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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96507_cuf9 >transcript:BL96507_cuf9-protein ID=transcript:BL96507_cuf9-protein|Name=transcript:BL96507_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=261bp
QXIQPETQAIMNWTRSIPFSLSAIFHGGAVVANYPWDNTPLGQNGPSIYS RSPDDDIYRHLALTYSENHGTMHQGDICSGDFFEDGISNGADWYPLRGGM QDWVYIHGECLTVTLEVSCCKYPTQDQLGDHWTQNKNSLIELLLQVHRGI KGQVFINGTDVPFSEATVTIGDRDNTFHTTSDGEFWRILVPGQYSVTVSK AGFSSETRTVTVPSNLTFSAVIEDFYLVENGTSSAPKASVPSLTFIITST LICLLKVKTVF Run BLAST on NCBI mRNA from alignment at Sc0000372:67560..74244- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96507_cuf9 ID=transcript:BL96507_cuf9|Name=transcript:BL96507_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=6685bp|location=Sequence derived from alignment at Sc0000372:67560..74244- (Branchiostoma lanceolatum) CAGTNCATCCAGCCTGAAACACAGGCCATCATGAACTGGACCAGGAGTAT
ACCATTCTCCCTGTCTGCCATCTTCCATGGTGGGGCAGTAGTTGCAAACT
ATCCGTGGGACAACACACCATTAGGTGACTGTACAAACTGTTCTTTGCCC
TTGATCTGAAAGGTACATTGTCATATCGGTCCACAAAGAGCAGTTGTGTA
GGTTGGATGTAAGACTTCTATGTTATGAATCCAGGTAAGGTGTACCGGTA
TTGCAGATGATTTCAGTCCCAGTCACACATGGACAATCAGAACCTTTCCA
CAACTTTGCTCCTGACCACTCCCCAACCAAGGTTCGCACTGCTTTGCCAT
TGGAAGTAGCCTGGAAAGTGTCCTATTATAGCTCTATTATGCTGCTCTGA
TTGCATCCAAGAACAATATGACTATCCCAGCTATGATTTTTGGAATTCAT
AGTCGGCTGGAGCAGGCCATTTTTAAAGACAAGTTGGTAACCTAGCTGAC
CAACTCCCAACCACAGATGACCTTGCTCACAACCATGGTCTGAAAACGGT
CAGGAGACCAAAGTCGGCTATGTGTGACAGGGGCTTAAACCTATATTTTT
AGTACTGCGGCCTAGAAGAAACAGTCATGGCCAAGCTTCATATTCTTTGA
CCTCAGTTTGCCAAAGGCATTTCATTCTGACTTGTCAGTCCCAAGCCTCA
GTGAAATTCATTTGTATTTGGCTTAGATGTCTGACAGTGCCTATCGACCT
ACAGGACAGAATGGCCCGTCAATCTACAGCCGTTCTCCTGATGACGACAT
TTACCGACACCTTGCTCTGACGTACTCTGAGAACCACGGTACCATGCACC
AGGGCGACATCTGCTCCGGGGATTTCTTTGAAGATGGCATCTCCAATGGA
GCAGACTGGTATCCACTGAGAGGTATCGTGCCACACCTATATACTCTCAT
AGCACATATGTAGCCTCTACCGGGCCCCGCGGATCGCTGGGAAAATAGTA
GAAATTGGCCAAATAGAATGAATAGTATGCTAAGGGAGTCGGCTACGGAG
AGAGGGTCAAATCTGCCATCCCAGGCCTGTGAATGAAACCCTTAATGGCA
AAACTCCCCTGGCAAATATTCTCCCCATAGCCGGCGTGGTTAGTCTGGTG
