transcript:BL96553_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96553_cuf0
Unique Nametranscript:BL96553_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96553_cuf0

>transcript:BL96553_cuf0-protein ID=transcript:BL96553_cuf0-protein|Name=transcript:BL96553_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=201bp
LHYQFQYPNLPCEAALVETFPGDNLPCVAEGRCTSDVTVTCDDVSLEGTN
PTSVMMSVTAEVPDAPDQNTIRQFDDIDDGELDTRLATALESFKPVLRDV
DEVLSIVTSDMYGINVNGTMYNAESDTRQPTTVVDCPIGTVRLVVLCAAC
PPGTLYNSGTCQECPLGSYQELQGQTQCHYCPVGKTTLGLGATSRADCVD
I
Run BLAST on NCBI

mRNA from alignment at Sc0000009:1009990..1012634-

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96553_cuf0 ID=transcript:BL96553_cuf0|Name=transcript:BL96553_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2645bp|location=Sequence derived from alignment at Sc0000009:1009990..1012634- (Branchiostoma lanceolatum)
CTTCACTACCAGTTCCAGTATCCTAACCTGCCGTGTGAAGCAGCATTGGT
GGAGACTTTCCCAGGCGACAACCTCCCGTGTGTGGCTGAAGGACGGTGTA
CAAGTGACGTCACAGTGACGTGTGATGACGTCAGCCTCGAGGGGACCAAT
CCTACCTCAGTGATGATGTCTGTCACTGCGGAAGTGCCTGACGCGCCGGA
CCAAAACACCATACGGCAATTTGACGACATCGATGATGGAGAGCTTGACA
CCAGACGTACGAAATGCTCTTTTATTTGTATCTATAATATACACTGGGGG
TGTCCCTGCGGTGTAGTGGTCTGCGCTTCTGTTACTTACCACATCTGGTT
CTGATTACTTGGAACCAGGAGGCCCGAGTTCGTGCCCGGGTGGGACACCT
CTGGACAAGAGGCGCATTGAGTCATACCAAAGACGTTATAAAAATGGTAC
ATACTTACGAAACAGTATGGAAGTTAAACACACTCTACTGCCAGTGGACT
AGCACCCTAGGCCTGCTGCAGTGATTGCACCACAGTGTGGCCCAGGGCTA
TAAAACGGGAATGGGCACCGTCCTATACATCTTATGGTGTGGCAGGATTT
TAACTTGAACTACTAATCTACACCATCATTGTTCAATCAAAATGGTAAGC
AAGATAAATGTTATTTTGAGAAGCAAGTTGATTATTCGTTGTGACAACAA
ACACTTCTCAGATATTACATAGTATGGTTTATTTCTCAAAATAACTTTTC
CGCGCGACTCGGTGCCAGGTTTTGAATTTGCTGTGTTCATGACGTATGGA
ATGCATTTTTATCTCTAAAGTATCTATACTAATTTCTTACCGAGGTTGGA
GTCTATCACCAATCAATAAAAATCACCTAGCTTGTAAGCCTTAAGTTAGT
