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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96518_cuf2 >transcript:BL96518_cuf2-protein ID=transcript:BL96518_cuf2-protein|Name=transcript:BL96518_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=243bp
MDGTCPLQVQVLQAIQCRLERIKRFIKTQSQICLFSSSLLIVYEGEPENS
TEKSSPNSAENSTEYSTEHSLTGTHCSLHSVTIGSDDISYNQMHRLSNSA
VSHTKGDINGADVSRVSISDLRLRQECHSQNAFGSAQEVAKTRRANGPHT
HVSGQGAKGKSGLTEQAVTGHSGSPREMDSDWLPPVEDGLSCPIRDSKTD
SMAEAKIDVRMIDFAHVFPSDHIDENYLYGIKNLISYLGKIGT Run BLAST on NCBI mRNA from alignment at Sc0000006:4278223..4284427+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96518_cuf2 ID=transcript:BL96518_cuf2|Name=transcript:BL96518_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=6205bp|location=Sequence derived from alignment at Sc0000006:4278223..4284427+ (Branchiostoma lanceolatum)
TGCAAAAATTGTTGTTTTGGTCCTGTTCCAGACGATCGGGAATGAGACGT
GTATCGTGGTATGGCTGAAAGCAGTGAGAGTCCCTGTAAAAATCGACTTG
ACATCGGGAAGACGAAGAGAACTCCGGAGAAAAGCGGAGCACGAGAAGGG
GTGTGCACCCCTCCCCTCCCGCGCCGCTGCCGCCCTCTCGCGCATCAAGT
CGCCGGGCACCGGTATGGGCAGGGGAAAACCAAGAAAGGTCAGGCTTTAA
CCAACAAAACTGGCAAGGAAGTCTTGTTCCTAGATAAGTCGATTTATGAA
CGACAAACAAGCAACCACGTACACTGAGTACCGTATAGCCGTGGCGACTC
TTTAATCAGTCTGCCGGGGTATATTTTGTTGTATGTCTAAAGACTCTTTT
ACATTACCCTCACAAGGGTAATGTAAAAGAGTCTTTAGACATACAGCAAA
ATATACCCGATTAAAGAGTCGCCACGGCTAAGTACCGTACAGTAGGTTAC
GTTACAAGGGAGCGGTCTAAACTGGATGTAATGCATCCTACCTGACTGAA
GACTCTACTCTACTCTACTCTACTCTACGAGTAGAGTAGAGGTAGGATGT
TCTTCACAAGGGTGCACTAGTTTCCGGCTTCTATGTACGTGTGTGTGTGT
GTTTGTGCGAATCCAAATATACACAATATTTTTTTGTCGCAACATATTCA
TGCCTATCCTCAGTACTGCTGGTTTGGAAGTGTCGCAAAGCGCACCCGGG
TCTGAGCACAACTGGATTAAAGAGTTGCATCGTCCTTTCTGATGGGCATG
TAAAGCCGGTGGACCTGTGTATGAGCTCCTTGGTATGAGGGAGCTTATGG
CATCAAACCTCTGCACTTAAAACAACCCAACACATTTATTGAGAAGAGTA
GCGGTGACCCAGTCACCCGACCAATCAAACCACGTGAATCGCAAAGTGAG
ATGGTGGAAGGTGTCAGCTTTCCAAAGATGTTTTCAGATTGACCATTTTG
GCACTTTGGAAGTGATTGAAAGCGACCGCGATTTAACCTTTAGAGAAAAG
TAGTAGAAACTATTTTTTTCTAAACGTTAAATCGCGGCCGCTTTCAATCA
CTTCCAAAGTGCGAAAATTGTCAATCTGAAAATACTTTTGGAAAGCTGAC
ACCTTCCACCATCTCACTGGCGAGTTTGTTTTGTCAGATGTAGTCGTTAA
CGCAACTTAGAAAGCGATTTGTCGGAAAATGGCTGATACGAATCTGAGTT
