|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96505_cuf0 >transcript:BL96505_cuf0-protein ID=transcript:BL96505_cuf0-protein|Name=transcript:BL96505_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=336bp
GINKIWRARLVHYNRQHEEGWSKTPDTNAIVRSNGEVLWAYPITIHSTCV
LDIVNFPFDVQRCPLKFGSWTYDASSLKLLNVSVRGNMDEFIENGEWTLM
SFDLEVNHVEYSCCPGVLWDDMTYTITIKRRSKFYVLYFVSPSVLIAFMA
VCGFWLPPDSGERLLLCFTLLLSLTWLLQVVTHHLPDTATSIPLISAFFI
ATILLAGTSSALTIFTLSLHFKTFDLQPVPKWLRYMFCLGPLHPNIVNAP
KANGHEDMDASFATDDAMPMEALQPSRTFRARNVLQHLKDEHQSMSRYGK
LEKEWRILARKIDRCLLVAFFIVLVVLTGAIFGPHV Run BLAST on NCBI mRNA from alignment at Sc0000017:3914479..3916626+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96505_cuf0 ID=transcript:BL96505_cuf0|Name=transcript:BL96505_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2148bp|location=Sequence derived from alignment at Sc0000017:3914479..3916626+ (Branchiostoma lanceolatum)
TTGGGATTAATAAAATATGGAGGGCGAGACTCGTGCATTATAACAGGTAG
GGCTACAAAACAATGACAATCTTCAAATTGTCTTAAGAAAGAATATTGGA
CTTCACTAATGAAAAATTATATTGTCTACTAAGACAAAGCAAAAGAATAA
GGCCATTACTATTGGCAGTATATTCCAAATGAGGACACACTGGATTGGGC
CTACTAGCGATTTTTCTTGGTACTGTAGCAGAATTTTCTGTTTTTGTATC
TTTTGCTTCGGACATGCTATGGTCTTGATCTTCCTGAAATAGTCCAGGTT
TAAAGTTTATGTGTTTGTGCTTATATGTGTATGTATGGGCCTGTTTTTTT
CGTAGTTCTATGTCTTCCCAATATCAATGACGTTTTTGTTGACTCCCGCA
GACAACACGAGGAAGGCTGGTCAAAGACACCGGACACGAACGCCATCGTG
CGAAGCAACGGCGAAGTGCTTTGGGCGTACCCGATCACCATACACAGCAC
TTGTGTCCTGGACATTGTTAACTTTCCTTTCGACGTGCAGAGATGTCCCC
TGAAGTTTGGCTCCTGGACCTACGATGCATCCAGCCTGAAGCTACTCAAT
GTTTCTGTCAGAGGAAATATGGATGAGTTTATTGAAAACGGTGAATGGAC
ACTGATGTCCTTTGACCTGGAAGTGAATCATGTGGAGTACTCCTGCTGCC
CCGGTGTATTGTGGGATGACATGACTTACACAATCACCATAAAACGACGT
TCGAAGTTTTACGTACTCTATTTTGTCTCGCCAAGCGTGCTCATCGCTTT
TATGGCTGTGTGTGGGTTTTGGTTGCCACCGGATTCAGGGGAAAGGTTAC
TGCTTTGTTTTACCTTGCTGCTGTCTCTGACTTGGTTATTGCAGGTCGTT
ACCCATCATCTTCCAGACACCGCCACAAGCATCCCTCTAATAAGTACGTA
CAGCATTATTTTTAGCATAGACTGTACACAGGCATAGGCATTCCCCAGCA
GTACATAACAGTAAACAACACATATAGACAGTATAAAGTCAGTACATAGC
CAGTGGATAATCATAGACAGGAAATAAACAGCACATAGACAGTGTATAGA
CAGTACATAGAAAGTATATAACAGTAAACGGCATCCACAAATACAGTATG
TAGTCAGTACATAGCCAATGCATAGTACATAAACATCACACAAATAGTAC
ATAGACAGCGTCGTAAACAATACCTTAATCATTTGCCTTGCCATAACTTG
TAGGTTCACATTAAACTTTATTTACTAAAGCCAAACGTTGTTGTTTTTTC
