCTCGTGCGACCTGTTCCCGCGGCTGCAGACGCTGCTGATG
CAGGTGCACCCTGACAAGCTCAGCCGGCCTCTCCTGTGGAAGAACAGCGC
CAAATGTACCGACGGGAAGGCCGAAGCGCTACTGCAGATCACACAGGACA
AGAGGCAGCTCAACATCTTCGTCAGGAGCACGAAAGGCAACAGGGAGGAC
TGCAACTCCATCATGGACCTCCTGAAGGACATGACGTACCGCCTGCTGCA
CGAGACCAGCCCAGGAGCCAGGTCACGGGACATGGTGCTCAGCGCCTTGG
ACCTCCGGGAACACAGACCGCAGCCTCACGCCTACAGTAGGGAAGTGGTG
GAGGAGGCGGCGGATGCGGGCAGGGACGTCGTCCACCCTAGAAGAAACAT
TCCGGAAGACGTCAAGGATATCCTGTTGAACCTCGGCAACCTGAAAGGCA
TGCTGGGACGGGTAGCCCAGAAGAGGCCGGAGCTGGTGGAGACCCTGCGT
CACATCAGCCCCATCCTGGACCACCTCCGCGCTGATGACGTCATCAACAT
GGAGGAGAACGACCGCATCCGGACCGCCAGGACTCCCCAGGATGCAGCGC
GCGAGCTGCTGGACATTCTGGAGGCCAAAGGTGAAAGTGCATGTGTCAAG
TTTCACTCTGTCCTTGAAACATGTGATGAGTATGCCGCGAGTCTACTAAA
GGAGAGACCGGTGTCTGAGAAGACAAGTTAGCTTCGCCGGGCCACAGCTC
TGGTGGAACTCTACAGAGAGCTGTTCCAGGAGTCACTGGTGGTGTCACAG
GAGGTGTTCCTGATCAATTGCATGGAAGCGGGGTCTTCTGGGATACGCCG
GCTGCGAGAAATGCTGGCAGCATTCAGGGACGATATGCTGAAGCAAAGAC
CACAGGTCCCAAAGGTCTGCATCCAGTTGTCAGAGACCATTGAAGACTGT
AGAGAGGAGAGGAAGGCGTTCCCAGTTATGGGATGGCAGGACTACCTGAC
AGCTGTCAGGCAAGAAACGTATGGCACCCTCGAGGAACGCATAGTACAGC
TGGCGTCATCGTACCTACATGATGAGGGGGAGATCATCTACCTTCGCCAT
GAAACCGACTCGATGGTAGTTCTGGACCCCCAGTGGTTGTTCACATCGGT
TTTCGGATCCCTGCTCGCCCCGGACAACTTCCCTATCGATAAGGTGGCGA
GGACTGCGGAGGACTACGTCACCCTTGAGGAGATCACCCGTGTCTTCAGT
GCAGTTGCCGACATCCCTCTTCTGATCAAATTCCTCCAGGACTTCCAGCT
CTGCCACACGTACGACGGTCGCACCTTCATCCTCCCCAGCCTGCTGCAGC
AGGAGATGGAAGAGGCGGCGTGGTCTCCTGTGTCCAGCAAGGCTGTCTAC
TTCGGTACGCAGATCCGAGGCCGCACGGAGATCGACAGCTTCTCGTGCGA
CCTGTTCCCGCGGCTGCAGACGCTGCTGATGCAGGTGCACCCTGACAAGC
TCAGCCGGCCTCTCCTGTGGAAGAACAGCGCCAAATGTACCGACGGGAAG
GCCGAAGCGCTACTGCAGATCACACAGGACAAGAGGCAGCTCAACATCTT
CGTCAGGAGCACGAAAGGCAACAGGGAGGACTGCAACTCCATCATGGACC
TCCTGAAGGACATGACGTACCGCCTGCTGCACGAGACCAGCCCAGGAGCC
AGGTCACGGGACATGGTGCTCAGCGCCTTGGACCTCCGGGAACACAGACC
GCAGCCTCACGCCTACAGTAGGGAAGTGGTGGAGGAGGCGGCGGATGCGG
