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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96579_cuf3 >transcript:BL96579_cuf3-protein ID=transcript:BL96579_cuf3-protein|Name=transcript:BL96579_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=288bp
MDVNDSVITTVRLVADYVPQNPLSGPFEESWRSMTEHYTEYQIATWGSLF
FHEMTYFLICLPGFLYQFLPFMQKYKIQQSKPETWEAQLQCFKLLMFSHF
FIQMPLMCGTYHFTQWFNIPYDYDSIPPWYVLGLQIFGCFVVEDVWHYFL
HRVLHHKNYYKYVHKVHHNFQAPFGAVAEYAHPVETLVLGTGFFLGILFF
CSHFVQMWVWGLFRLLETIDVHSGYDIPYNPMHLLPCYTGARFHDFHHMN
FNGNYAPTFRWWDKLFGTDWQYKEFCNKQATKDGLKKD Run BLAST on NCBI mRNA from alignment at Sc0000000:3305183..3309451+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96579_cuf3 ID=transcript:BL96579_cuf3|Name=transcript:BL96579_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4269bp|location=Sequence derived from alignment at Sc0000000:3305183..3309451+ (Branchiostoma lanceolatum)
TGACCAGTCCTGCTTTGACAGCACTCCCCTATTGTCAGTCTCAATCTGTC
TCTGCGTCCAACATCTTCCCTTAAGGCCCTTAAAACACCGGAAACATGGA
TGTCAACGATTCTGTGATCACTACCGTCCGGCTTGTAGCCGACTACGTGC
CGCAGAATCCGTTAAGCGGGCCGTTCGAGGAGAGCTGGCGGTCCATGACT
GAGCACTACACCGAGTACCAGATCGCTACCTGGGGGTCCCTGTTTTTTCA
TGAGGTAAGGCCCGTTTTAGGTTTTGCGAAAGTAAGGAGGCGATGCATTT
TACACTAGTCGAATACTACACAGTGATTACTGTAACATGGTGGTTTTTGT
ATGTATGATAATATCTCGGCGCCTTTCTTGCATAAAATCAAAACTAGGTA
GGTCAAGATAAGTCACCTTGTCACATGTACATCTTTTTTCTATCGTATCT
GTTGCCTTGTGCCACCTGCGTGCGATGCATGGCAATTATTGCTGATAATG
GCACCTCGTCCCAAATGTTAGAAGGGAACGCAGGTTTAATCATTTGCGAT
TTGAAGTACATTTGTGTAACGTTTGGGGATTTGGGTCTTGTCACGGTGAT
GGACAGTCAGTTTGGGATTATTGAATCACATTCATAACTTGTGTTCAATA
GTCTTCAGCTATGAATTGATTTTTCTCAAATTATAATGAACGTTTGACAA
TGTTCGTATTGAATCGGAATGGCAAGTTGATTTATGATGCTAGGATTTGA
AGTACTGTGGTCAACCACAGTTGATTTATGATGCTAGGATTTGAAGTATT
GTGGTCAACCACAGTGTTTATTTTACGTAATGTGTATCCAGTTGTGTACA
TAGTCACTAGCGGTTTGGGATCTTTGTACCGTTCTATGGGTCACTTTTGT
ATCGTTCTTCAGATCACTGACCTCATGGCAGAAAACCCAGTAAAACAAAC
TTTACTCTTCTTTAGTGATAAGAATTTGGTCCACTTTTTCCACAGATGAC
CTACTTTCTGATCTGCCTTCCCGGGTTTCTCTACCAGTTTCTTCCTTTCA
TGCAGAAATACAAGATTCAGCAGGTAATGTATAAAATAAAACCACTACTA