GAGACTAGCAGGTATGCAGAACGCAAGCATTTACGGCAGTGTTTGCGTAT
TCAAGGTTAACATTTTGCATATAGGACTAAGGTTTATATAGTTGTGTCCA
AAGATGTATCTTATGCAACAGCTGTTACTCTGATGCAATGTTGACCAAAA
ATGATGGAGACTCACCAGCTATAAAAGGTTTGGATAGCAGGCTATATACG
GTATGTGCATGGCGTTTCGGCGATGTGCTTATTCTCATTTGTTTTGTTAA
AGATATTTAATCTATGCAGAAGTTGTTTAGATTTTCGCTTTTTGTCCATG
AATAGTTTCATTAGGTTGGCAAAATCACTGGATAATAAAGATTTTTGTGC
ACAACCAAAGAGTCAGCACCTAGTTTCAGTGACTGTCTGCCCGGTTTGGG
ACCGCATTCTTCACACTGCAGCAGCGACACCTAGCTGCAGTGCGAAGTAG
AACCANCCAAGAACAATATGACTATCCCAGCTATGATTTTTGGAATTCAT
AGTCGGCTGGAGCAGGCCATTTTTAAAGACAAGTTGGTAACCTAGCTGAC
CAACTCCCAACCACAAATGACCTTGCTCACAACCATGGTCTGAAAACGGT
NTTTGGTCTGAGCTCTTTGGTTGTTTACAAAGAGCTTTGTTGTCTTGTTT
ATGCTTTTTCAATGTGAAGTTCTATACATGTACATGTATATCATTAAGTC
ATCTATAGACATAGTATCTAGTACAATGTATTATTAAGTTGTGTAAAGTA
ATGTAATGTACACTACAGTGGTGTATTTACAAATGTCTGGCATACAATAT
TGAATATTCCTATCGCTGTTTGCGTTGTTAATGCAGGAGGGATGCAGGAC
TGGGTGTACATCCATGGGGAGTGCCTGACAGTCACCCTGGAAGTTTCCTG
CTGCAAATATCCAACTCAGGACCAGCTTGGGGACCACTGGACTCAAAATA
AGAACTCTCTCATAGAACTACTTCTGCAGGTGCATAGAGGTAAGGTGAAG
ACTTTGTTCTTCTGGTTTCACTGTGAGAGATTTCCAATGTATATGCAGTA
TATTGATAGACTACTTATTGTACTACTACTAACAGCATTGCCATACTTAT
TTATTAAACGTAGGAAACAGAAACATGACCAAGCAAGTGTTGTTGTCTGG
GGTGGTAGTATTTTTCATTAACCTACTTTTCAACATGTCCACTTACTTAT
TAGTCTACCAACATAAAGTATCAATTTCATTTGTCCATCCTTGCAGGTAT
AAAGGGCCAAGTTTTCATCAATGGAACAGACGTGCCATTCTCAGAGGCCA
CTGTAACCATAGGGGACAGGGACAACACCTTCCACACTACGTCTGATGGC
GAGTTCTGGAGGATTCTCGTTCCTGGGCAGTACAGTGTGACGGTAGGTTA
TATGGTTAAGTTGTGGCTGAACAAGTCGGTTCACAGTTTAAACTCAGCTC
ATGCGTCAGGTCAAAGGTGAAGTCCACTAACTTGTAAGCAGTTCTACATG
TTTGATACATGTATATTTATGTCTTAGGGGCCTTCCGCTTTGACCAGTGT
GTCACACTGCACATGCAACCATGAACCAGCGTCTTTGCGAATAGACATAA
ATCCCACTTCTGACACCATGTTTTGAGAGTTTTCCTGCCAGCTGCTGTCA
GATCATTTGTGTAAACCTGTGTAAAAAGATAATTTTAAAAACAAACAAAC
CTGTACATATGTTCTCAGGTATCCAAAGCTGGCTTCAGCAGTGAGACTAG
GACAGTGACCGTCCCCAGCAACCTGACTTTCAGTGCGGTGATAGAGGACT
TCTACTTGGTCGAGAACGGCACCAGCTCAGCGCCAAAAGCTTCCGTACCG
TCCCTTACCTTCATCATTACCTCAACACTAATATGCCTGCTGAAAGTGAA
AACTGTCTTTTAATAAAGCCTTGGAGAATTTATATATTTTCATCTTAATG
TAACATGGAAAAACTTTTATATTTTGATATATTTTGATATATTTTTATAA