TCAATGCGGTTTGATTGGTCGGGGTGCCAGTGTGCTTGGCTGAATATGTG
AGTCGTAGCGAAGCCGCATGGCACTACATGCACTAGCTAAATCATTATGT
AGAGTTAAGTAGAGTAGAGTTGCTTCAGCCAGGTAGGAACTCTGGTTCCA
GTTAAGGCCGCTCTTCGATTCAGCTCACTGTCATCTCTGGTTTCTGGGGA
TGGTCCAGATCTCTGTAGTCGTACATTACTTGGTGCTGTTTGAATTTCCT
TCTCTCCGAAAGGAGGAGGAACACCCGCCTCACCTTTTTCTATATCATAT
CAATATAAACGCAGACAGTCTTCTCAAACCAGCTCAGGGGCGCACCCGGG
GTAGTCACCATCTTAAATTCCAAACTCTCAACGCTCGGACAGACACATAC
AAATACTCGTTCTTCCCCCGCGCCATCCCATAGTGGAACGCCCTGCCTGG
CACGGTTGTATCGGCTCCCACCGTTGAGTCATACCGTGCCAGGCTGGAGG
CCTGCCCGCCTTAGCCTGGGACCTCCCCCCCCCCCTACTTTGCCCCTCGC
GGGGTTATCTGGGGGGTAACGATGATGATGATGATGATATGACAGTCCAA
TCTCTTCTTAATTATGCTTCGTCATTAGCCTGATGTCACCAGCTTCACCT
CTACTTTTGTGTATCTCCAGGCATGTTACAACATGAAGACGGGACCCTAC
TGAAACCCCTCCAGCCGCCGCCACGTGGGCAGAAGGAACTCGGGTTCTAC
CAGACAATTTTTGACGAGGACACGAAGAATCAGGACCTTCTAACCTTAAG
ACAGTTCATGCCGAAGTACCTGGGAAAGTTTGTTCCTGAGGATGACCCGT
CTCGTATCCTTTGTTTGCTTTGGTATTGAAAAAAGGGAAAGGTAGTCCCA
TAGCCTTTTGAGGCCGAAGGGACAATGGGTCTTGAACCTTGTGTCTTGAA
CCTTGAACTTGGACATCTAGCGATGCCAACGTGAGGGGGACAATGGGTTC
TTCTTCTCCACTCAGCGCTGTTCTCCAACAGTGAGCGAACTTCTGAAGTT
CAACTGTTTGTGTCTAGGACACAGTATTATTGGAAGGCGGAGCCCAGCCC
TCTCCTTCCACCGCCTATCACCTCCCCAACTGAAGTCAGGTACCCATTTT
TACACCTGGATGGAGTGAGGAATGTCCTCTCCCACAGACACAACGACTAG
CTAGGAATAAAACCCATGGCTTGTGTTTGCTAGCCCAGCCATTCGGCCAT
TGGATGCCACAATTGCTTCGCTTTGATATGTATGTATTATATCACATATA
CATGAAAACCTTTTCAGTATTTTTATAAGCCAGTCCATTTTGAAAGAGAG
AAAGAACTGCACTTCCTAGGCATGTTTTAAAATGTTGCGATGTTGTTAAC
CATTCATGGAACATGTAGTTAACCTTGACCTTCCCCAGAGGTTTTTATCA
AGCTTGAAGACATCACCCAAAAGTTCCACCAGCCTTGCATTCTGGATGTC
AAGGTGAATGTTATTTCATCCTTCAATTATATGTTGAAATGCAATTTATG
GAATATATTTGCTCATTTTGTAGTTGCTTTGCACGGCCTTCAGTATGTTA
GAAAACTTTTTTTAATTTAAAGTAATGGACAAAAATTGATATATAATGAC
TATATAATGTCCTTGATATAATCAAATCAACATGGCCTAAGTACCAGGAA
AAGAGGCCGTCCTCAAGGCGTCCAGCTATAAAAGAGGGCATCTAATTTCT
TTTTTAGTGCAGGCCTTCCCTAGCTAATAGCTTGTTTGTGTCTATACTCA
GGTTGGAAGACGCTGTTATGATCTCGAGGCCACACCAGACAAGATCGAGC
GAGAGAAGAGGAAGTATCCGCCTATCGACATCGTGGGGTTTCAACTGATG
GGAATGAGGGTAGGTCCAGTAGCGTGTGTATAGTCCGTTGGTTAGCAGTC
CTGCCTCTGGAACTAGAAGCCCCGGGTTCGATCCCGGCTGTGTCGCTCAC
CTGACACGCACGCTACTGGAAAGGGTCGCAGGACGGGACGTTAAGCCGTG
