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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96560_cuf5 >transcript:BL96560_cuf5-protein ID=transcript:BL96560_cuf5-protein|Name=transcript:BL96560_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=146bp
WNTIHGLCRGEGEQKRYLSSSNEMRLAMLATSHNADFGDSRGFMATFNIS
TFSASRQVKNLPDDAGFICPCGWQLFRRNCYQTFRHHVPVNWEDSDVKCR
KLGANLTSVADRAEMEFLHQLLVTNVVVKRIADPMLFIGMVYTTST Run BLAST on NCBI mRNA from alignment at Sc0000047:1659347..1662219+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96560_cuf5 ID=transcript:BL96560_cuf5|Name=transcript:BL96560_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=2873bp|location=Sequence derived from alignment at Sc0000047:1659347..1662219+ (Branchiostoma lanceolatum)
GGTGGAACACGATCCACGGGCTTTGTCGCGGCGAGGGCGAACAGAAGCGT
TATTTGTCGAGCTCAAATGAAATGCGTTTGGCCATGTTGGCGACGAGCCA
CAATGCTGATTTTGGCGACAGTCGCGGGTTTATGGCAACGTTCAACATCA
GTACGTTCAGCGCTAGCCGGCAAGTGAAGAACCTACCTGATGATGCAGGT
AATAATGATACACTATTGCAAAAGTTGAACTATCTTCAGTACTACTTAGT
AGGTTCGATGAATAAAGTTATATTGTTTTTGAAGGATGACGTTATCCTCA
TATTCTATATCGAATTACTTAGGTTTCATATGCCCGTGTGGTTGGCAGTT
GTTCCGCCGAAACTGCTACCAGACCTTTCGACATCACGTACCAGTGAACT
GGGAGGATTCAGACGTCAAGTGCCGAAAATTGGGCGCCAACTTAACCAGC
GTCGCTGACCGGGCTGAAATGGAATTTCTCCACCAGCTTTTGGTCACCAA
CGTTGTCGTCAAACGCATCGCAGATCCAATGCTTTTCATTGGTATGGCAT
GTTATACTACGTTCATGTACAACTATGAAGTATAGTAATTCATTGACACA
AAAAAAGTTCATATTTGCATTATTTAACCGAACAGAAATTATGAATGAAA
ATGAGAAAATGATGAACAAACGCAAATCTGGCGTGTGCAAACAATGCAAC
TATTGTGAGAATTTGTAAAATCAATGAATAACGCATATCTACTTAATTTA
AAAGCAACAAATGTTAATCGATGGCTAATACACATTCGTTATCCCAAGGT
CTACACGACATCTACTTGAACCGAACCTTCACCTGGACCGATGGCATTCC
GGTAACTTACATGGATTGGTGAGTGTCCTCTCACGTGAAGCAATTAGACA
TGTTTAATTAGTCTGTCTATCTGCTTTTAAAGCCAGTCGGCCCATGAAAA
AGGACACATAATCGTTCACCCCATTATCGTACATAGATGCACACTTGAAG
AAATAACCAGAGTATCCGTTAGTACATGTATGCGCCCTAAGATAAAATGT
CTAAGGACATCAATGTAAATTCAACCCGTTATATTAGTCTACACTCATAT
TGTACACTTGATAGTTGACACAGCATTGTTTTTTTCCATCACATCTTAGG
TCACCCATGGATACCAGAACCTGGCTCCCACAGCCGGACGGCGCCAAGAT
CAACTTCTGCGTTGCCATAGTGATGAAGAACGTCTGGGGAACTGACCAGT
GGTACGACGTGGCCTGCGATGATCGAGCCACAAGATCCTTCATCTGCAAG
CGGGCGGCCGCAAGAGTAACTCGCCCGGGAGACAATGCCTAAACAACGCG
ATCAGAGATCTAGATGGCAGACTCGTCCATACTGCTGTGTGACCCTTCTA
GTCCATACATAAACATAGCAGCGCTGAAGATGCACGGCAATGCAGCATGG
TGTACATGTATGTATGATACTGCAGAAATGGTCAGATAAATGAACAGATT
TTGTTTACGGTGTTTACTTATTCTGAAGAACACAGGTAACCTAGCTTGAA
TGAAAAAAAATAACTACACTAGGATGCATTAATATAGAAGTAAGGTTGCA
CACTTAGCACTGGACAAGTGATGTAGTTGTCTTCTTATGAAATAAGATAC
AACCTAAGCATTTCCTTCGATTTTGTACGAAGAACCGTGACAGAGGTGCA
AGTGTCACCAACATGAAACTTGACCGATCTACAGTGGATGCCGCTCGAAG
ACAGAAGAAAAATGTCCAGACTAATACACTGGTGGGCGTTCCGACTAGTA
GGAAAAAGACATGAAAAAGGGCATGCCTTTAAGTACCAGATATCAAGCCA
ACATTGATTTGTTCGAAAATTCATTTTTTCATCAGCATTTCACATAGTAG
AGTGGAATTCTTTGCCACTGCAAGTACCGTAGGGACTAGTTTTAAACAAT
ACTTACAAAGGTTTGGTGTGACAGGTCGTTCAGTGTAATTAAATAATACC