AGGCGCATTCTTCATTGCGACCATCCTTCTTGCTGGCACATCGTCAGCTC
TAACCATCTTTACCCTGAGTCTGCATTTCAAGACGTTCGACCTCCAGCCC
GTCCCAAAATGGCTGCGATATATGTTTTGTCTTGGCCCCCTTCATCCAAA
CATAGTTAACGCACCAAAGGCCAATGGTCATGAGGACATGGATGCGTCGT
TTGCGACCGATGATGCAATGCCAATGGAAGCATTACAGCCTTCCCGCACG
TTCAGAGCTAGGAACGTCTTGCAGCATCTCAAAGATGAACACCAGAGCAT
GTCCCGTTATGGGAAACTAGAGAAAGAGTGGAGAATCCTGGCTAGAAAAA
TAGACAGATGCCTTTTGGTCGCATTTTTCATCGTTCTGGTTGTCCTAACT
GGAGCGATTTTTGGACCACATGTGTAGTCGACAGAAAAATGTTAAATATA
AGAATTATGAAAGGTTTTGTGGTTGTAATCTTTGCAAAGCTATATAATGT
TTGTGTTTCATATCAGTTTTCACAATCATTTGCTAATGTTTTAATGATGA
CCAATCCAATATATTATCTTAATGCACTACATGATATCCAATAGTATAAA
CACTATGCTGTCTTCGTGATCTTATTTGCTTGTCTGATTCTTCGAACAGA
GAATCAACCAGAAAATGTCATTAGACAATTTTCATTCATTATTCAGACAT
TTTTATGAGTATGATGAATACCCATTTGATAACCAATGTCAAACTATGTC
ACTATTTACTTTTCTTAAGAATAAAACACTATACCAAGCGCCTTCTGACA
TTCTATGGATTTGGAACATGCTATGAAAAGTACAGGAGAACATTCACC Coding sequence (CDS) from alignment at Sc0000017:3914479..3916626+ >transcript:BL96505_cuf0 ID=transcript:BL96505_cuf0|Name=transcript:BL96505_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3033bp|location=Sequence derived from alignment at Sc0000017:3914479..3916626+ (Branchiostoma lanceolatum)
GGGATTAATAAAATATGGAGGGCGAGACTCGTGCATTATAACAGACAACA
CGAGGAAGGCTGGTCAAAGACACCGGACACGAACGCCATCGTGCGAAGCA
ACGGCGAAGTGCTTTGGGCGTACCCGATCACCATACACAGCACTTGTGTC
CTGGACATTGTTAACTTTCCTTTCGACGTGCAGAGATGTCCCCTGAAGTT
TGGCTCCTGGACCTACGATGCATCCAGCCTGAAGCTACTCAATGTTTCTG
TCAGAGGAAATATGGATGAGTTTATTGAAAACGGTGAATGGACACTGATG
TCCTTTGACCTGGAAGTGAATCATGTGGAGTACTCCTGCTGCCCCGGTGT
ATTGTGGGATGACATGACTTACACAATCACCATAAAACGACGTTCGAAGT
TTTACGTACTCTATTTTGTCTCGCCAAGCGTGCTCATCGCTTTTATGGCT
GTGTGTGGGTTTTGGTTGCCACCGGATTCAGGGGAAAGGTTACTGCTTTG
TTTTACCTTGCTGCTGTCTCTGACTTGGTTATTGCAGGTCGTTACCCATC
ATCTTCCAGACACCGCCACAAGCATCCCTCTAATAAGCGCATTCTTCATT
GCGACCATCCTTCTTGCTGGCACATCGTCAGCTCTAACCATCTTTACCCT
GAGTCTGCATTTCAAGACGTTCGACCTCCAGCCCGTCCCAAAATGGCTGC
GATATATGTTTTGTCTTGGCCCCCTTCATCCAAACATAGTTAACGCACCA
AAGGCCAATGGTCATGAGGACATGGATGCGTCGTTTGCGACCGATGATGC
AATGCCAATGGAAGCATTACAGCCTTCCCGCACGTTCAGAGCTAGGAACG
TCTTGCAGCATCTCAAAGATGAACACCAGAGCATGTCCCGTTATGGGAAA
CTAGAGAAAGAGTGGAGAATCCTGGCTAGAAAAATAGACAGATGCCTTTT
GGTCGCATTTTTCATCGTTCTGGTTGTCCTAACTGGAGCGATTTTTGGAC
CACATGTGTAGGGGATTAATAAAATATGGAGGGCGAGACTCGTGCATTAT
