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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96534_cuf0 >transcript:BL96534_cuf0-protein ID=transcript:BL96534_cuf0-protein|Name=transcript:BL96534_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=267bp
FAIGVGSFDHSELLQITNNNAGRVFELADYNVLAHSINRIVRALCNDTWP
VTTRAYTSDIRLVGGSGDHEGRVEVFHDGQWGTICDDGWGQDDANVVCRQ
LGFPGAERATYSASFGRGSGQIWLDDVGCSGSEPRLQNCSHRGWGVLRYC
GHYEDAGVICYLQAPGPRLVGGTGDHEGRVEVHHDGQWGTICDDNWSLRD
AEVMCRQLGFPGAKAAPCCSSFGRGYGQIWLDDVACTGSEANLQSCSHSG
WGSHNCDHDEDAGVICT Run BLAST on NCBI mRNA from alignment at Sc0000006:6905698..6907366- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96534_cuf0 ID=transcript:BL96534_cuf0|Name=transcript:BL96534_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1669bp|location=Sequence derived from alignment at Sc0000006:6905698..6907366- (Branchiostoma lanceolatum)
GTTCGCCATCGGTGTGGGCAGCTTTGACCACTCGGAACTGCTACAGATCA
CCAACAACAACGCAGGCCGTGTGTTTGAGCTCGCCGACTATAACGTCCTG
GCTCACAGTATCAACCGGATTGTTCGCGCCCTCTGCAACGGTTAGTGCAA
AGACACACACATGGACGCTCAGTGTGGGGTATCTAGCCAAGTATTGTTAA
TAAAGTTTTACCACCACTTACGAAGTAACTATGTGTAACCTAAACGTCTT
CGGCAGTACATATGAAAAAAATTAGATCACCTGTATTTTCTTGACTTTTC
TATGCATTTGGTGCTTTAGATTTTGATTGATATTACCATCTGAGTTACTT
AATCGTGATTTCAGTATTTTTAGTTTTGTTATTAGTACATTCAAAACGAC
TATCTAATCTTCCGCATTGTTCAGTGTTTGCTTTCGTGTAAGACATTTGA
TCTCTCTTGCAGACACATGGCCTGTGACGACAAGAGCTTACACTAGTGGT
AAGTGTTCTATTCTAAAAGTTAAAATCACATGTTCCCCTTTCACTTCATA
CATAACCCACATGAAATCAAAATGACCTCGGAAATGAGCAAAATAATTTT
CGACAACACCTGGGCTTAGGGTTGTGTGAAGGAGCATTATATTGGGTCTA
AATATTTGGTTCTCTCTTTGCCCACAAGATATCCGACTGGTCGGCGGATC
TGGTGACCACGAGGGACGGGTGGAAGTTTTCCACGACGGACAGTGGGGGA
CGATATGTGACGACGGTTGGGGTCAGGACGATGCCAATGTGGTCTGCCGC
CAGCTGGGGTTCCCTGGGGCTGAGCGGGCAACATATAGTGCATCTTTCGG
CCGGGGGTCTGGGCAGATCTGGCTGGACGATGTAGGCTGCAGCGGAAGTG
AGCCACGTCTGCAAAACTGTAGCCACAGAGGATGGGGCGTCCTAAGGTAT
TGCGGACATTATGAGGATGCTGGAGTTATCTGCTATCGTAAGTTTTAGTG
TTTCGTTGTTGTTTTCTAGGGATTAATATGTACATGTTATTGATGCTAAC
TGATGAAGAAGGGCGTAGATTGGCTGATCAGTTTTGCCGTTTGGCAAGGT
CCTGGAAGGTGTTGTCAATGGTGTCAACAGAATGAGATTGTTTCTCTGAA
AGCGTGCAGTGGATTTAAAAAAATGCATTCCATAGACTCCCCTCAAAGTG
AAAATGCCCACTACGTTTATTTTTTTCATTTTCATGTCGATATCTCTGCG