GCAGGGACGTCGTCCACCCTAGAAGAAACATTCCGGAAGACGTCAAGGAT
ATCCTGTTGAACCTCGGCAACCTGAAAGGCATGCTGGGACGGGTAGCCCA
GAAGAGGCCGGAGCTGGTGGAGACCCTGCGTCACATCAGCCCCATCCTGG
ACCACCTCCGCGCTGATGACGTCATCAACATGGAGGAGAACGACCGCATC
CGGACCGCCAGGACTCCCCAGGATGCAGCGCGCGAGCTGCTGGACATTCT
GGAGGCCAAAGGTGAAAGTGCATGTGTCAAGTTTCACTCTGTCCTTGAAA
CATGTGATGAGTATGCCGCGAGTCTACTAAAGGAGAGACCGGTGTCTGAG
AAGACAAGTTAGCTTCGCCGGGCCACAGCTCTGGTGGAACTCTACAGAGA
GCTGTTCCAGGAGTCACTGGTGGTGTCACAGGAGGTGTTCCTGATCAATT
GCATGGAAGCGGGGTCTTCTGGGATACGCCGGCTGCGAGAAATGCTGGCA
GCATTCAGGGACGATATGCTGAAGCAAAGACCACAGGTCCCAAAGGTCTG
CATCCAGTTGTCAGAGACCATTGAAGACTGTAGAGAGGAGAGGAAGGCGT
TCCCAGTTATGGGATGGCAGGACTACCTGACAGCTGTCAGGCAAGAAACG
TATGGCACCCTCGAGGAACGCATAGTACAGCTGGCGTCATCGTACCTACA
TGATGAGGGGGAGATCATCTACCTTCGCCATGAAACCGACTCGATGGTAG
TTCTGGACCCCCAGTGGTTGTTCACATCGGTTTTCGGATCCCTGCTCGCC
CCGGACAACTTCCCTATCGATAAGGTGGCGAGGACTGCGGAGGACTACGT
CACCCTTGAGGAGATCACCCGTGTCTTCAGTGCAGTTGCCGACATCCCTC
TTCTGATCAAATTCCTCCAGGACTTCCAGCTCTGCCACACGTACGACGGT
CGCACCTTCATCCTCCCCAGCCTGCTGCAGCAGGAGATGGAAGAGGCGGC
GTGGTCTCCTGTGTCCAGCAAGGCTGTCTACTTCGGTACGCAGATCCGAG
GCCGCACGGAGATCGACAGCTTCTCGTGCGACCTGTTCCCGCGGCTGCAG
ACGCTGCTGATGCAGGTGCACCCTGACAAGCTCAGCCGGCCTCTCCTGTG
GAAGAACAGCGCCAAATGTACCGACGGGAAGGCCGAAGCGCTACTGCAGA
TCACACAGGACAAGAGGCAGCTCAACATCTTCGTCAGGAGCACGAAAGGC
AACAGGGAGGACTGCAACTCCATCATGGACCTCCTGAAGGACATGACGTA
CCGCCTGCTGCACGAGACCAGCCCAGGAGCCAGGTCACGGGACATGGTGC
TCAGCGCCTTGGACCTCCGGGAACACAGACCGCAGCCTCACGCCTACAGT
AGGGAAGTGGTGGAGGAGGCGGCGGATGCGGGCAGGGACGTCGTCCACCC
TAGAAGAAACATTCCGGAAGACGTCAAGGATATCCTGTTGAACCTCGGCA
ACCTGAAAGGCATGCTGGGACGGGTAGCCCAGAAGAGGCCGGAGCTGGTG
GAGACCCTGCGTCACATCAGCCCCATCCTGGACCACCTCCGCGCTGATGA
CGTCATCAACATGGAGGAGAACGACCGCATCCGGACCGCCAGGACTCCCC
AGGATGCAGCGCGCGAGCTGCTGGACATTCTGGAGGCCAAAGGTGAAAGT
GCATGTGTCAAGTTTCACTCTGTCCTTGAAACATGTGATGAGTATGCCGC
