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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96519_cuf5 >transcript:BL96519_cuf5-protein ID=transcript:BL96519_cuf5-protein|Name=transcript:BL96519_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=286bp
MKDFKMVCPENMFPLALSLLAVTFLPVVFGQQIDFGCVLKHCSKETIVCV
ANTTCRDALTCLGGCGSGSNMTCPVDCLFSYGYEDEQFLKLLSCTTVQNK
CMSNVPSTFNCTKPQKLALNFTFDMLKGRWYGVRGRNPPQDCYGCYSYLY
VPDPTRPKGDYVMTNTFDFKTLTGETRHIKIEFSEEPTANPAIWKATGST
LGVKGLSEVNEEWRAVALAPDHADGDTLLTYYCGTSMGIGYEGMMLFSRS
QTLSSGAYHAAKTAALAHGYDLDKFCSPDQAHCSKR Run BLAST on NCBI mRNA from alignment at Sc0000006:4285439..4289861+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96519_cuf5 ID=transcript:BL96519_cuf5|Name=transcript:BL96519_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=4423bp|location=Sequence derived from alignment at Sc0000006:4285439..4289861+ (Branchiostoma lanceolatum)
CTTTTAGACATTGGAGTTTGGACGTTCTTGAATGAAAGACTTCAAAATGG
TGTGCCCTGAAAATATGTTTCCCCTCGCCTTATCTCTGCTTGCCGTAACA
TTTTTGCCAGTCGTGTTTGGCCAGCAGATTGACTTCGGATGTGTTCTAAA
ACACTGTAGTAAAGAGACGATCGTCTGTGTCGCCAACACGACCTGCCGTG
ATGCCCTCACCTGCCTTGGTGGCTGCGGTAGCGGTAGCAACATGACCTGC
CCCGTGGACTGTCTCTTCTCCTATGGGTATGGTATTGATGGTGCATGTAC
ATGTTTGTGTGTAAATGTATTCCATGTGTGTGTGTGTGTGTGTTTAGTGT
GCGTGTAACAAGTGTGTAGTAAGTGCTGTGCTTAGGCTCATAACAAATGT
GACCCTTGTATCATGTACATGTAGTTACTTTGTTTTCGTTGTTCTTGATA
AGCTTTGATTGAGTCTTGATGATTTTTTTTACCACATCGAAAATACATAT
GATATAGAAATGACATAAGACCCAACATGCATGTTACAACTTGCCTATGG
TGTGCACGACATGGTGTACAAACTTACGCTACTTCGCTTCAGGTACGAAG
ACGAGCAGTTTCTCAAGTTATTATCCTGTACGACTGTCCAAAACAAGTGT
ATGTCAAATGTGCCATCAACCTTCAACTGTACCAAGCCACAGAAACTGGC
ACTGAATTTTACTTTTGATATGGTAAGGCATACACTTCAGTTATTTCAGT
TGAAAATCCTACCCTGATTTCTTGAATCATTGCTTCAAGTAACAGCGTTT
TAGCGATAGAACCTCCTTGGTTTTAGTAACTTTTAAAATAGAATTTTCAC
ATTACCTGTTACTTTATAGGTTGATAAAGGTAAACAATATTCTAAAGACC
ATTCTGTCTCTACAACAGAGGGGTAATGGATGTTAGTTAAAACTTCCAGA
AGTACTAGTAATCTCCGTATTCAATCCAGCTGTTAGGAGATCGGATTGTT
TAAAGATAGATCTATCATTACTTTGCTATTCTATTAGAATTGCCCCTTCT
ACAATCACGAAAGAAAGGAGCAGTTTAAAGAAGATACCAAATTCCATCCT
TATTTCTTCACGTTTACAGACAAAACGAAAACTACGTATACTCTCCTCTT