TAGTTTGAATCTGCGCGCTGTAATGATAGAATAAACATAATAATCTTATC
TTGGAATAGACATAGAAATATTTATTATAAAAAAATACGATACTTCACAG
TACAAGCACCAGGTCCCCGTCTCGTTGGTGGAACCGGCGACCATGAGGGA
AGGGTGGAAGTTCACCATGACGGACAATGGGGGACGATCTGTGACGACAA
CTGGAGCCTAAGGGACGCCGAGGTAATGTGCCGTCAGCTGGGGTTCCCTG
GTGCCAAAGCAGCGCCATGTTGCTCTTCCTTTGGGCGGGGTTACGGGCAG
ATCTGGCTGGATGATGTAGCCTGCACCGGAAGTGAAGCAAATCTGCAAAG
CTGCAGTCACAGCGGATGGGGCAGCCATAATTGCGACCATGATGAAGATG
CTGGGGTTATCTGTACCAG Coding sequence (CDS) from alignment at Sc0000006:6905698..6907366- >transcript:BL96534_cuf0 ID=transcript:BL96534_cuf0|Name=transcript:BL96534_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3204bp|location=Sequence derived from alignment at Sc0000006:6905698..6907366- (Branchiostoma lanceolatum)
TTCGCCATCGGTGTGGGCAGCTTTGACCACTCGGAACTGCTACAGATCAC
CAACAACAACGCAGGCCGTGTGTTTGAGCTCGCCGACTATAACGTCCTGG
CTCACAGTATCAACCGGATTGTTCGCGCCCTCTGCAACGACACATGGCCT
GTGACGACAAGAGCTTACACTAGTGATATCCGACTGGTCGGCGGATCTGG
TGACCACGAGGGACGGGTGGAAGTTTTCCACGACGGACAGTGGGGGACGA
TATGTGACGACGGTTGGGGTCAGGACGATGCCAATGTGGTCTGCCGCCAG
CTGGGGTTCCCTGGGGCTGAGCGGGCAACATATAGTGCATCTTTCGGCCG
GGGGTCTGGGCAGATCTGGCTGGACGATGTAGGCTGCAGCGGAAGTGAGC
CACGTCTGCAAAACTGTAGCCACAGAGGATGGGGCGTCCTAAGGTATTGC
GGACATTATGAGGATGCTGGAGTTATCTGCTATCTACAAGCACCAGGTCC
CCGTCTCGTTGGTGGAACCGGCGACCATGAGGGAAGGGTGGAAGTTCACC
ATGACGGACAATGGGGGACGATCTGTGACGACAACTGGAGCCTAAGGGAC
GCCGAGGTAATGTGCCGTCAGCTGGGGTTCCCTGGTGCCAAAGCAGCGCC
ATGTTGCTCTTCCTTTGGGCGGGGTTACGGGCAGATCTGGCTGGATGATG
TAGCCTGCACCGGAAGTGAAGCAAATCTGCAAAGCTGCAGTCACAGCGGA
TGGGGCAGCCATAATTGCGACCATGATGAAGATGCTGGGGTTATCTGTAC
CTTCGCCATCGGTGTGGGCAGCTTTGACCACTCGGAACTGCTACAGATCA
CCAACAACAACGCAGGCCGTGTGTTTGAGCTCGCCGACTATAACGTCCTG
GCTCACAGTATCAACCGGATTGTTCGCGCCCTCTGCAACGACACATGGCC
TGTGACGACAAGAGCTTACACTAGTGATATCCGACTGGTCGGCGGATCTG
GTGACCACGAGGGACGGGTGGAAGTTTTCCACGACGGACAGTGGGGGACG
ATATGTGACGACGGTTGGGGTCAGGACGATGCCAATGTGGTCTGCCGCCA
GCTGGGGTTCCCTGGGGCTGAGCGGGCAACATATAGTGCATCTTTCGGCC
GGGGGTCTGGGCAGATCTGGCTGGACGATGTAGGCTGCAGCGGAAGTGAG
CCACGTCTGCAAAACTGTAGCCACAGAGGATGGGGCGTCCTAAGGTATTG
CGGACATTATGAGGATGCTGGAGTTATCTGCTATCTACAAGCACCAGGTC
CCCGTCTCGTTGGTGGAACCGGCGACCATGAGGGAAGGGTGGAAGTTCAC