GTCCACTATTCATCGTGCTTGTCGAAAAGAACTAGGGAAAATTTCCCCAG
TACAATGAACTTGTAAATAATGTATATAGCGTCTGTCTTCTCTGTCACGA
CCAGTGGAAGACAAGCTCATCTGTTCATTGAGTTCATTTGAGCTAAACTG
GTTCGAGATCACTTTCCGTTCCTTTCCTGTCTCAACTGTGCAAGAAATTT
CATGCAAATGCATGCTTAAGTTTGTGGTAATTTGATTTCGCCGTACAGAG
AAAATGGAGTGTTCAAGGAAAGACCAAACCATCAAACCATCCATCTAAAA
TGTACAACAAATTACATGTTTGATTTTCAGTTGTAGTTTTTTTCTCTCTT
ACAGATCTATAAGAGGAAAACAGGTGAAGTGGTGTACTACGACAAAAAGT
ATGGGCGGAGTCTTGATGAACACCACGTCGGCATGGGTAAGAACCTTGTT
TTATCAAGTCATCAATAGACCAATTTGAAGGACACAAACTGATTTTGTCA
TAGGGGGATTTTATACACAAACTGTCTATGTCATCTCGCACAGTTATAAA
TTCGTTGCAAATGTGAATCTGAATGTAGAATGTAAATTTTGCATATTTGT
AGTTTTTGTAGTTTTTTGAACGGGACGTTAAGCCATGGTCCACTGTTCAT
TGTGCTTGTCAAAAAGAGCTAGAGGAATTTCCCCGGTACAATGAACCTGT
AAATACTGTACATAGCGTCTGTCTTCTCTGTCACGACCAGTGGAAGATTA
GCTCTTCAACTAAAACTAGATCGAGATCACTTTCCTTTTTTTTTCTAAGT
TCGAGGTAAAGACGTCACCTCTAAACCAGGAACATAAAACCACCGCAATC
ATTTCCGTTTTTACAATAGTATTTGTTTCTAACCACAATCGTACCATTTC
TCTCGTCCAACAGGTCTGACTAAATACCTGACTATGGACGGTACCTGCCC
GCTGCAAGTCCAAGTGTTACAGGCCATCCAGTGTCGCCTGGAGAGAATCA
AACGGTTCATCAAAACGCAGTCCCAGATCTGCCTCTTCTCAAGCTCTCTC
CTCATCGTTTACGAAGGGGAGCCGGAGAACTCCACGGAGAAATCCTCACC
CAACTCCGCGGAGAACAGTACGGAGTACTCTACAGAACACAGCCTAACAG
GGACCCACTGTTCGTTGCACTCAGTGACCATAGGAAGTGACGACATATCT
TACAATCAAATGCACCGATTGTCTAATTCCGCAGTATCACATACCAAAGG
AGACATTAACGGTGCAGACGTTTCTAGAGTAAGCATCTCTGACCTGAGAT
TGCGGCAAGAATGCCATTCCCAGAATGCCTTTGGGTCAGCACAGGAGGTA
GCCAAGACAAGAAGGGCAAACGGACCTCATACACACGTGTCAGGTCAAGG
GGCAAAGGGCAAATCAGGGTTAACAGAACAGGCTGTCACAGGCCACTCAG
GTTCACCGAGAGAAATGGATTCTGATTGGTTACCACCAGTAGAGGATGGG
TTATCCTGTCCAATCAGGGATAGCAAGACAGACTCTATGGCTGAGGCTAA
GATAGATGTGCGAATGATCGACTTTGCCCACGTATTTCCTTCTGACCACA
TTGACGAAAACTACCTGTATGGGATAAAGAACTTGATAAGCTATCTAGGA
AAGATAGGTACGTGATCAAGACAAAAATCAATGGACCATTTTACAAAGAG
GAGGAAAGAGCGCTCCGTCCCAGACTGTTCCTTCCCGTGCAGCATCTGTG
GCCGTTCAAGCGTCAAAAGTTGGTCTTTACTCTCATATGAGGACCCACCT
CGGCACTACTCATCTGTCGAACCAACAGGACAATCCATCACTTTACAAAG
AAAAGTTACATAATGTTCTTCTCAGCCTATATTGTTTTCATGTAAAATAG
GTAGGTAATCAAGACAAAGCAATGGACTCTTTTACAAAGAAAAGTTACGT
AAATTTGTTCTCAGCCAATATTGTTTTCATGTAAAATAGGTAGGTGAGAC
AAAACAATGGACTATTACATAATTTTTGAGTATCACCTAAATTGGATGAT
AATCAAAGAACTGGTAAACTGCATCAAGGCATAACACAGCAGTTTTATCT