TCCTAATTATTTACAGAACTGTTGTTGCTTATCCTTACTGTTTGGAATTA
ACAGAGGAAAGATGTTTTGTGTCCTTGTATAACAGTAATGTTCGCACTGT
TTTTTCACGGTATTTTACATTTTTTTAAGCCATGATGGAATCTGTTTAGA
AAGGCATATGATATAAAGTGTACATGAAAGAGTGAGTGAGTGAGAGAGAG
AGAGGGTGGGTGAGAGGAAGAAGAGAGAGAGTGAGAGAAAAAGAGAATGT
GTGTGTGAGGGAAAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGAGGGAAAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTNTGTGTGTGT
GTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAAAAACAGCAT
GAGAGAGGGAGGGAAATAGAGGGGAGAGGAAGAGAAAAGATTACTGAAAA
TGATTTCTTTCCCTCCAGAGCAAGCCTGAGACGTGGGAAGCCCAGCTGCA
GTGCTTCAAGCTGCTGATGTTCAGCCACTTCTTCATCCAGATGCCGCTGA
TGTGTGGAACCTACCACTTCACTCAGTGGTTCAACATCCCCTATGACTAC
GACTCTATCCCACCGTGGTAGGCTTTCTTTTTTTGGTAGTGATTCATTTA
CTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACT
CACTCATCCATTCATTTGTTCATGCACCTGCTTCCATCTATTCTTCTACT
CATCCTCCCATCCTCCCACCCATCCATCCATCCATCCATCCATCCATCCA
TCCATCCATGCATCCATCCATCCATCCATCCATCCATTCATTTTCCATAC
AACAGTTAAGTTTTCACTGAAAAGCAGTGCCATGCATTCCACATTCACAA
TCCGTAATTTGTACATAAAAAATCAAACTTTTTAAGACAAAGAATTGATT
CTTATGTAAACACATTTGTTCTCCCAGGTATGTCCTAGGCCTGCAGATAT
TTGGGTGTTTTGTAGTTGAAGACGTCTGGCACTACTTCCTGCACCGAGTT
CTGCACCATAAGAACTACTACAAGTATGTGCACAAGGTGCACCACAACTT
CCAGGTATGTACGTTGTACTATTAAAACTGCTGTAAATGATCTATTTTTG
TTGGGACTCCATTTCAGAGTAGAAGGGAAAATCAGGTTTTCACAGTGTTT
TAAGGTAAGCTACTAATAGTTGAAATGATTATGCATGCATTCTCAGGGGA
TGACCATTAGTATTGGCATTACTTGATTTTTAGAATTACACATGGAAATA
TTTCACAATAGTCTTAATTTTCTGTACCTGAATAACCCCATCCTCCTTGG
CAGGACTGTACTGTATGGCGGCATAGACTAATGCCTTGTATCGCAAGGCA
TCAAGTGTATGCCGCCGTACAGCCCTCTATAGGAGGATGGAGTGATGCTG
CCATAAAACAGTTTGTCATCTCTTGCTATCGTATAGGCCCCATTTGGAGC
AGTGGCGGAGTATGCCCACCCAGTGGAGACCCTGGGTGAGTGCTGGAAAT
TATTTTTTCTTCACGATAATTCAATGTTGTAATTCGAGTGGGAAAGAGGC
TTTCACAGCGTTTTAAGTTCGCAGCTGAAACATTTCTGTAGTACAGTAGA
AATACATTGGAAACGCATATTTGCAGTGCCATTAATTTGCAGTGAAGAGG
TCACTGCAAATATCTTGTACCTTTTGACTGTCTTTTGAACATAATATGAT
AACCTTATTACCGGGTTGATGAAGAGACAGAGAATTTGTCTCGAAAGCTC
CCCATAGCAATCTTTTTTATGTTGTGTGTAATGCTTAAATGTTTGTCAAA
AGTATAATATAAGTGAATGCACATTTGGTGTCATAAATGTCACATGAAAT