GAGTCTACTAAAGGAGAGACCGGTGTCTGAGAAGACAAGTTAGCTTCGCC
GGGCCACAGCTCTGGTGGAACTCTACAGAGAGCTGTTCCAGGAGTCACTG
GTGGTGTCACAGGAGGTGTTCCTGATCAATTGCATGGAAGCGGGGTCTTC
TGGGATACGCCGGCTGCGAGAAATGCTGGCAGCATTCAGGGACGATATGC
TGAAGCAAAGACCACAGGTCCCAAAGGTCTGCATCCAGTTGTCAGAGACC
ATTGAAGACTGTAGAGAGGAGAGGAAGGCGTTCCCAGTTATGGGATGGCA
GGACTACCTGACAGCTGTCAGGCAAGAAACGTATGGCACCCTCGAGGAAC
GCATAGTACAGCTGGCGTCATCGTACCTACATGATGAGGGGGAGATCATC
TACCTTCGCCATGAAACCGACTCGATGGTAGTTCTGGACCCCCAGTGGTT
GTTCACATCGGTTTTCGGATCCCTGCTCGCCCCGGACAACTTCCCTATCG
ATAAGGTGGCGAGGACTGCGGAGGACTACGTCACCCTTGAGGAGATCACC
CGTGTCTTCAGTGCAGTTGCCGACATCCCTCTTCTGATCAAATTCCTCCA
GGACTTCCAGCTCTGCCACACGTACGACGGTCGCACCTTCATCCTCCCCA
GCCTGCTGCAGCAGGAGATGGAAGAGGCGGCGTGGTCTCCTGTGTCCAGC
AAGGCTGTCTACTTCGGTACGCAGATCCGAGGCCGCACGGAGATCGACAG
CTTCTCGTGCGACCTGTTCCCGCGGCTGCAGACGCTGCTGATGCAGGTGC
ACCCTGACAAGCTCAGCCGGCCTCTCCTGTGGAAGAACAGCGCCAAATGT
ACCGACGGGAAGGCCGAAGCGCTACTGCAGATCACACAGGACAAGAGGCA
GCTCAACATCTTCGTCAGGAGCACGAAAGGCAACAGGGAGGACTGCAACT
CCATCATGGACCTCCTGAAGGACATGACGTACCGCCTGCTGCACGAGACC
AGCCCAGGAGCCAGGTCACGGGACATGGTGCTCAGCGCCTTGGACCTCCG
GGAACACAGACCGCAGCCTCACGCCTACAGTAGGGAAGTGGTGGAGGAGG
CGGCGGATGCGGGCAGGGACGTCGTCCACCCTAGAAGAAACATTCCGGAA
GACGTCAAGGATATCCTGTTGAACCTCGGCAACCTGAAAGGCATGCTGGG
ACGGGTAGCCCAGAAGAGGCCGGAGCTGGTGGAGACCCTGCGTCACATCA
GCCCCATCCTGGACCACCTCCGCGCTGATGACGTCATCAACATGGAGGAG
AACGACCGCATCCGGACCGCCAGGACTCCCCAGGATGCAGCGCGCGAGCT
GCTGGACATTCTGGAGGCCAAAGGTGAAAGTGCATGTGTCAAGTTTCACT
CTGTCCTTGAAACATGTGATGAGTATGCCGCGAGTCTACTAAAGGAGAGA
CCGGTGTCTGAGAAGACAAGTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000000 | genome | Sc0000000:817645..821171 - |
Properties
| Property Name | Value |
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| Transcript id | BL96582_cuf5 |
| Biotype | protein_coding |
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