CATGACGGACAATGGGGGACGATCTGTGACGACAACTGGAGCCTAAGGGA
CGCCGAGGTAATGTGCCGTCAGCTGGGGTTCCCTGGTGCCAAAGCAGCGC
CATGTTGCTCTTCCTTTGGGCGGGGTTACGGGCAGATCTGGCTGGATGAT
GTAGCCTGCACCGGAAGTGAAGCAAATCTGCAAAGCTGCAGTCACAGCGG
ATGGGGCAGCCATAATTGCGACCATGATGAAGATGCTGGGGTTATCTGTA
CCTTCGCCATCGGTGTGGGCAGCTTTGACCACTCGGAACTGCTACAGATC
ACCAACAACAACGCAGGCCGTGTGTTTGAGCTCGCCGACTATAACGTCCT
GGCTCACAGTATCAACCGGATTGTTCGCGCCCTCTGCAACGACACATGGC
CTGTGACGACAAGAGCTTACACTAGTGATATCCGACTGGTCGGCGGATCT
GGTGACCACGAGGGACGGGTGGAAGTTTTCCACGACGGACAGTGGGGGAC
GATATGTGACGACGGTTGGGGTCAGGACGATGCCAATGTGGTCTGCCGCC
AGCTGGGGTTCCCTGGGGCTGAGCGGGCAACATATAGTGCATCTTTCGGC
CGGGGGTCTGGGCAGATCTGGCTGGACGATGTAGGCTGCAGCGGAAGTGA
GCCACGTCTGCAAAACTGTAGCCACAGAGGATGGGGCGTCCTAAGGTATT
GCGGACATTATGAGGATGCTGGAGTTATCTGCTATCTACAAGCACCAGGT
CCCCGTCTCGTTGGTGGAACCGGCGACCATGAGGGAAGGGTGGAAGTTCA
CCATGACGGACAATGGGGGACGATCTGTGACGACAACTGGAGCCTAAGGG
ACGCCGAGGTAATGTGCCGTCAGCTGGGGTTCCCTGGTGCCAAAGCAGCG
CCATGTTGCTCTTCCTTTGGGCGGGGTTACGGGCAGATCTGGCTGGATGA
TGTAGCCTGCACCGGAAGTGAAGCAAATCTGCAAAGCTGCAGTCACAGCG
GATGGGGCAGCCATAATTGCGACCATGATGAAGATGCTGGGGTTATCTGT
ACCTTCGCCATCGGTGTGGGCAGCTTTGACCACTCGGAACTGCTACAGAT
CACCAACAACAACGCAGGCCGTGTGTTTGAGCTCGCCGACTATAACGTCC
TGGCTCACAGTATCAACCGGATTGTTCGCGCCCTCTGCAACGACACATGG
CCTGTGACGACAAGAGCTTACACTAGTGATATCCGACTGGTCGGCGGATC
TGGTGACCACGAGGGACGGGTGGAAGTTTTCCACGACGGACAGTGGGGGA
CGATATGTGACGACGGTTGGGGTCAGGACGATGCCAATGTGGTCTGCCGC
CAGCTGGGGTTCCCTGGGGCTGAGCGGGCAACATATAGTGCATCTTTCGG
CCGGGGGTCTGGGCAGATCTGGCTGGACGATGTAGGCTGCAGCGGAAGTG
AGCCACGTCTGCAAAACTGTAGCCACAGAGGATGGGGCGTCCTAAGGTAT
TGCGGACATTATGAGGATGCTGGAGTTATCTGCTATCTACAAGCACCAGG
TCCCCGTCTCGTTGGTGGAACCGGCGACCATGAGGGAAGGGTGGAAGTTC
ACCATGACGGACAATGGGGGACGATCTGTGACGACAACTGGAGCCTAAGG
GACGCCGAGGTAATGTGCCGTCAGCTGGGGTTCCCTGGTGCCAAAGCAGC
GCCATGTTGCTCTTCCTTTGGGCGGGGTTACGGGCAGATCTGGCTGGATG
ATGTAGCCTGCACCGGAAGTGAAGCAAATCTGCAAAGCTGCAGTCACAGC
GGATGGGGCAGCCATAATTGCGACCATGATGAAGATGCTGGGGTTATCTG
TACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000006 | genome | Sc0000006:6905698..6907366 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96534_cuf0 |
| Biotype | protein_coding |
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