AGTAGTATACTTCAGCAGCAATGCGCTTTTTTTCTTAACCTATGATGGAA
CGCGGCATATAGTAAGAAATAGTTTTGTGATTTCTGTATCAACTTGCAAT
ATAATCACACTATGCAACCAAGAACATTGTGTAGGATGTCCTTGATGCAA
TAAACCATTCAAAAGGATAACAAAAAAAATATGTCTTTATCTTTCAACAG
TGGCTACGGCTTTGGAGAGTTTTAAGCCGGTATTACGTGACGTTGACGAG
GTTCTCTCAATTGTTACAAGTGACATGTACGGTATCAACGTCAATGGGAC
CATGTACAACGCTGAGTCGGACACAAGGCAACCAACAACGGTGGTCGACT
GTCCTATAGGCACTGTAAGACTGGTGGTTCTTTGTGGTAAGCCATTTGAC
TTGTCACAATTAAGACTTATTATTTTCTCTCCGCCGAGACCTTTACGTTT
GACAGAGTTATGTTTTGTAGAGGTATATGATATTCGTAAATAGTTTCATC
AGGTTGGTAAGTCACTGAATAAAAAGATTCTTTTTACACAACCAAGAGAT
TCATTCCACCGACCTTTCAGTGACCATTTGTCGCCTTCTTCAAGGCAATT
CTGACTGGTTCACATAGCAATGCAGTACAGGTGTTGCTGCTTATACATAA
TGAGATGCATTCCCAAACGCAACATATTTGGTCACCGAAATGTCGGTGGA
ATAAATCTCTTGGTTGTGTAAAAATAGGCTTTTTATTCGGTATATGGTAT
TACTTTTATGGCCTTGGAACGCGGCTTGAAACTTAGTTAGAAAGTAAACT
TTATATCAGAAACCTCAGTCCGGATGCAATTTATTTTTGCACGTTTCTTC
TTTTTCTTCTCCAAATATGTAAGTTCAATGCCCTGGACCAGACGGCTGTC
ACAATGGTTACTGATAAATTAGCAGACACCCTGTTTAGTGTTTGATTACA
TTATGTAGCAAGTGGCAGGACACAGCTGAAGGGGCTGGTCACCATATATA
GTGAATGCGTTTGAGGATGAAGAAATAGAGCAGTAGTTTGTCCGGATTGA
CCATGTGAAGATAACAATTATGTATTTGCTTGCAAATTTTACCTTCAAGT
TTCTTGTTGATTCTTAGACTGTGTTTACACACGCGTTGTCGAAGTCAACT
CAAAGTCACGGAGTAGACTCCAAGTTTGTGTAAACCGGGCCTTATTCTTG
TAGTCTTAATAAAGGCAACCAAAACAATTTCAGGGCCCGAAAAAAAGGAA
AAAAAAAAGGCTGACATTTTTATGGTAGTGAAATTTGCTAACATTGTTAA
GCACATTTGCGTAATAACTTCATACTTTTAGAATTTTAAAACCGCGCAAA
AACGTGCCGTACGATAATCCCCTTAGTTTCGCGAGCCTACAAAATCTCCG
GCCACGATTTTCAGTTCTCACATCACAACAACGTCATATTTTTGCATCAT
GGATGTTGCTATACATTGCGATGGTGCTGTTTGAACTAATCATGTATAGA
AAGGACTAAATGAATTGACTAACAAAATCCGATTTTTCGGACCCTTTGGT
TGCCTTTAACCACGTATTTTATTTCATTGCAGCGGCGTGTCCACCCGGTA
CGTTGTACAACAGCGGCACCTGTCAGGAATGCCCCCTAGGGTCGTACCAG
GAACTGCAGGGCCAGACCCAGTGTCATTATTGCCCTGTTGGTAAAACTAC
ACTTGGACTTGGAGCTACCAGCCGAGCTGACTGCGTCGATATCCC