CTATCGCAATCATAACATGAAGAAAAGAACTTCTTAACTTTTTTTACCCT
TTGTACATTTACCCAGTGCTGGGAACCGGATTCTTCCTGGGCATCCTTTT
CTTCTGCAGCCACTTTGTTCAGATGTGGGTCTGGGGGCTGTTCCGTCTGC
TGGAAACCATAGATGTACACAGTGGGTACGACATCCCGTACAACCCAATG
CACCTCCTACCCTGCTATACAGGTAATTATCGTTATAGGAAGGATGTAAT
AAATATGTTTATGACTGTACGTATAATAGAGATATGAATGGATATATGGA
CACCATAGACGTGCACAGTGGGTACGACATCCCGTACAACCCGATGCACC
TCCTGCCCTGCTATACAGGTACATGTAATGATTGTTGTAGAAAGGGTGTA
TATATTTACGACTGTAGTCACTGTTCGTACGTATATATGAATGCATGTAT
GGAAGCCATAGACGTGCACAGTGGGTACGACATCCCGTACAACCCAATGC
ACCTACTACCATGCTATACAGGTACATGTAATAATTGTTGCAGAAAGGAT
GTATATACTAAAGACTGTAAGAACCAAGGACATTATATAATGTCCTTGTA
AGAACGTATAATAGAATAGATATATGAATGGATGTATGGAAACCATAGAT
GTGCACAGTGGATGCGACATCCCGTACAACACAATGCACCTCCTACTTTG
CTACACAGGTAATTATCGTTATAGGAGGGATATTTATATCTATGACTGAA
TGTATGTATGTAGAGATAGATAGATATGTGGATGGGTGGATAGAGGAATG
GATGAATAAAGCAATGATTGAATAGATAAATGGATAGATAGATGGATGAG
TTGATATATGGATAAAAGGAAAGGATGGATGGATAATATATGCACATGTA
TGTATAAATGATGCCTTGATTTGACTAGAGTGTTATATGACCCCATATAA
AGGACACACACTAGCAATAACATTATGGTACAGTGCCCTAAACACTATAG
TAAGACCACCTGTTTTATCATGCTATTAAACATGCATGATACGTTTTCCA
CCAGGCGCACGCTTCCACGACTTTCACCACATGAACTTCAATGGAAACTA
CGCCCCGACCTTCAGATGGTGGGACAAACTGTTCGGCACCGACTGGCAGT
ACAAGGAGTTCTGCAACAAGCAGGCTACTAAAGACGGACTGAAGAAGGAC
TAAGAAAAACCTAAGGAGTTAGGCAGCAAGCAGGCTGCTAAAGATGGACT
GAATGAATGAGGACTAGGA Coding sequence (CDS) from alignment at Sc0000000:3305183..3309451+ >transcript:BL96579_cuf3 ID=transcript:BL96579_cuf3|Name=transcript:BL96579_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=6069bp|location=Sequence derived from alignment at Sc0000000:3305183..3309451+ (Branchiostoma lanceolatum)
ATGGATGTCAACGATTCTGTGATCACTACCGTCCGGCTTGTAGCCGACTA
CGTGCCGCAGAATCCGTTAAGCGGGCCGTTCGAGGAGAGCTGGCGGTCCA
TGACTGAGCACTACACCGAGTACCAGATCGCTACCTGGGGGTCCCTGTTT
TTTCATGAGATGACCTACTTTCTGATCTGCCTTCCCGGGTTTCTCTACCA
GTTTCTTCCTTTCATGCAGAAATACAAGATTCAGCAGAGCAAGCCTGAGA
CGTGGGAAGCCCAGCTGCAGTGCTTCAAGCTGCTGATGTTCAGCCACTTC
TTCATCCAGATGCCGCTGATGTGTGGAACCTACCACTTCACTCAGTGGTT
CAACATCCCCTATGACTACGACTCTATCCCACCGTGGTATGTCCTAGGCC