AACACAAAACCCACACATCACAGAAAAAGTGGGATCATTCGTCTTCCACA
GCTGTCTTGGAAAAAGAAGTGAAACCCAATAAGTAAGAATTTATTGTCAT
TATTTAGACTAGTCACATGACTCTGTCCGTCCTTTTCATTTTACATGTCT
TGCAATTAGCCTCCGGGCAAGAACTTCTGATAAACTTTCTATCCAACTTT
CAGCTGAAAGGACGGTGGTATGGCGTAAGAGGCAGGAACCCGCCTCAGGA
CTGCTACGGCTGTTACTCTTACCTCTACGTACCGGACCCAACCCGACCAA
AGGGTGATTATGTCATGACAAACACCTTCGATTTCAAGACGCTTACTGGT
AAGCCAACTACTGTAATTCTTGATCTGTTAACTGTAACTTTATTTTAGCT
GATTTAACTGTCACTAGTCAACAGCTAAAATTTCATCATCGCTGATATTT
GATCACTAATACTTGAGACAGTAATGTTTGTTCCCACCGTTAAAATTAAG
TGCCGTGACCTACTCCATTTTCCCAAAACCGTTATATTTTCCTGCCGCTA
ACGTTATATTAAAGTGATTTACAGTATATTCGAGTGAGACAGGTTCACTT
TTTTGGCGACGCCTCAAGGGCGGAGGCATTATTTTACAGTATTTCGATCG
CGCTGAAAATAATTTTATAAACTGCACGAATGCGAATCCCTATAGACCCA
TTTTTTTTATTTGCATAGACTTTGATATTATGATCATTGTGCTCCAATTG
GTTTCAGCTGGGAAAAAAATTCTATGAATCTCCCTTCAGTGTACTGTAGC
GTGCTAGTCTCTACCAGACTAACCGCGTCGGCTATGGAGAGAACATTTGC
CGGGGGACTTTGGCCATGGAGGATAACATTCCCATCTTATTTGACCTTAT
CTCCGTAGCCGACTCCCTTCATACAATTGACTCTATTTGGCCAATTTCTA
CTATTTTCCCAGCGACCCGCGGAGACTGGTAGAGGCTAGTAGCGTGCGTG
CCTCTGGAACAAGAGGTTGGAAGTTCGAATCTCGGCTGTTGACGCTCACG
CTAGAAATGGTTGCAGACCTTATAGGATGGGACTAGCACTGTTCACTGAT
TGAATTTGCCGGGAAAAAAGAGCTAAGGAAATTTCCCCGGTACAACGAAC
CTGTAAACAGTATACATAGTGTCTGTCTTCTCTGTCATGACCACATATGG
TAAATGCAGAAACGTTCGCGATGGTTTTATGTTCACGGTTTTCACGGTAA
GCTCTCTGCCGCGAACTTAAAATAACCGCGAACACTTTTCAACTGTGTTT
CTGTAGCGCTACTATATATATTGTTTCGAACGCGAACTGAAAACCATCGC
GAACAGTCCATTGAGGATAAGATGTCCTTGGCTCTTCAGCGAGCTAAATT
GGTTCAAGATCACTTTTCCTTTCTTTCACTTTCCAAAGGAGAAACACGCC
ACATCAAAATTGAGTTTTCAGAGGAACCAACCGCAAACCCTGCTATCTGG
AAGGCGACTGGATCGACACTGGGTGTGAAGGGGCTATCGGAGGTGAACGA
AGAATGGCGGGCTGTTGCCTTGGCCCCCGACCATGCCGACGGGGACACTC
TCCTCACCTACTACTGCGGAACCTCTATGGGGATTGGGTACGAGGGCATG
ATGCTGTTCTCTCGTTCCCAGACCCTCTCAAGTGGTGCCTACCATGCGGT
CAAGACAGCTGCGCTGGCGCACGGGTACGACTTGGACAAATTCTGTTCCC
CGGACCAGGCCCACTGCTCCAAACGTTGAACATNAGAGCTAAGGAAATTT
CCCCGGTACAACGAACCTGTAAACAGTATACATAGTGTCTGTCTTCTCTG
TCATGACCACATATGGTAAATGCAGAAACGTTCGCGATGGTTTTATGTTC
ACGGTTTTCACGGTAAGCTCTCTGCCGCGAACTTAAAATAACCGCGAACA
CTTTTCAACTGTGTTTCTGTAGCGCTACTATATATATTGTTTCGAACGCG