AACAGACAACACGAGGAAGGCTGGTCAAAGACACCGGACACGAACGCCAT
CGTGCGAAGCAACGGCGAAGTGCTTTGGGCGTACCCGATCACCATACACA
GCACTTGTGTCCTGGACATTGTTAACTTTCCTTTCGACGTGCAGAGATGT
CCCCTGAAGTTTGGCTCCTGGACCTACGATGCATCCAGCCTGAAGCTACT
CAATGTTTCTGTCAGAGGAAATATGGATGAGTTTATTGAAAACGGTGAAT
GGACACTGATGTCCTTTGACCTGGAAGTGAATCATGTGGAGTACTCCTGC
TGCCCCGGTGTATTGTGGGATGACATGACTTACACAATCACCATAAAACG
ACGTTCGAAGTTTTACGTACTCTATTTTGTCTCGCCAAGCGTGCTCATCG
CTTTTATGGCTGTGTGTGGGTTTTGGTTGCCACCGGATTCAGGGGAAAGG
TTACTGCTTTGTTTTACCTTGCTGCTGTCTCTGACTTGGTTATTGCAGGT
CGTTACCCATCATCTTCCAGACACCGCCACAAGCATCCCTCTAATAAGCG
CATTCTTCATTGCGACCATCCTTCTTGCTGGCACATCGTCAGCTCTAACC
ATCTTTACCCTGAGTCTGCATTTCAAGACGTTCGACCTCCAGCCCGTCCC
AAAATGGCTGCGATATATGTTTTGTCTTGGCCCCCTTCATCCAAACATAG
TTAACGCACCAAAGGCCAATGGTCATGAGGACATGGATGCGTCGTTTGCG
ACCGATGATGCAATGCCAATGGAAGCATTACAGCCTTCCCGCACGTTCAG
AGCTAGGAACGTCTTGCAGCATCTCAAAGATGAACACCAGAGCATGTCCC
GTTATGGGAAACTAGAGAAAGAGTGGAGAATCCTGGCTAGAAAAATAGAC
AGATGCCTTTTGGTCGCATTTTTCATCGTTCTGGTTGTCCTAACTGGAGC
GATTTTTGGACCACATGTGTAGGGGATTAATAAAATATGGAGGGCGAGAC
TCGTGCATTATAACAGACAACACGAGGAAGGCTGGTCAAAGACACCGGAC
ACGAACGCCATCGTGCGAAGCAACGGCGAAGTGCTTTGGGCGTACCCGAT
CACCATACACAGCACTTGTGTCCTGGACATTGTTAACTTTCCTTTCGACG
TGCAGAGATGTCCCCTGAAGTTTGGCTCCTGGACCTACGATGCATCCAGC
CTGAAGCTACTCAATGTTTCTGTCAGAGGAAATATGGATGAGTTTATTGA
AAACGGTGAATGGACACTGATGTCCTTTGACCTGGAAGTGAATCATGTGG
AGTACTCCTGCTGCCCCGGTGTATTGTGGGATGACATGACTTACACAATC
ACCATAAAACGACGTTCGAAGTTTTACGTACTCTATTTTGTCTCGCCAAG
CGTGCTCATCGCTTTTATGGCTGTGTGTGGGTTTTGGTTGCCACCGGATT
CAGGGGAAAGGTTACTGCTTTGTTTTACCTTGCTGCTGTCTCTGACTTGG
TTATTGCAGGTCGTTACCCATCATCTTCCAGACACCGCCACAAGCATCCC
TCTAATAAGCGCATTCTTCATTGCGACCATCCTTCTTGCTGGCACATCGT
CAGCTCTAACCATCTTTACCCTGAGTCTGCATTTCAAGACGTTCGACCTC
CAGCCCGTCCCAAAATGGCTGCGATATATGTTTTGTCTTGGCCCCCTTCA
TCCAAACATAGTTAACGCACCAAAGGCCAATGGTCATGAGGACATGGATG
CGTCGTTTGCGACCGATGATGCAATGCCAATGGAAGCATTACAGCCTTCC
CGCACGTTCAGAGCTAGGAACGTCTTGCAGCATCTCAAAGATGAACACCA
GAGCATGTCCCGTTATGGGAAACTAGAGAAAGAGTGGAGAATCCTGGCTA
GAAAAATAGACAGATGCCTTTTGGTCGCATTTTTCATCGTTCTGGTTGTC
CTAACTGGAGCGATTTTTGGACCACATGTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000017 | genome | Sc0000017:3914479..3916626 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96505_cuf0 |
| Biotype | protein_coding |
|
