|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96510_cuf3 >transcript:BL96510_cuf3-protein ID=transcript:BL96510_cuf3-protein|Name=transcript:BL96510_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=240bp
MSSADEEWVLYYWGTPPGGKPFCGRGEFVRLIFEETGVKFREVGDHEVLK
NMFFSKEMEKQVGFPSFAPPMIQRGKFRLSQTPVICSYLGKQFGLWPESE
EDQWHAQQLNNTIHDFIAEGRLAFHGRNNVESYYTQKEETQPYIDRFVAT
RLSRWLTCLETALKANKGGQGFVIGDKLTYVDLGLLHVLRATEAQFPDAW
ASNDSIPLLKAFKDRLSARPNLAAYFKSDRCRPFEGNSMM Run BLAST on NCBI mRNA from alignment at Sc0000006:37804..42694+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96510_cuf3 ID=transcript:BL96510_cuf3|Name=transcript:BL96510_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4891bp|location=Sequence derived from alignment at Sc0000006:37804..42694+ (Branchiostoma lanceolatum)
NNAAAAGGTTGGCCGCACCTAGAAGGTCGGCGAAGGAGGTAAGGTTACCA
AGTTGTGCGACAGGCACGCCCCTTTTCCCGTCATGCAACGTTAACTATTC
GGGTGGTATTTGAGGAAGTCGAGGACACAGGGCTTTACTTCTGGGCTAGT
CCACCACCACAATCGTTTAGCGGTGAGTATTTTATGAGAGGACTCGGAGT
GATATAGAACTATATGGGCTAGTTAGAACCGACGGTTGGACTTAGCTATG
CAAGGATCTAGGTGTTACGGGACGTTTTCGTTGAAACAATACGCCTGCCA
AACTCAGGGCCACAGCCTTGGGCGGTACCTGTATATCACAGTGGTTCTCG
ATTGACTTAAATTGTAAATACAAGAATACAGCTAGAGTAGCCTTTTCATG
TATATGCATACATAGCCTTCCTCGCTGGTAACATGTTCTATGTGTTTGTA
CTGTGCACAGTGGGAATGATTTTGAATCGTAATAGTTACATGGTAGTTAG
GATACAGTGACAAGGGTCATTGTTTGGGGCGGGCAAGCTAATTGTTGCAA
GTCATTGCGATCATTGTGACTTGCAATTTGATCATAGCAATGCTCTTGCA
TAGTTCTGCCTTGAAGCTAGCGAGCAGACTTTAAATCTGAGGAACTGAAG
TTATGTAAAAGACCGTTATCCATACACAAGCACAGAAACAACGTTGCGAC
CGCAGTGGACACTTTTCAACTTATTTTCCCACAGGTCAAATCCAGTGTAG
CCATGTCATCCGCCGACGAGGAATGGGTCCTGTACTACTGGGGAACTCCG
CCAGGGGGAAAACCATTTTGTGGAAGAGGGGAGTTCGTCAGGCTCATCTT
TGAGGAGACAGGCGTCAAGTTTAGAGAGGTCGGAGACCATGAGGTCCTGA
AGAATATGTTTTTCTCAAAGGAAATGGAAAAACAAGTAGGATTCCCCTCC
TTTGCCCCGCCCATGATTCAAAGAGGTCAGAAAAAGACAATATTCTTTAC
CAAATGTTTATTTTCTGTAAATCTTCTTTCAACAATCCAATTACAATAAA
AATGCACGAGGGGATAACTACCCAGAAATAACCATAGTATTGCAGCACGT
GCCCTGGCGGCGTTTTGCATTTCATATTGATGATTATTCATGATGTTTCT
TAGATATCATATTTGAAAATCTCCTAAAATCACTGACTAAATCGCTATGT
ATCACTAGAAACAGCAATCATTATTTTTTATGTACCCATTGAAAAAAGTG
TAATTCATTAAAAAAATTCATTTCAGGTGCCCTCTTGTTTTTCATATTTG
TTTTCGCTCATATTTGCCACGAATGCCTTTTTCTCTTTCAATAACGATGT
TCCCTCTCGAGTTCATCCGTATATTTGTTTGTTTACTAAAGCCCTTATCT
CACTGGGCGTGCGGCACGTTTACGAGCTGCAATCGGGCGATTTGACAAAG
CGCTCACCAAATTTTATTGATAAAAACAACAATATTTTTACGCTTTGTGT