AGATAACTCATGAAATAAACCCTATTGTGATATGTGCATGCATGTGCATG
GCAGTGACTAACAGAATTCTTAAGTAAAGAAGATACTATATGTATATATT
GTAACATTATATGTAGAGGTAGATAAACATGTACTTATGGATGATTGTAT
CAGGAGGGATGGACCAAGGGAAATTGGGTGCAAATTTTGTCAAAGACAAC
AGGTCAAAACCATCTTTGTTATAATTTTGTATTTCTTTTTAGTTTCACAA
TTTGGAATCCTCTCAGTAGAGTAATGTTACCAGTTAACAGCCAAGTAATT
GGGGCCATCTATTCAAGAAACACATAACAAATATTTATTCTTACTAAAAA
ACACTATATTGTCNGGCGAGTTCTGGAGGATTCTCGTTCCTGGGCAGTAC
AGTGTGACGGTAGGTTATATGGTTAAGTTGTGGCTGAACAAGTCGGTTCA
CAGTTTAAACTCAGCTCATGCGTCAGGTCAAAGGTGAAGTCCACTAACTT
GTAAGCAGTTCTACATGTTTGATACATGTATATTTATGTCTTAGGGGCCT
TCCGCTTTGACCAGTGTGTCACACTGCACATGCAACCATGAACCAGCGTC
TTTGCGAATAGACATAAATCCCACTTCTGACACCATGTTTTGAGAGTTTT
CCTGCCAGCTGCTGTCAGATCATTTGTGTAAACCTGTGTAAAAAGATAAT
TTTAAAAACAAACAAACCTGTACATATGTTCTCAGGTATCCAAAGCTGGC
TTCAGCAGTGAGACTAGGACAGTGACCGTCCCCAGCAACCTGACTTTCAG
TGCGGTGATAGAGGACTTCTACTTGGTCGAGAACGGCACCAGCTCAGCGC
CAAAAGCTTCCGTACCGTCCCTTACCTTCATCATTACCTCAACACTAATA
TGCCTGCTGAAAGTGAAAACTGTCTTTTAATAAAGCCTTGGAGAATTTAT
ATATTTTCATCTTAATGTAACATGGAAAAACTTTTATATTTTGATATATT
TTGATATATTTTTATAAAGATAACTCATGAAATAAACCCTATTGTGATAT
GTGCATGCATGTGCATGGCAGTGACTAACAGAATTCTTAAGTAAAGAAGA
TACTATATGTATATATTGTAACATTATATGTAGAGGTAGATAAACATGTA
CTTATGGATGATTGTATCAGGAGGGATGGACCAAGGGAAATTGGGTGCAA
ATTTTGTCAAAGACAACAGGTCAAAACCATCTTTGTTATAATTTTGTATT
TCTTTTTAGTTTCACAATTTGGAATCCTCTCAGTAGAGTAATGTTACCAG
TTAACAGCCAAGTAATTGGGGCCATCTATTCAAGAAACACATAACAAATA
TTTATTCTTACTAAAAAACACTATATTGTCAATCCCAATTATTTTTGGCA
CTATGGGGACATGTACTCATGAAGTACAAGGCATGTACTAATGAAGTACA
AAATGTAGTGAATAATTTTTTCAGAGGAATTATTGGTCAGTTGAGCCTTT
CTCTTTCTAGCACTCTATCTGATGGACATGTAGATAAAATGTGCCCAATG
TAGCCTACAGACAAACCATTAATAAAGTCAGTAAAGAAATACTCCCAGTT
GGATCCTTAATGGCAAATCAAATTTACCATCAAGTCAATATCACATGATG
TATTATTTATACATTTGTATTTAAGTTTTACAAATTTTTTCTAGAAAATG
AAGTGATGTGAGGTATGAGAATTTTACAAAGTTTAGAATTCTTATCACCA
TGGATGATGAATATTACAAGGATTTAGGTTTTGATGTCATCTGCTTTTAT
AATGCATTTTGTGTGATTAAGGAAAAGGATAAAATGCTTGGTGTGGAATT
CAGCACATTATGTGTGGCGCTTGCAGGTAACTTCTTACAGCTTTCACAAG
GCATGTCTAAGGATCACACATCTCTTTATTGCTCATGGGAACGTATTTTT
ACACACCTTGACGTGTGCCCACAATTAACCAGAAACTGATCCTGCACGTA