TGCAGATATTTGGGTGTTTTGTAGTTGAAGACGTCTGGCACTACTTCCTG
CACCGAGTTCTGCACCATAAGAACTACTACAAGTATGTGCACAAGGTGCA
CCACAACTTCCAGGCCCCATTTGGAGCAGTGGCGGAGTATGCCCACCCAG
TGGAGACCCTGGTGCTGGGAACCGGATTCTTCCTGGGCATCCTTTTCTTC
TGCAGCCACTTTGTTCAGATGTGGGTCTGGGGGCTGTTCCGTCTGCTGGA
AACCATAGATGTACACAGTGGGTACGACATCCCGTACAACCCAATGCACC
TCCTACCCTGCTATACAGGCGCACGCTTCCACGACTTTCACCACATGAAC
TTCAATGGAAACTACGCCCCGACCTTCAGATGGTGGGACAAACTGTTCGG
CACCGACTGGCAGTACAAGGAGTTCTGCAACAAGCAGGCTACTAAAGACG
GACTGAAGAAGGACTAAATGGATGTCAACGATTCTGTGATCACTACCGTC
CGGCTTGTAGCCGACTACGTGCCGCAGAATCCGTTAAGCGGGCCGTTCGA
GGAGAGCTGGCGGTCCATGACTGAGCACTACACCGAGTACCAGATCGCTA
CCTGGGGGTCCCTGTTTTTTCATGAGATGACCTACTTTCTGATCTGCCTT
CCCGGGTTTCTCTACCAGTTTCTTCCTTTCATGCAGAAATACAAGATTCA
GCAGAGCAAGCCTGAGACGTGGGAAGCCCAGCTGCAGTGCTTCAAGCTGC
TGATGTTCAGCCACTTCTTCATCCAGATGCCGCTGATGTGTGGAACCTAC
CACTTCACTCAGTGGTTCAACATCCCCTATGACTACGACTCTATCCCACC
GTGGTATGTCCTAGGCCTGCAGATATTTGGGTGTTTTGTAGTTGAAGACG
TCTGGCACTACTTCCTGCACCGAGTTCTGCACCATAAGAACTACTACAAG
TATGTGCACAAGGTGCACCACAACTTCCAGGCCCCATTTGGAGCAGTGGC
GGAGTATGCCCACCCAGTGGAGACCCTGGTGCTGGGAACCGGATTCTTCC
TGGGCATCCTTTTCTTCTGCAGCCACTTTGTTCAGATGTGGGTCTGGGGG
CTGTTCCGTCTGCTGGAAACCATAGATGTACACAGTGGGTACGACATCCC
GTACAACCCAATGCACCTCCTACCCTGCTATACAGGCGCACGCTTCCACG
ACTTTCACCACATGAACTTCAATGGAAACTACGCCCCGACCTTCAGATGG
TGGGACAAACTGTTCGGCACCGACTGGCAGTACAAGGAGTTCTGCAACAA
GCAGGCTACTAAAGACGGACTGAAGAAGGACTAAATGGATGTCAACGATT
CTGTGATCACTACCGTCCGGCTTGTAGCCGACTACGTGCCGCAGAATCCG
TTAAGCGGGCCGTTCGAGGAGAGCTGGCGGTCCATGACTGAGCACTACAC
CGAGTACCAGATCGCTACCTGGGGGTCCCTGTTTTTTCATGAGATGACCT
ACTTTCTGATCTGCCTTCCCGGGTTTCTCTACCAGTTTCTTCCTTTCATG
CAGAAATACAAGATTCAGCAGAGCAAGCCTGAGACGTGGGAAGCCCAGCT
GCAGTGCTTCAAGCTGCTGATGTTCAGCCACTTCTTCATCCAGATGCCGC
TGATGTGTGGAACCTACCACTTCACTCAGTGGTTCAACATCCCCTATGAC
TACGACTCTATCCCACCGTGGTATGTCCTAGGCCTGCAGATATTTGGGTG
TTTTGTAGTTGAAGACGTCTGGCACTACTTCCTGCACCGAGTTCTGCACC
ATAAGAACTACTACAAGTATGTGCACAAGGTGCACCACAACTTCCAGGCC
CCATTTGGAGCAGTGGCGGAGTATGCCCACCCAGTGGAGACCCTGGTGCT
GGGAACCGGATTCTTCCTGGGCATCCTTTTCTTCTGCAGCCACTTTGTTC