AACTGAAAACCATCGCGAACAGTCCATTGAGGATAAGATGTCCTTGGCTC
TTCAGCGAGCTAAATTGGTTCAAGATCACTTTTCCTTTCTTTCACTTTCC
AAAGGAGAAACACGCCACATCAAAATTGAGTTTTCAGAGGAACCAACCGC
AAACCCTGCTATCTGGAAGGCGACTGGATCGACACTGGGTGTGAAGGGGC
TATCGGAGGTGAACGAAGAATGGCGGGCTGTTGCCTTGGCCCCCGACCAT
GCCGACGGGGACACTCTCCTCACCTACTACTGCGGAACCTCTATGGGGAT
TGGGTACGAGGGCATGATGCTGTTCTCTCGTTCCCAGACCCTTTCAAGTG
GTGCCTACCATGCGGCCAAGACAGCTGCGCTGGCGCACGGGTACGACTTG
GACAAATTCTGTTCCCCGGACCAGGCCCACTGCTCCAAACGTTGAACATA
TAGCTTCCTTCGCCGAGACCTTGGTATTTGGGGCGGCAGCGCTGATTTGC
GCCAGTATTCAACAACCAGGTTCTATGCTATTAGGCCTTTGAGAGCCTGG
CCCATGTTAAAAATCAGATCAGAGCTCCCGCCAAAGAATAAACGCCGACC
ACACCTAGAAGGTCCGGGCATAAGCAAACCGTAATGTCTGTTCCAACTTC
TAAGTAATTTAACTGATATCCCACCTGGGCCCTGTTGCAAACTTTCCTTT
TTTTTCATTTTCACGTCTGAATAAAACCTGTGTACTGAGTAGTCCGAGGA
TGTATTGATTCCATAGAGTTCAAGGTGCAATCTAAAGATTGTGATGGAAC
TGTAAAGGTTTGTCCGAGGACTAACTTGAAGCCAAAGTCTAGTCCTAGCG
ACTTAAGAGTGAAGTGCATCCGTCCGGACAACCCTTACCTTGCAGGTCGA
CAAAGGGCCGAATCCTTGAAAATTTTGGCTCAATCTGGAGAATTTGGATG
GCTGATATGATACATCAGAAACGAGGGGTCAAAGGTAGGGTTTCTTTTAT
GGTTTCTTTACTACTGGCAGCTTTTTTCGGAGTTTGAGCTGAAAAAAAAT
ACCCTCTGTTTTCTTAGCATGGTTATCAAATATACCCTTGTGACTTTCTG
GTGGAGAAGAGTATTTAAGATTGAAATTTTGGTCAGTAGTAGTACTTTTA
TGAAGCCTTGTTTCCTTGTGTTCTAACTCGGTTTCCTTTGAGAAGCCCGA
TGTCAGCCCCAAACATGTTCTTAGGTGGAACAGATAAATCACCAAATGCC
CAACACAAGGGTTTTGACACAAA Coding sequence (CDS) from alignment at Sc0000006:4285439..4289861+ >transcript:BL96519_cuf5 ID=transcript:BL96519_cuf5|Name=transcript:BL96519_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=4305bp|location=Sequence derived from alignment at Sc0000006:4285439..4289861+ (Branchiostoma lanceolatum)
ATGAAAGACTTCAAAATGGTGTGCCCTGAAAATATGTTTCCCCTCGCCTT
ATCTCTGCTTGCCGTAACATTTTTGCCAGTCGTGTTTGGCCAGCAGATTG
ACTTCGGATGTGTTCTAAAACACTGTAGTAAAGAGACGATCGTCTGTGTC
GCCAACACGACCTGCCGTGATGCCCTCACCTGCCTTGGTGGCTGCGGTAG
CGGTAGCAACATGACCTGCCCCGTGGACTGTCTCTTCTCCTATGGGTACG
AAGACGAGCAGTTTCTCAAGTTATTATCCTGTACGACTGTCCAAAACAAG
TGTATGTCAAATGTGCCATCAACCTTCAACTGTACCAAGCCACAGAAACT
GGCACTGAATTTTACTTTTGATATGCTGAAAGGACGGTGGTATGGCGTAA
GAGGCAGGAACCCGCCTCAGGACTGCTACGGCTGTTACTCTTACCTCTAC
GTACCGGACCCAACCCGACCAAAGGGTGATTATGTCATGACAAACACCTT