GAACTGGTAACTTTACTGTACAATTTTGTTCTATTTTCAAATGACAACAC
CTTACAATCCTAGACGGTCCATCCCTGAAGAAAGGAGTTAATCTATGAAG
AATGGCTCTGCCACAAGATGTAAGATGTGACACTACTTACACCATGTGTT
ATTCTGCCAGATGTTTGTAATGGATTTCCTTTGACTTGTACTGACATTAT
ACATTCTTCTGAAGACCACTGTTGCAATGAGGAGCAGATCTAGTCTGGGT
ACCATCCTTGTAGTTTTCACTCGCTCCAAATGACTTGCTTGCACAATGTG
TGGGCGCATATGGGAACAAGCATAAAGTAAACAGGGTAGTACACAGGCTT
GGGTATATCTGGACTTATGAACCAGATGTAGATGTTGTAATAGACTACTT
GGAAAATATCTTCAGTTGGTCTTTTTACTAAAACTAAATATCTTTAATTG
TGTCACAATGTTCTGACGTAAACTCATTACAAAAGAATTGAGAGAGCATC
AATAATAGACCTGGCATAACAAATCTGTTTATCTGTGAAGAAAGTTTTGT
ATTGTTATATTTTTTTACTATGCAAGGACCAAACATTGACAGCTTCAGTT
TCTGCTATGATCTTGGACAAAGTTTCTGCTGAAGATTGAAAAATAATAAT
TTTATAACCTAAAGCTCAGGAAGTGGCTACATGTACACACATTACGAAGT
ACAGCTTGTAGCATATTTTTTGTGTGCCAAAATTGTGAAACTTCAAAATT
ACATGAAATAAAAGAATGCAAGTACATGTAGAAACTAGCACGGACCCCTG
TTTTCTCTTGATAAACTTTCACCATCCCATCTATATGTTAAAGAGAAGTT
ATAGCAGCATTTTGTCTGCCATTGTGAAGCAAACTTCCCTCTTTTAAAGG
ACCCTTACTACTAAACCTTCTTTATAAGTGTTTAGAGTACAGCACATCTT
TGAACCATTGGTTTTGTACTTTAGCTTCCAAATCCAAGTATTGTATTGTG
CATAAACGATTTGTTTGAAAACATACCAGACAGTTAAAGCAGCAAACAGG
TACCCAACACAATATGAAAACATGTAGGCTCCTTAGTGGGCTTTAAAAGT
CAGGCGTTTTTGCTGATGTCATGTCAGTTCTATCACACTTGGTTTTTCCT
GCCTATGGAGGCTGGAAACAATGAACCAAGTGCAATAGAAACCAGGTGTG
ATAGAACTGACATGCCATCACAAAAAACACTTGTAGAGCCTATTAAGGTA
GCTAGAAGAGGTTTGGTGAAGTGCAGTTACATTAACATTAATCCATTGGG
TTACATAAATCCACCACTTAGTGGGTTTGAGAGATCTCTAGTTCAGCACT
CCCCTGGTATGCATGCACAGTTTAGATATACAGGAGTGCATTATACTGGG
GGCGTTGGGTTGGAGATCTGTTTGGATGTCTCTTTTCAGGGTGGCGGAAT
TATGAACCCTGGTGGAATTACGTTTAGTAGATGTTAATTCTATATATGGC
TGGCGTGTTGCTTGAGATAAGGTGTACTGTGCACA Coding sequence (CDS) from alignment at Sc0000372:67560..74244- >transcript:BL96507_cuf9 ID=transcript:BL96507_cuf9|Name=transcript:BL96507_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=3930bp|location=Sequence derived from alignment at Sc0000372:67560..74244- (Branchiostoma lanceolatum) CAGTNCATCCAGCCTGAAACACAGGCCATCATGAACTGGACCAGGAGTAT ACCATTCTCCCTGTCTGCCATCTTCCATGGTGGGGCAGTAGTTGCAAACT ATCCGTGGGACAACACACCATTAGGACAGAATGGCCCGTCAATCTACAGC