ATTAGCCAAGCAGAAGCCGAAAAAAATAGTGATGGGCTAGACGATACACA
GAGGACATACCCTGGTTTGGACTGCTAGCTGTAGAATAGCCAAGAATTGT
TTGTTGTTATCATTTTTGCTTTAAAATATGTGGAAAAGTAACTATAAATT
CTACGCACATTAAAGCGACACGCTTATATTAGAGGTAACAATAGACTGAT
GAGGAATGCGATACCGGTTTTGCAACAGAAAGGGCTTGGGAGTCAGAGCG
TCAGACATGGCGTACATGTACATAGTTTAGACACTTGGGCCTTCAAGTCA
ATAGATTATTGGTGTCCCTGAGTTGATCTTTGAAATAGAGGTAACTACCG
GACAAAAAGCAAGTGCCGTGCATCTCATAACAGACGCAGAAGAGCTTGAG
GAAAATTTATCTAAATGTCTGTACAAGGATCGAGCATCTGTGGATAGGTT
TGTATGGAGCTGCTAAAAGATGCTCAGAAAGCACAAGAAATGTGCTTCAA
ATAGGACGAATAGCTTGGACGCATTGTCTAGAACTGTAAGTAGGCATTCA
AGTACAAACGCTTCTTGTTCTAGCGGAACATTGGAAATACCAATTATGGG
GCCTGATTATTTCTGGGCCAGACAGTTGTGAATAAAACATGGTCTCTTTT
GAATTTGTAAATATCTTTTATCCAAATTCAAAAGCATCAATGTCACTAAC
GTGTTACTCAATGTACAATAAGGACTAGCACACAATCTGATACCGTTAAC
CTACGTCTGCTATAATAAAAGGCAAGAATATAAAGACTTTGACGGAAGTA
GGACTTTTTTATTCTTATGTCTGAAGTTTCTTAAGTCCTGGGTATCCAAC
AAAAATATTGATTTCAAAATAAA Coding sequence (CDS) from alignment at Sc0000047:1659347..1662219+ >transcript:BL96560_cuf5 ID=transcript:BL96560_cuf5|Name=transcript:BL96560_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=1323bp|location=Sequence derived from alignment at Sc0000047:1659347..1662219+ (Branchiostoma lanceolatum)
TGGAACACGATCCACGGGCTTTGTCGCGGCGAGGGCGAACAGAAGCGTTA
TTTGTCGAGCTCAAATGAAATGCGTTTGGCCATGTTGGCGACGAGCCACA
ATGCTGATTTTGGCGACAGTCGCGGGTTTATGGCAACGTTCAACATCAGT
ACGTTCAGCGCTAGCCGGCAAGTGAAGAACCTACCTGATGATGCAGGTTT
CATATGCCCGTGTGGTTGGCAGTTGTTCCGCCGAAACTGCTACCAGACCT
TTCGACATCACGTACCAGTGAACTGGGAGGATTCAGACGTCAAGTGCCGA
AAATTGGGCGCCAACTTAACCAGCGTCGCTGACCGGGCTGAAATGGAATT
TCTCCACCAGCTTTTGGTCACCAACGTTGTCGTCAAACGCATCGCAGATC
CAATGCTTTTCATTGGTATGGTCTACACGACATCTACTTGATGGAACACG
ATCCACGGGCTTTGTCGCGGCGAGGGCGAACAGAAGCGTTATTTGTCGAG
CTCAAATGAAATGCGTTTGGCCATGTTGGCGACGAGCCACAATGCTGATT
TTGGCGACAGTCGCGGGTTTATGGCAACGTTCAACATCAGTACGTTCAGC
GCTAGCCGGCAAGTGAAGAACCTACCTGATGATGCAGGTTTCATATGCCC
GTGTGGTTGGCAGTTGTTCCGCCGAAACTGCTACCAGACCTTTCGACATC
ACGTACCAGTGAACTGGGAGGATTCAGACGTCAAGTGCCGAAAATTGGGC
GCCAACTTAACCAGCGTCGCTGACCGGGCTGAAATGGAATTTCTCCACCA
GCTTTTGGTCACCAACGTTGTCGTCAAACGCATCGCAGATCCAATGCTTT
TCATTGGTATGGTCTACACGACATCTACTTGATGGAACACGATCCACGGG
CTTTGTCGCGGCGAGGGCGAACAGAAGCGTTATTTGTCGAGCTCAAATGA
AATGCGTTTGGCCATGTTGGCGACGAGCCACAATGCTGATTTTGGCGACA
GTCGCGGGTTTATGGCAACGTTCAACATCAGTACGTTCAGCGCTAGCCGG
CAAGTGAAGAACCTACCTGATGATGCAGGTTTCATATGCCCGTGTGGTTG
GCAGTTGTTCCGCCGAAACTGCTACCAGACCTTTCGACATCACGTACCAG
TGAACTGGGAGGATTCAGACGTCAAGTGCCGAAAATTGGGCGCCAACTTA
ACCAGCGTCGCTGACCGGGCTGAAATGGAATTTCTCCACCAGCTTTTGGT
CACCAACGTTGTCGTCAAACGCATCGCAGATCCAATGCTTTTCATTGGTA
TGGTCTACACGACATCTACTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000047 | genome | Sc0000047:1659347..1662219 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96560_cuf5 |
| Biotype | protein_coding |
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