GTTTTGTTGTCTTTTTAGTCATACTTTTACGCTTTGCATTGTATTCCAAG
GGTAACACAAATCAGTTTAGGACGCGGCGCGCGACGCCGCCAACGTGCCG
CGGGCTCTGTGAGATAGGGGTTTAATCGTGTCATCTCCGATCTTCTTGTT
TCCGGACGGCAGGAAAGTTCCGGCTGTCCCAGACGCCTGTCATCTGCAGT
TACCTGGGGAAACAGTTCGGGCTGTGGCCGGAGTCTGAGGAGGACCAGTG
GCACGCGCAGCAGCTAAACAATACCATTCACGACTTCATAGCGGAAGGTT
ACTTCACTTTGCTTGATTTAGCCCCCCCCCCATAGTTTCAATGCTGTATA
TACACTTGTTTATGTTTGTTTATATGTGTGTTATGCCTAACTTGGAGCAT
TATAAGGCGCATGTCCGGACAGATTTATTTAATCCACTCACATCGGGAAG
TACCCCTACTCTTTTTCGATAAGTTGCGGGGTGTGACTCTTCTCAAACGT
TGGACCTATAGTTAACGTCCGAGGAACGTCCCTAACCGAAGGTAGGTACT
CCTTTTTACCTGCAGTGAGCGAAGTAATATGAACATATATAGCGTTCAAG
GTATAGCAGGAATCCAACCCGTGATCTCTTGGTCTCTTCCATGTTGCAGG
ACGCCTGGCTTTCCACGGTCGGAACAATGTCGAGTCTTACTACACCCAGA
AGGAGGAGACCCAGCCGTACATCGACAGGTTCGTGGCGACCCGCCTGTCC
CGCTGGCTGACGTGTCTAGAGACTGCTCTGAAAGCCAACAAAGGCGGACA
AGGGTAAGCTGTCATGTCAGTCTATTTCTGTCGATCGTCAGCATCGCACT
TTGCTTATCATGGTACGTTCTCCCTTAAATCGGGTGTTTCACTGGGCTGC
GCCTATAATTGCACCAAATTAAATCGGCGCCAATCAGCGTCAATTTTGCG
ATTTTGGCAAAATGGCTTAAATGGGCGCAAAATGGCGCAATCACTGCGAA
TCTCTTTGATGAAACTTAATCATTATACAATGGTTTTTAAGTCAGTGCCA
ACGTTAACACTGCGATTTCCGATAAAGTTATATCTTGTATCTGACCTGGA
GCCAAAACTGAGGATGTGACATTCCGGGCACGGCCATTTTGTTGGTAGAG
GTCACGCCTACGTGTGACCGTAAGGGAAAATTGGCGAAAATTCGCAAAGT
TGGCGAAAATTCGCAAAAGATAGGCGCAGTTCAGTGAGATACCAGCTTAA
GGCTCGTTCAACAAGTTAGTATAAGGTTTTAAGTTTAAAAATCTGGCACG
GCATTTGGAGAACAAAGTGGCCATTCTCGCGTCAGCTGTTGCGTCCGCTC
TACAAGTGGTTATTTCGAAGAATATTTACGATTAGAAATTCCACCAGGGT
ACTTAATCCCGCCACCCTAAAAAGATACGTCCAAACAGATCTCCAACCCA
ACGTTCCCCAGTAAAATGCACTCGTAGCCTGTACATCTTATAACTGTGCA
TACATGGGGAGTGCTGCACTAGAGATCTCTGAAACCCACTGGTTTTCAAA
GTGGCGGATTTATGTAACCCGGCGGATTAATGTTAATGGAGGTCTCATCC
CCACCTTACCGAATTGCACTTAACGGAGTGCATTGTTAGATATCTAACCT
GTTGCGTTCTATATGCCCTGTCCTTGGTGAAGGTTCGTTATAGGTGACAA
GCTGACATATGTGGACCTGGGCCTGCTGCATGTTCTGCGGGCTACCGAGG
CACAGTTCCCCGACGCCTGGGCCTCCAACGACTCCATCCCCCTCCTCAAG
GCCTTCAAGGACCGCCTGTCTGCCCGACCCAACCTGGCGGCATACTTCAA
GTCAGACAGGTGCAGGCCATTTGAAGGGAACAGCATGATGTGAAGACGAT
TCTTCAAAAGCGCCCCCTTTCGATCTCTACACGATTTGAAACATTCGTCA
ACTGGTGATATGTTATATTACGTCACAGCTATTTTCCCAAGTTCTAGGAT
GTGCTACTTCGGATTTTCTTGAATGCAAGACAGATGTGGTGTGTTTTCAT
GTAAGATACAGTCGCTTCTGTTTGTCGTCAACGTTACTTTGCCGTTGTAG
TAAAAAAAATGATATAGTTTTTATATCGTCCAATCGATAGCCGCAGTGGC
TGCCATTGAAGTCAATTATAGAAGTGATGATGATAATAATAGATAACAGT
GGCCCGTCAGTAGTGTCATTATCTGTACTTTATTACGACTTTATATCTAT