CGTTCTCCTGATGACGACATTTACCGACACCTTGCTCTGACGTACTCTGA GAACCACGGTACCATGCACCAGGGCGACATCTGCTCCGGGGATTTCTTTG AAGATGGCATCTCCAATGGAGCAGACTGGTATCCACTGAGAGGAGGGATG CAGGACTGGGTGTACATCCATGGGGAGTGCCTGACAGTCACCCTGGAAGT TTCCTGCTGCAAATATCCAACTCAGGACCAGCTTGGGGACCACTGGACTC AAAATAAGAACTCTCTCATAGAACTACTTCTGCAGGTGCATAGAGGTATA AAGGGCCAAGTTTTCATCAATGGAACAGACGTGCCATTCTCAGAGGCCAC TGTAACCATAGGGGACAGGGACAACACCTTCCACACTACGTCTGATGGCG AGTTCTGGAGGATTCTCGTTCCTGGGCAGTACAGTGTGACGGTATCCAAA GCTGGCTTCAGCAGTGAGACTAGGACAGTGACCGTCCCCAGCAACCTGAC TTTCAGTGCGGTGATAGAGGACTTCTACTTGGTCGAGAACGGCACCAGCT CAGCGCCAAAAGCTTCCGTACCGTCCCTTACCTTCATCATTACCTCAACA CTAATATGCCTGCTGAAAGTGAAAACTGTCTTTTAACAGTNCATCCAGCC TGAAACACAGGCCATCATGAACTGGACCAGGAGTATACCATTCTCCCTGT CTGCCATCTTCCATGGTGGGGCAGTAGTTGCAAACTATCCGTGGGACAAC ACACCATTAGGACAGAATGGCCCGTCAATCTACAGCCGTTCTCCTGATGA CGACATTTACCGACACCTTGCTCTGACGTACTCTGAGAACCACGGTACCA TGCACCAGGGCGACATCTGCTCCGGGGATTTCTTTGAAGATGGCATCTCC AATGGAGCAGACTGGTATCCACTGAGAGGAGGGATGCAGGACTGGGTGTA CATCCATGGGGAGTGCCTGACAGTCACCCTGGAAGTTTCCTGCTGCAAAT ATCCAACTCAGGACCAGCTTGGGGACCACTGGACTCAAAATAAGAACTCT CTCATAGAACTACTTCTGCAGGTGCATAGAGGTATAAAGGGCCAAGTTTT CATCAATGGAACAGACGTGCCATTCTCAGAGGCCACTGTAACCATAGGGG ACAGGGACAACACCTTCCACACTACGTCTGATGGCGAGTTCTGGAGGATT CTCGTTCCTGGGCAGTACAGTGTGACGGTATCCAAAGCTGGCTTCAGCAG TGAGACTAGGACAGTGACCGTCCCCAGCAACCTGACTTTCAGTGCGGTGA TAGAGGACTTCTACTTGGTCGAGAACGGCACCAGCTCAGCGCCAAAAGCT TCCGTACCGTCCCTTACCTTCATCATTACCTCAACACTAATATGCCTGCT GAAAGTGAAAACTGTCTTTTAACAGTNCATCCAGCCTGAAACACAGGCCA TCATGAACTGGACCAGGAGTATACCATTCTCCCTGTCTGCCATCTTCCAT GGTGGGGCAGTAGTTGCAAACTATCCGTGGGACAACACACCATTAGGACA GAATGGCCCGTCAATCTACAGCCGTTCTCCTGATGACGACATTTACCGAC ACCTTGCTCTGACGTACTCTGAGAACCACGGTACCATGCACCAGGGCGAC ATCTGCTCCGGGGATTTCTTTGAAGATGGCATCTCCAATGGAGCAGACTG GTATCCACTGAGAGGAGGGATGCAGGACTGGGTGTACATCCATGGGGAGT GCCTGACAGTCACCCTGGAAGTTTCCTGCTGCAAATATCCAACTCAGGAC CAGCTTGGGGACCACTGGACTCAAAATAAGAACTCTCTCATAGAACTACT TCTGCAGGTGCATAGAGGTATAAAGGGCCAAGTTTTCATCAATGGAACAG ACGTGCCATTCTCAGAGGCCACTGTAACCATAGGGGACAGGGACAACACC TTCCACACTACGTCTGATGGCGAGTTCTGGAGGATTCTCGTTCCTGGGCA