AGATGTGGGTCTGGGGGCTGTTCCGTCTGCTGGAAACCATAGATGTACAC
AGTGGGTACGACATCCCGTACAACCCAATGCACCTCCTACCCTGCTATAC
AGGCGCACGCTTCCACGACTTTCACCACATGAACTTCAATGGAAACTACG
CCCCGACCTTCAGATGGTGGGACAAACTGTTCGGCACCGACTGGCAGTAC
AAGGAGTTCTGCAACAAGCAGGCTACTAAAGACGGACTGAAGAAGGACTA
AATGGATGTCAACGATTCTGTGATCACTACCGTCCGGCTTGTAGCCGACT
ACGTGCCGCAGAATCCGTTAAGCGGGCCGTTCGAGGAGAGCTGGCGGTCC
ATGACTGAGCACTACACCGAGTACCAGATCGCTACCTGGGGGTCCCTGTT
TTTTCATGAGATGACCTACTTTCTGATCTGCCTTCCCGGGTTTCTCTACC
AGTTTCTTCCTTTCATGCAGAAATACAAGATTCAGCAGAGCAAGCCTGAG
ACGTGGGAAGCCCAGCTGCAGTGCTTCAAGCTGCTGATGTTCAGCCACTT
CTTCATCCAGATGCCGCTGATGTGTGGAACCTACCACTTCACTCAGTGGT
TCAACATCCCCTATGACTACGACTCTATCCCACCGTGGTATGTCCTAGGC
CTGCAGATATTTGGGTGTTTTGTAGTTGAAGACGTCTGGCACTACTTCCT
GCACCGAGTTCTGCACCATAAGAACTACTACAAGTATGTGCACAAGGTGC
ACCACAACTTCCAGGCCCCATTTGGAGCAGTGGCGGAGTATGCCCACCCA
GTGGAGACCCTGGTGCTGGGAACCGGATTCTTCCTGGGCATCCTTTTCTT
CTGCAGCCACTTTGTTCAGATGTGGGTCTGGGGGCTGTTCCGTCTGCTGG
AAACCATAGATGTACACAGTGGGTACGACATCCCGTACAACCCAATGCAC
CTCCTACCCTGCTATACAGGCGCACGCTTCCACGACTTTCACCACATGAA
CTTCAATGGAAACTACGCCCCGACCTTCAGATGGTGGGACAAACTGTTCG
GCACCGACTGGCAGTACAAGGAGTTCTGCAACAAGCAGGCTACTAAAGAC
GGACTGAAGAAGGACTAAATGGATGTCAACGATTCTGTGATCACTACCGT
CCGGCTTGTAGCCGACTACGTGCCGCAGAATCCGTTAAGCGGGCCGTTCG
AGGAGAGCTGGCGGTCCATGACTGAGCACTACACCGAGTACCAGATCGCT
ACCTGGGGGTCCCTGTTTTTTCATGAGATGACCTACTTTCTGATCTGCCT
TCCCGGGTTTCTCTACCAGTTTCTTCCTTTCATGCAGAAATACAAGATTC
AGCAGAGCAAGCCTGAGACGTGGGAAGCCCAGCTGCAGTGCTTCAAGCTG
CTGATGTTCAGCCACTTCTTCATCCAGATGCCGCTGATGTGTGGAACCTA
CCACTTCACTCAGTGGTTCAACATCCCCTATGACTACGACTCTATCCCAC
CGTGGTATGTCCTAGGCCTGCAGATATTTGGGTGTTTTGTAGTTGAAGAC
GTCTGGCACTACTTCCTGCACCGAGTTCTGCACCATAAGAACTACTACAA
GTATGTGCACAAGGTGCACCACAACTTCCAGGCCCCATTTGGAGCAGTGG
CGGAGTATGCCCACCCAGTGGAGACCCTGGTGCTGGGAACCGGATTCTTC
CTGGGCATCCTTTTCTTCTGCAGCCACTTTGTTCAGATGTGGGTCTGGGG
GCTGTTCCGTCTGCTGGAAACCATAGATGTACACAGTGGGTACGACATCC
CGTACAACCCAATGCACCTCCTACCCTGCTATACAGGCGCACGCTTCCAC
GACTTTCACCACATGAACTTCAATGGAAACTACGCCCCGACCTTCAGATG
GTGGGACAAACTGTTCGGCACCGACTGGCAGTACAAGGAGTTCTGCAACA