CGATTTCAAGACGCTTACTGGAGAAACACGCCACATCAAAATTGAGTTTT
CAGAGGAACCAACCGCAAACCCTGCTATCTGGAAGGCGACTGGATCGACA
CTGGGTGTGAAGGGGCTATCGGAGGTGAACGAAGAATGGCGGGCTGTTGC
CTTGGCCCCCGACCATGCCGACGGGGACACTCTCCTCACCTACTACTGCG
GAACCTCTATGGGGATTGGGTACGAGGGCATGATGCTGTTCTCTCGTTCC
CAGACCCTTTCAAGTGGTGCCTACCATGCGGCCAAGACAGCTGCGCTGGC
GCACGGGTACGACTTGGACAAATTCTGTTCCCCGGACCAGGCCCACTGCT
CCAAACGTTGAATGAAAGACTTCAAAATGGTGTGCCCTGAAAATATGTTT
CCCCTCGCCTTATCTCTGCTTGCCGTAACATTTTTGCCAGTCGTGTTTGG
CCAGCAGATTGACTTCGGATGTGTTCTAAAACACTGTAGTAAAGAGACGA
TCGTCTGTGTCGCCAACACGACCTGCCGTGATGCCCTCACCTGCCTTGGT
GGCTGCGGTAGCGGTAGCAACATGACCTGCCCCGTGGACTGTCTCTTCTC
CTATGGGTACGAAGACGAGCAGTTTCTCAAGTTATTATCCTGTACGACTG
TCCAAAACAAGTGTATGTCAAATGTGCCATCAACCTTCAACTGTACCAAG
CCACAGAAACTGGCACTGAATTTTACTTTTGATATGCTGAAAGGACGGTG
GTATGGCGTAAGAGGCAGGAACCCGCCTCAGGACTGCTACGGCTGTTACT
CTTACCTCTACGTACCGGACCCAACCCGACCAAAGGGTGATTATGTCATG
ACAAACACCTTCGATTTCAAGACGCTTACTGGAGAAACACGCCACATCAA
AATTGAGTTTTCAGAGGAACCAACCGCAAACCCTGCTATCTGGAAGGCGA
CTGGATCGACACTGGGTGTGAAGGGGCTATCGGAGGTGAACGAAGAATGG
CGGGCTGTTGCCTTGGCCCCCGACCATGCCGACGGGGACACTCTCCTCAC
CTACTACTGCGGAACCTCTATGGGGATTGGGTACGAGGGCATGATGCTGT
TCTCTCGTTCCCAGACCCTTTCAAGTGGTGCCTACCATGCGGCCAAGACA
GCTGCGCTGGCGCACGGGTACGACTTGGACAAATTCTGTTCCCCGGACCA
GGCCCACTGCTCCAAACGTTGAATGAAAGACTTCAAAATGGTGTGCCCTG
AAAATATGTTTCCCCTCGCCTTATCTCTGCTTGCCGTAACATTTTTGCCA
GTCGTGTTTGGCCAGCAGATTGACTTCGGATGTGTTCTAAAACACTGTAG
TAAAGAGACGATCGTCTGTGTCGCCAACACGACCTGCCGTGATGCCCTCA
CCTGCCTTGGTGGCTGCGGTAGCGGTAGCAACATGACCTGCCCCGTGGAC
TGTCTCTTCTCCTATGGGTACGAAGACGAGCAGTTTCTCAAGTTATTATC
CTGTACGACTGTCCAAAACAAGTGTATGTCAAATGTGCCATCAACCTTCA
ACTGTACCAAGCCACAGAAACTGGCACTGAATTTTACTTTTGATATGCTG
AAAGGACGGTGGTATGGCGTAAGAGGCAGGAACCCGCCTCAGGACTGCTA
CGGCTGTTACTCTTACCTCTACGTACCGGACCCAACCCGACCAAAGGGTG
ATTATGTCATGACAAACACCTTCGATTTCAAGACGCTTACTGGAGAAACA
CGCCACATCAAAATTGAGTTTTCAGAGGAACCAACCGCAAACCCTGCTAT
CTGGAAGGCGACTGGATCGACACTGGGTGTGAAGGGGCTATCGGAGGTGA
ACGAAGAATGGCGGGCTGTTGCCTTGGCCCCCGACCATGCCGACGGGGAC
ACTCTCCTCACCTACTACTGCGGAACCTCTATGGGGATTGGGTACGAGGG
CATGATGCTGTTCTCTCGTTCCCAGACCCTTTCAAGTGGTGCCTACCATG