GTACAGTGTGACGGTATCCAAAGCTGGCTTCAGCAGTGAGACTAGGACAG TGACCGTCCCCAGCAACCTGACTTTCAGTGCGGTGATAGAGGACTTCTAC TTGGTCGAGAACGGCACCAGCTCAGCGCCAAAAGCTTCCGTACCGTCCCT TACCTTCATCATTACCTCAACACTAATATGCCTGCTGAAAGTGAAAACTG TCTTTTAACAGTNCATCCAGCCTGAAACACAGGCCATCATGAACTGGACC AGGAGTATACCATTCTCCCTGTCTGCCATCTTCCATGGTGGGGCAGTAGT TGCAAACTATCCGTGGGACAACACACCATTAGGACAGAATGGCCCGTCAA TCTACAGCCGTTCTCCTGATGACGACATTTACCGACACCTTGCTCTGACG TACTCTGAGAACCACGGTACCATGCACCAGGGCGACATCTGCTCCGGGGA TTTCTTTGAAGATGGCATCTCCAATGGAGCAGACTGGTATCCACTGAGAG GAGGGATGCAGGACTGGGTGTACATCCATGGGGAGTGCCTGACAGTCACC CTGGAAGTTTCCTGCTGCAAATATCCAACTCAGGACCAGCTTGGGGACCA CTGGACTCAAAATAAGAACTCTCTCATAGAACTACTTCTGCAGGTGCATA GAGGTATAAAGGGCCAAGTTTTCATCAATGGAACAGACGTGCCATTCTCA GAGGCCACTGTAACCATAGGGGACAGGGACAACACCTTCCACACTACGTC TGATGGCGAGTTCTGGAGGATTCTCGTTCCTGGGCAGTACAGTGTGACGG TATCCAAAGCTGGCTTCAGCAGTGAGACTAGGACAGTGACCGTCCCCAGC AACCTGACTTTCAGTGCGGTGATAGAGGACTTCTACTTGGTCGAGAACGG CACCAGCTCAGCGCCAAAAGCTTCCGTACCGTCCCTTACCTTCATCATTA CCTCAACACTAATATGCCTGCTGAAAGTGAAAACTGTCTTTTAACAGTNC ATCCAGCCTGAAACACAGGCCATCATGAACTGGACCAGGAGTATACCATT CTCCCTGTCTGCCATCTTCCATGGTGGGGCAGTAGTTGCAAACTATCCGT GGGACAACACACCATTAGGACAGAATGGCCCGTCAATCTACAGCCGTTCT CCTGATGACGACATTTACCGACACCTTGCTCTGACGTACTCTGAGAACCA CGGTACCATGCACCAGGGCGACATCTGCTCCGGGGATTTCTTTGAAGATG GCATCTCCAATGGAGCAGACTGGTATCCACTGAGAGGAGGGATGCAGGAC TGGGTGTACATCCATGGGGAGTGCCTGACAGTCACCCTGGAAGTTTCCTG CTGCAAATATCCAACTCAGGACCAGCTTGGGGACCACTGGACTCAAAATA AGAACTCTCTCATAGAACTACTTCTGCAGGTGCATAGAGGTATAAAGGGC CAAGTTTTCATCAATGGAACAGACGTGCCATTCTCAGAGGCCACTGTAAC CATAGGGGACAGGGACAACACCTTCCACACTACGTCTGATGGCGAGTTCT GGAGGATTCTCGTTCCTGGGCAGTACAGTGTGACGGTATCCAAAGCTGGC TTCAGCAGTGAGACTAGGACAGTGACCGTCCCCAGCAACCTGACTTTCAG TGCGGTGATAGAGGACTTCTACTTGGTCGAGAACGGCACCAGCTCAGCGC CAAAAGCTTCCGTACCGTCCCTTACCTTCATCATTACCTCAACACTAATA TGCCTGCTGAAAGTGAAAACTGTCTTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000372 | genome | Sc0000372:67560..74244 - |
Properties
Property Name | Value |
Transcript id | BL96507_cuf9 |
Biotype | protein_coding |
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