Coding sequence (CDS) from alignment at Sc0000009:1009990..1012634-

>transcript:BL96553_cuf0 ID=transcript:BL96553_cuf0|Name=transcript:BL96553_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1809bp|location=Sequence derived from alignment at Sc0000009:1009990..1012634- (Branchiostoma lanceolatum)
CTTCACTACCAGTTCCAGTATCCTAACCTGCCGTGTGAAGCAGCATTGGT
GGAGACTTTCCCAGGCGACAACCTCCCGTGTGTGGCTGAAGGACGGTGTA
CAAGTGACGTCACAGTGACGTGTGATGACGTCAGCCTCGAGGGGACCAAT
CCTACCTCAGTGATGATGTCTGTCACTGCGGAAGTGCCTGACGCGCCGGA
CCAAAACACCATACGGCAATTTGACGACATCGATGATGGAGAGCTTGACA
CCAGACTGGCTACGGCTTTGGAGAGTTTTAAGCCGGTATTACGTGACGTT
GACGAGGTTCTCTCAATTGTTACAAGTGACATGTACGGTATCAACGTCAA
TGGGACCATGTACAACGCTGAGTCGGACACAAGGCAACCAACAACGGTGG
TCGACTGTCCTATAGGCACTGTAAGACTGGTGGTTCTTTGTGCGGCGTGT
CCACCCGGTACGTTGTACAACAGCGGCACCTGTCAGGAATGCCCCCTAGG
GTCGTACCAGGAACTGCAGGGCCAGACCCAGTGTCATTATTGCCCTGTTG
GTAAAACTACACTTGGACTTGGAGCTACCAGCCGAGCTGACTGCGTCGAT
ATCCTTCACTACCAGTTCCAGTATCCTAACCTGCCGTGTGAAGCAGCATT
GGTGGAGACTTTCCCAGGCGACAACCTCCCGTGTGTGGCTGAAGGACGGT
GTACAAGTGACGTCACAGTGACGTGTGATGACGTCAGCCTCGAGGGGACC
AATCCTACCTCAGTGATGATGTCTGTCACTGCGGAAGTGCCTGACGCGCC
GGACCAAAACACCATACGGCAATTTGACGACATCGATGATGGAGAGCTTG
ACACCAGACTGGCTACGGCTTTGGAGAGTTTTAAGCCGGTATTACGTGAC
GTTGACGAGGTTCTCTCAATTGTTACAAGTGACATGTACGGTATCAACGT
CAATGGGACCATGTACAACGCTGAGTCGGACACAAGGCAACCAACAACGG
TGGTCGACTGTCCTATAGGCACTGTAAGACTGGTGGTTCTTTGTGCGGCG
TGTCCACCCGGTACGTTGTACAACAGCGGCACCTGTCAGGAATGCCCCCT
AGGGTCGTACCAGGAACTGCAGGGCCAGACCCAGTGTCATTATTGCCCTG
TTGGTAAAACTACACTTGGACTTGGAGCTACCAGCCGAGCTGACTGCGTC
GATATCCTTCACTACCAGTTCCAGTATCCTAACCTGCCGTGTGAAGCAGC
ATTGGTGGAGACTTTCCCAGGCGACAACCTCCCGTGTGTGGCTGAAGGAC
GGTGTACAAGTGACGTCACAGTGACGTGTGATGACGTCAGCCTCGAGGGG
ACCAATCCTACCTCAGTGATGATGTCTGTCACTGCGGAAGTGCCTGACGC
GCCGGACCAAAACACCATACGGCAATTTGACGACATCGATGATGGAGAGC
TTGACACCAGACTGGCTACGGCTTTGGAGAGTTTTAAGCCGGTATTACGT
GACGTTGACGAGGTTCTCTCAATTGTTACAAGTGACATGTACGGTATCAA
CGTCAATGGGACCATGTACAACGCTGAGTCGGACACAAGGCAACCAACAA
CGGTGGTCGACTGTCCTATAGGCACTGTAAGACTGGTGGTTCTTTGTGCG
GCGTGTCCACCCGGTACGTTGTACAACAGCGGCACCTGTCAGGAATGCCC
CCTAGGGTCGTACCAGGAACTGCAGGGCCAGACCCAGTGTCATTATTGCC
CTGTTGGTAAAACTACACTTGGACTTGGAGCTACCAGCCGAGCTGACTGC
GTCGATATC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96553gene:BL96553Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96553_cuf0-E1BL96553_cuf0-E1-1564476830-89142Branchiostoma lanceolatumexon
BL96553_cuf0-E2BL96553_cuf0-E2-1564476830-89140Branchiostoma lanceolatumexon
BL96553_cuf0-E3BL96553_cuf0-E3-1564476830-89138Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96553_cuf0transcript:BL96553_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000009genomeSc0000009:1009990..1012634 -
Properties
Property NameValue
Transcript idBL96553_cuf0
Biotypeprotein_coding