TTTGGTTTGTACAAACTTCATAAGACTAGACTGATTGGATTGCCCTACGA
ACACTTTGGACATACCTCTTCTTGTATTGATAAATGTTGTTGGTGGAAAT
CCCAATCTCGAGAATTTGTACATGCCTTATTGCCTTTAAAATGGGTAATG
AAGGAAATAAACACGAAAACGTGTTAACCATAGCGTACGGTCTCGGTTAT
ACTGTGGTAGAATCCCTAAGAATATATCAAATCAATGTTTGAAAAATGTA
GATGTTTTGACCTCTCAAATGATATTCATGGGAAAGTGTCTATTTTAGCA
AGAAGCCCTATAAAGGGCCAGCTATTACAAATGGATTATAATGGTCTATT
TTGAATGTTGTCCTAAACATTTGTAACAGTAGTAGTAGTGGTGTAAGCTA
TATTTATGATGTGTGGTCTAACCTTAGTCTTGTTTCCAGAGATGATGATT
AGGTGAATCAAGTTTACCCAACAAAGACTAGCGTCCACCAGGCCTTCCTA
CAGGAGTGAGGAATCGTAAAATTTGTCAAAAAAGGAATAATTGGCCAGGA
GAGTCAGTCCAGGGGAAGGTTAATATTTCTCCCTCGAATGAAATGAAAAC
CTGTGGTGGCTAAACTTCCCTGTTAAATATTCTCACTACAGCTGGCGTAG
TTAGTCTGGGAGAGACTACACTAGTGTGCTAGCTGAAGCTGGCTCCTGTA
GTATAGAGGCACTCATTATGCGCAGCCAACTACGATGGACTGGTCATTGT
GTCCGGATGTCAGACAATCGGCTCCCCAAACAGACCCTGGATCAAGGGAC
ACGGC Coding sequence (CDS) from alignment at Sc0000006:4278223..4284427+ >transcript:BL96518_cuf2 ID=transcript:BL96518_cuf2|Name=transcript:BL96518_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=732bp|location=Sequence derived from alignment at Sc0000006:4278223..4284427+ (Branchiostoma lanceolatum)
ATGGACGGTACCTGCCCGCTGCAAGTCCAAGTGTTACAGGCCATCCAGTG
TCGCCTGGAGAGAATCAAACGGTTCATCAAAACGCAGTCCCAGATCTGCC
TCTTCTCAAGCTCTCTCCTCATCGTTTACGAAGGGGAGCCGGAGAACTCC
ACGGAGAAATCCTCACCCAACTCCGCGGAGAACAGTACGGAGTACTCTAC
AGAACACAGCCTAACAGGGACCCACTGTTCGTTGCACTCAGTGACCATAG
GAAGTGACGACATATCTTACAATCAAATGCACCGATTGTCTAATTCCGCA
GTATCACATACCAAAGGAGACATTAACGGTGCAGACGTTTCTAGAGTAAG
CATCTCTGACCTGAGATTGCGGCAAGAATGCCATTCCCAGAATGCCTTTG
GGTCAGCACAGGAGGTAGCCAAGACAAGAAGGGCAAACGGACCTCATACA
CACGTGTCAGGTCAAGGGGCAAAGGGCAAATCAGGGTTAACAGAACAGGC
TGTCACAGGCCACTCAGGTTCACCGAGAGAAATGGATTCTGATTGGTTAC
CACCAGTAGAGGATGGGTTATCCTGTCCAATCAGGGATAGCAAGACAGAC
TCTATGGCTGAGGCTAAGATAGATGTGCGAATGATCGACTTTGCCCACGT
ATTTCCTTCTGACCACATTGACGAAAACTACCTGTATGGGATAAAGAACT
TGATAAGCTATCTAGGAAAGATAGGTACGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000006 | genome | Sc0000006:4278223..4284427 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96518_cuf2 |
| Biotype | protein_coding |
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