ATTCCTATACTTAGCCCTGTAGGGCATGAATGTACAATAAAGGTCATCGG
TTATTTGATAACGTTATCCTTTATGATGTCTGCAACTAAAAAGCCCCTGC
AGTTCCAGTGAAAGTTGCTAGAGGGCCCCAACTTGTGTCACATTTTCACG
AGTACAATGAATATCTAACACCCTGAAATTATGACCAAAGCATGTACAGA
ACACGAGATATTAAAATCTGAAATCCTTCTGCAGTACCAAGGAACGTCAC
CAGGAGGCCCAAAATCTAATCGTTGTTTCATATTTTCATTTATCACCTAC
CAACATACCAAATATCATACGGATCCATCCCGACTTCTCGAGTTATTCTA
GCTTCGTGATAGCCATGACATTTTGTCTCAACTGAAATTCTCTCCTTTAG
ATTTAGAGGTTCTGAAATGCCTCTGCTTTACTTAAGTTTCCAAAAAGAAC
TAGAATGGCAACATTTTCTGGAAAATGCAGAATATTCCCCTTCCATTACC
TACACCTCAAATATGACATCCTTAGCATTGACTGTAAGGATATTGCCAAG
TTTCTGCATACATTATGCAAAGGAGGTCGGCATTAGCATATAGCATCTCA
AATATGACATCCGTTATGATCCGTAGCTTTTATGGTAAGGGATATGCATA
AATTATGCATAAATTATGCATAATGCACTCATTAGCATAATGTATGGCCA
GGTTTTCTGGCCTTTCCTAAAGGTACCTGCATCTCAAATATGACATCCGT
AGCCTTTACAGTAAGCTAAATACAAGTTTATGCATAAATTATGCAAATGA
GGTCTGCATTAGCATAATTTTTATACAGATGTGTTCACCTCTCCTAAAGG
TACCTACATCTGAGATATGACATCCGTAGCATTTACGGTAAGGGATATGC
ATAAATTATGCAAACGAGGCCCTCATTAGCATAATTTATGGCCAGGTTTT
GTGACCCTTCGTAATGGTACCTACATCTCAAATATGACATCTGTAGCTTT
TACGGTAAGGGAAATACAAGTTTCTGCATAAATTATGCAAATGAGGTCCT
CATTAGCATAATTTATTGTCAGGTGTATTCACCTTTCCTAAAGGTACCTA
CATCTCAAATATGACATCTGTAGCTTTTACGGTAAAGGAAA Coding sequence (CDS) from alignment at Sc0000006:37804..42694+ >transcript:BL96510_cuf3 ID=transcript:BL96510_cuf3|Name=transcript:BL96510_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2892bp|location=Sequence derived from alignment at Sc0000006:37804..42694+ (Branchiostoma lanceolatum)
ATGTCATCCGCCGACGAGGAATGGGTCCTGTACTACTGGGGAACTCCGCC
AGGGGGAAAACCATTTTGTGGAAGAGGGGAGTTCGTCAGGCTCATCTTTG
AGGAGACAGGCGTCAAGTTTAGAGAGGTCGGAGACCATGAGGTCCTGAAG
AATATGTTTTTCTCAAAGGAAATGGAAAAACAAGTAGGATTCCCCTCCTT
TGCCCCGCCCATGATTCAAAGAGGAAAGTTCCGGCTGTCCCAGACGCCTG
TCATCTGCAGTTACCTGGGGAAACAGTTCGGGCTGTGGCCGGAGTCTGAG
GAGGACCAGTGGCACGCGCAGCAGCTAAACAATACCATTCACGACTTCAT
AGCGGAAGGACGCCTGGCTTTCCACGGTCGGAACAATGTCGAGTCTTACT
ACACCCAGAAGGAGGAGACCCAGCCGTACATCGACAGGTTCGTGGCGACC
CGCCTGTCCCGCTGGCTGACGTGTCTAGAGACTGCTCTGAAAGCCAACAA
AGGCGGACAAGGGTTCGTTATAGGTGACAAGCTGACATATGTGGACCTGG
GCCTGCTGCATGTTCTGCGGGCTACCGAGGCACAGTTCCCCGACGCCTGG
GCCTCCAACGACTCCATCCCCCTCCTCAAGGCCTTCAAGGACCGCCTGTC
TGCCCGACCCAACCTGGCGGCATACTTCAAGTCAGACAGGTGCAGGCCAT
TTGAAGGGAACAGCATGATGTGAATGTCATCCGCCGACGAGGAATGGGTC
CTGTACTACTGGGGAACTCCGCCAGGGGGAAAACCATTTTGTGGAAGAGG