CGGCCAAGACAGCTGCGCTGGCGCACGGGTACGACTTGGACAAATTCTGT
TCCCCGGACCAGGCCCACTGCTCCAAACGTTGAATGAAAGACTTCAAAAT
GGTGTGCCCTGAAAATATGTTTCCCCTCGCCTTATCTCTGCTTGCCGTAA
CATTTTTGCCAGTCGTGTTTGGCCAGCAGATTGACTTCGGATGTGTTCTA
AAACACTGTAGTAAAGAGACGATCGTCTGTGTCGCCAACACGACCTGCCG
TGATGCCCTCACCTGCCTTGGTGGCTGCGGTAGCGGTAGCAACATGACCT
GCCCCGTGGACTGTCTCTTCTCCTATGGGTACGAAGACGAGCAGTTTCTC
AAGTTATTATCCTGTACGACTGTCCAAAACAAGTGTATGTCAAATGTGCC
ATCAACCTTCAACTGTACCAAGCCACAGAAACTGGCACTGAATTTTACTT
TTGATATGCTGAAAGGACGGTGGTATGGCGTAAGAGGCAGGAACCCGCCT
CAGGACTGCTACGGCTGTTACTCTTACCTCTACGTACCGGACCCAACCCG
ACCAAAGGGTGATTATGTCATGACAAACACCTTCGATTTCAAGACGCTTA
CTGGAGAAACACGCCACATCAAAATTGAGTTTTCAGAGGAACCAACCGCA
AACCCTGCTATCTGGAAGGCGACTGGATCGACACTGGGTGTGAAGGGGCT
ATCGGAGGTGAACGAAGAATGGCGGGCTGTTGCCTTGGCCCCCGACCATG
CCGACGGGGACACTCTCCTCACCTACTACTGCGGAACCTCTATGGGGATT
GGGTACGAGGGCATGATGCTGTTCTCTCGTTCCCAGACCCTTTCAAGTGG
TGCCTACCATGCGGCCAAGACAGCTGCGCTGGCGCACGGGTACGACTTGG
ACAAATTCTGTTCCCCGGACCAGGCCCACTGCTCCAAACGTTGAATGAAA
GACTTCAAAATGGTGTGCCCTGAAAATATGTTTCCCCTCGCCTTATCTCT
GCTTGCCGTAACATTTTTGCCAGTCGTGTTTGGCCAGCAGATTGACTTCG
GATGTGTTCTAAAACACTGTAGTAAAGAGACGATCGTCTGTGTCGCCAAC
ACGACCTGCCGTGATGCCCTCACCTGCCTTGGTGGCTGCGGTAGCGGTAG
CAACATGACCTGCCCCGTGGACTGTCTCTTCTCCTATGGGTACGAAGACG
AGCAGTTTCTCAAGTTATTATCCTGTACGACTGTCCAAAACAAGTGTATG
TCAAATGTGCCATCAACCTTCAACTGTACCAAGCCACAGAAACTGGCACT
GAATTTTACTTTTGATATGCTGAAAGGACGGTGGTATGGCGTAAGAGGCA
GGAACCCGCCTCAGGACTGCTACGGCTGTTACTCTTACCTCTACGTACCG
GACCCAACCCGACCAAAGGGTGATTATGTCATGACAAACACCTTCGATTT
CAAGACGCTTACTGGAGAAACACGCCACATCAAAATTGAGTTTTCAGAGG
AACCAACCGCAAACCCTGCTATCTGGAAGGCGACTGGATCGACACTGGGT
GTGAAGGGGCTATCGGAGGTGAACGAAGAATGGCGGGCTGTTGCCTTGGC
CCCCGACCATGCCGACGGGGACACTCTCCTCACCTACTACTGCGGAACCT
CTATGGGGATTGGGTACGAGGGCATGATGCTGTTCTCTCGTTCCCAGACC
CTTTCAAGTGGTGCCTACCATGCGGCCAAGACAGCTGCGCTGGCGCACGG
GTACGACTTGGACAAATTCTGTTCCCCGGACCAGGCCCACTGCTCCAAAC
GTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000006 | genome | Sc0000006:4285439..4289861 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96519_cuf5 |
| Biotype | protein_coding |
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