AGCAGGCTACTAAAGACGGACTGAAGAAGGACTAAATGGATGTCAACGAT
TCTGTGATCACTACCGTCCGGCTTGTAGCCGACTACGTGCCGCAGAATCC
GTTAAGCGGGCCGTTCGAGGAGAGCTGGCGGTCCATGACTGAGCACTACA
CCGAGTACCAGATCGCTACCTGGGGGTCCCTGTTTTTTCATGAGATGACC
TACTTTCTGATCTGCCTTCCCGGGTTTCTCTACCAGTTTCTTCCTTTCAT
GCAGAAATACAAGATTCAGCAGAGCAAGCCTGAGACGTGGGAAGCCCAGC
TGCAGTGCTTCAAGCTGCTGATGTTCAGCCACTTCTTCATCCAGATGCCG
CTGATGTGTGGAACCTACCACTTCACTCAGTGGTTCAACATCCCCTATGA
CTACGACTCTATCCCACCGTGGTATGTCCTAGGCCTGCAGATATTTGGGT
GTTTTGTAGTTGAAGACGTCTGGCACTACTTCCTGCACCGAGTTCTGCAC
CATAAGAACTACTACAAGTATGTGCACAAGGTGCACCACAACTTCCAGGC
CCCATTTGGAGCAGTGGCGGAGTATGCCCACCCAGTGGAGACCCTGGTGC
TGGGAACCGGATTCTTCCTGGGCATCCTTTTCTTCTGCAGCCACTTTGTT
CAGATGTGGGTCTGGGGGCTGTTCCGTCTGCTGGAAACCATAGATGTACA
CAGTGGGTACGACATCCCGTACAACCCAATGCACCTCCTACCCTGCTATA
CAGGCGCACGCTTCCACGACTTTCACCACATGAACTTCAATGGAAACTAC
GCCCCGACCTTCAGATGGTGGGACAAACTGTTCGGCACCGACTGGCAGTA
CAAGGAGTTCTGCAACAAGCAGGCTACTAAAGACGGACTGAAGAAGGACT
AAATGGATGTCAACGATTCTGTGATCACTACCGTCCGGCTTGTAGCCGAC
TACGTGCCGCAGAATCCGTTAAGCGGGCCGTTCGAGGAGAGCTGGCGGTC
CATGACTGAGCACTACACCGAGTACCAGATCGCTACCTGGGGGTCCCTGT
TTTTTCATGAGATGACCTACTTTCTGATCTGCCTTCCCGGGTTTCTCTAC
CAGTTTCTTCCTTTCATGCAGAAATACAAGATTCAGCAGAGCAAGCCTGA
GACGTGGGAAGCCCAGCTGCAGTGCTTCAAGCTGCTGATGTTCAGCCACT
TCTTCATCCAGATGCCGCTGATGTGTGGAACCTACCACTTCACTCAGTGG
TTCAACATCCCCTATGACTACGACTCTATCCCACCGTGGTATGTCCTAGG
CCTGCAGATATTTGGGTGTTTTGTAGTTGAAGACGTCTGGCACTACTTCC
TGCACCGAGTTCTGCACCATAAGAACTACTACAAGTATGTGCACAAGGTG
CACCACAACTTCCAGGCCCCATTTGGAGCAGTGGCGGAGTATGCCCACCC
AGTGGAGACCCTGGTGCTGGGAACCGGATTCTTCCTGGGCATCCTTTTCT
TCTGCAGCCACTTTGTTCAGATGTGGGTCTGGGGGCTGTTCCGTCTGCTG
GAAACCATAGATGTACACAGTGGGTACGACATCCCGTACAACCCAATGCA
CCTCCTACCCTGCTATACAGGCGCACGCTTCCACGACTTTCACCACATGA
ACTTCAATGGAAACTACGCCCCGACCTTCAGATGGTGGGACAAACTGTTC
GGCACCGACTGGCAGTACAAGGAGTTCTGCAACAAGCAGGCTACTAAAGA
CGGACTGAAGAAGGACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:3305183..3309451 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96579_cuf3 |
| Biotype | protein_coding |
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