GGAGTTCGTCAGGCTCATCTTTGAGGAGACAGGCGTCAAGTTTAGAGAGG
TCGGAGACCATGAGGTCCTGAAGAATATGTTTTTCTCAAAGGAAATGGAA
AAACAAGTAGGATTCCCCTCCTTTGCCCCGCCCATGATTCAAAGAGGAAA
GTTCCGGCTGTCCCAGACGCCTGTCATCTGCAGTTACCTGGGGAAACAGT
TCGGGCTGTGGCCGGAGTCTGAGGAGGACCAGTGGCACGCGCAGCAGCTA
AACAATACCATTCACGACTTCATAGCGGAAGGACGCCTGGCTTTCCACGG
TCGGAACAATGTCGAGTCTTACTACACCCAGAAGGAGGAGACCCAGCCGT
ACATCGACAGGTTCGTGGCGACCCGCCTGTCCCGCTGGCTGACGTGTCTA
GAGACTGCTCTGAAAGCCAACAAAGGCGGACAAGGGTTCGTTATAGGTGA
CAAGCTGACATATGTGGACCTGGGCCTGCTGCATGTTCTGCGGGCTACCG
AGGCACAGTTCCCCGACGCCTGGGCCTCCAACGACTCCATCCCCCTCCTC
AAGGCCTTCAAGGACCGCCTGTCTGCCCGACCCAACCTGGCGGCATACTT
CAAGTCAGACAGGTGCAGGCCATTTGAAGGGAACAGCATGATGTGAATGT
CATCCGCCGACGAGGAATGGGTCCTGTACTACTGGGGAACTCCGCCAGGG
GGAAAACCATTTTGTGGAAGAGGGGAGTTCGTCAGGCTCATCTTTGAGGA
GACAGGCGTCAAGTTTAGAGAGGTCGGAGACCATGAGGTCCTGAAGAATA
TGTTTTTCTCAAAGGAAATGGAAAAACAAGTAGGATTCCCCTCCTTTGCC
CCGCCCATGATTCAAAGAGGAAAGTTCCGGCTGTCCCAGACGCCTGTCAT
CTGCAGTTACCTGGGGAAACAGTTCGGGCTGTGGCCGGAGTCTGAGGAGG
ACCAGTGGCACGCGCAGCAGCTAAACAATACCATTCACGACTTCATAGCG
GAAGGACGCCTGGCTTTCCACGGTCGGAACAATGTCGAGTCTTACTACAC
CCAGAAGGAGGAGACCCAGCCGTACATCGACAGGTTCGTGGCGACCCGCC
TGTCCCGCTGGCTGACGTGTCTAGAGACTGCTCTGAAAGCCAACAAAGGC
GGACAAGGGTTCGTTATAGGTGACAAGCTGACATATGTGGACCTGGGCCT
GCTGCATGTTCTGCGGGCTACCGAGGCACAGTTCCCCGACGCCTGGGCCT
CCAACGACTCCATCCCCCTCCTCAAGGCCTTCAAGGACCGCCTGTCTGCC
CGACCCAACCTGGCGGCATACTTCAAGTCAGACAGGTGCAGGCCATTTGA
AGGGAACAGCATGATGTGAATGTCATCCGCCGACGAGGAATGGGTCCTGT
ACTACTGGGGAACTCCGCCAGGGGGAAAACCATTTTGTGGAAGAGGGGAG
TTCGTCAGGCTCATCTTTGAGGAGACAGGCGTCAAGTTTAGAGAGGTCGG
AGACCATGAGGTCCTGAAGAATATGTTTTTCTCAAAGGAAATGGAAAAAC
AAGTAGGATTCCCCTCCTTTGCCCCGCCCATGATTCAAAGAGGAAAGTTC
CGGCTGTCCCAGACGCCTGTCATCTGCAGTTACCTGGGGAAACAGTTCGG
GCTGTGGCCGGAGTCTGAGGAGGACCAGTGGCACGCGCAGCAGCTAAACA
ATACCATTCACGACTTCATAGCGGAAGGACGCCTGGCTTTCCACGGTCGG
AACAATGTCGAGTCTTACTACACCCAGAAGGAGGAGACCCAGCCGTACAT
CGACAGGTTCGTGGCGACCCGCCTGTCCCGCTGGCTGACGTGTCTAGAGA
CTGCTCTGAAAGCCAACAAAGGCGGACAAGGGTTCGTTATAGGTGACAAG
CTGACATATGTGGACCTGGGCCTGCTGCATGTTCTGCGGGCTACCGAGGC
ACAGTTCCCCGACGCCTGGGCCTCCAACGACTCCATCCCCCTCCTCAAGG
CCTTCAAGGACCGCCTGTCTGCCCGACCCAACCTGGCGGCATACTTCAAG
TCAGACAGGTGCAGGCCATTTGAAGGGAACAGCATGATGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000006 | genome | Sc0000006:37804..42694 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96510_cuf3 |
| Biotype | protein_coding |
|
