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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96503_cuf0 >transcript:BL96503_cuf0-protein ID=transcript:BL96503_cuf0-protein|Name=transcript:BL96503_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=261bp
MGDKNRIQTTLVLLLIYVLWWGRGDSAITVQQAQHLKSRFERVKSKIDAV
NFKVNGTAGSLKIMTAKRLPKIPDVPQPSPTSSNTPEPDLISPISPTTSA
PGVNVALGKTAFQTSIQSYWSPSAGERYSGEPGHAVNGNTDSDGNGNSCS
HTLNEANPAWWVDLGQSYTINRVVIYYTSCCWDRFNPFNIHIGDSDQVST
NPKCGSDHEIVRRDISISCDGMRGRYVGVRLSGSSRRLHLCEVQVFSNPE
LPRPGPISPTT Run BLAST on NCBI mRNA from alignment at Sc0000017:1568223..1571747+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96503_cuf0 ID=transcript:BL96503_cuf0|Name=transcript:BL96503_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3525bp|location=Sequence derived from alignment at Sc0000017:1568223..1571747+ (Branchiostoma lanceolatum)
CTACAATTAGATTTTCTCAAACTTCAAATTCTTCACAATGTATTCAAATG
TCATTTTCAACTTACAACTAAATTGCAAATGACGTGCAAAGATTATTGAG
TTTACTGTTCACAATGTAGTGAGATTTTCTGGCTTTAAGTTATCATTGGT
GCTTTTAGCTGTCGCCAAGTTGCCAACCGACAACTTTAAAAGCATAAGTG
CGCTTTGTGCTCGTCCAAACCAGAACACTTCTTGCTTCATGCAGTCGACG
TGAGCTTGGGTCATGCAGTAACGTATCAGAAATCTTCTCGCCGGGGAAAG
GCGTTCAGTATCTCCGATACTCAAAGATGGGAGACAAGAACCGTATCCAA
ACGACCCTGGTGTTGTTGTTGATTTACGTTCTGTGGTGGGGGAGGGGAGA
TTCCGCCATTACAGTGCAACAAGCTCAGCATCTTAAAAGTAAGTACAACA
GATCTCTCTGTGCTCATTTTAGTACTGTGACAAAACGTCAATTTCAAGCT
GGCACAAATAAATGGATATTCATGAATGGATTAACCCAGTATATAAAACA
CGTTTTGTACGGGAAGTTTCGACGAGCAATTTGAATTCAGATCGTTGTAC
ATGGGCGAACTATATGTGTAGCAAAATTTACTGGTTCCCGTGTGTACATC
AACTTAAGAATGGGGTTTCTACTGTTATTGTGTATAGTGTTACGTCTATA
AACCTCCTTGGTCTATATAGGCATTTATGCCGGAATAACGTTCGATACTG
GTGTTACGGACCGGTCGATATGTCACGGTATATATGTGATCCATCCACAA
ACACTGGGTCTTGTAGATTAGGAATGAATGGCAGAGCAACTCTGCAGATC
TGATAGGTACATTTTTGTGATGCTGCAGGCAGATTTGAAAGGGTGAAATC
AAAGATTGACGCGGTCAACTTTAAAGTAAACGGAACTGCTGGGAGTCTGA
AAATCATGACGGCGAAAAGACTTCCTAAGATCCCGGATGTTCCCCAGCCC
AGTCCCACTTCTTCAAACACGCCAGAACCTGGTAAGGCCTCAGTGTCGTT
ATTACCCCAAGAGTTTCTTACCCTCCTTGATTACTTTTACCAAGAAAGTT
ACATTTTTCGGGGCCGTTTGTGTGTGTGTGTGAGTCCGCATGTATGTGTC
GGTATGTGGACAGCATAACTCGAGAAACTGTGAATGGATCCTTATGGCAT
TTGATAGGTGGCTAGGAGTGGGGAAAACGAAGTTCGCTATCGGGGCCCCT
AGTGGCTTTCGGAGGTACTGCAGCTGATAGATTAAGTGATTATTTGCATA
ATTAGATAATACTTATACATCGTAGACGTATTTTTCGCTATTTTAGGGCA
GGTTTTTCAATATTATATTTTGACACGGAAATGATACCAAACATCCCTAT
CAACATAATGTTATGATAGTGAAATTCAAAGCAAATATAGTAATCATTAC
TTTTGCTTCTTATGTTTTTTTTCTGACAGATGTCTTGCCAAGGCCGGATA
TCATCATCGCGCGCTCTCTCTCTCTCTATATATATATAGGCTAATCTGAC
AATTTCTTTTTTTTGTAATATCTTAGATCTTATAAGTCCAATATCTCCGA
CCACATCGGCACCCGGTAAGGTTGCATTCATATTATATACTCAGGTGACT
GTTATTGCATCAAGCTTAACTAACTACCGAAGCTTTGACTTGAGTGATTA
TCCATTACGGTGCTACAAATCGCCGTGATTGACAGCATGGCTGAACGTGC
TGCTGATTTGATTGACACGTTTAGGATTGCGACATGTATCTGGTGTAGTA
TAAAATATGCACTTTATCGTCGGTCAATCTCAAAGATGATGAGGACTGTC
AATGATGTAGTATGTGTTTTTGGCGACGCCTCAGTGGCGAGCCAAATGGT
ATAGTATTGTGTATTCTTCGGTTGTCTGATTCAGAGATCTCTATGTTGTT
TATTTGTACCAAAGACTTGGCTGATCAGCATGAGTCGGGAATGTGAATAT
GACACCGTTTGAGACAGACTCTATTTCCTTTGGCAGGTGTCAATGTCGCT
CTAGGCAAGACGGCGTTCCAAACAAGCATACAGTCGTACTGGTCACCATC
TGCGGGCGAGCGGTACAGTGGGGAACCCGGCCATGCTGTAAATGGAAACA
CCGATAGTGATGGAAACGGAAATTCCTGCTCGCACACCCTGAATGAGGCC
AATCCTGCGTGGTGGGTGGATCTTGGACAATCATATACGATTAACAGGTA
AGCGTACATTTTTTCTGCAACATTACCATTTGCTACGCAAGCTCCAATAA
ACTAGTAACACGTTTCTCTCCCAACACTTTCTCATTCATATGGTGTTTGG
TAATTCGTAATTTGACATGAAGACTCTGACATCAAGGGGACAATATCTTT
GTTGCTTTGTCAACACCATCGACAGGGTGGTCATCTACTACACTTCCTGC
TGTTGGGATCGATTCAACCCCTTTAACATCCACATCGGGGATTCTGACCA
GGTCAGCACAAACCCAAAGTGTGGTAGTGATCATGAAATCGTAAGGCGAG
ATATTTCCATCTCCTGTGACGGCATGAGAGGACGGTACGTCGGCGTCCGT
CTTTCCGGTTCGTCCCGAAGACTGCACTTGTGCGAGGTCCAAGTCTTTTC
GAATCCAGGTATGCCTTTGACACTCCAGTCTACGGTGGATGACTAGACAA
ACAAATCTTGGAGGGGGTATTTTACTTAAACCACAGTCTTAACCTCATGT
GTTCCAGCGTGTTTGTTTCAGGTATGTCTTTGACACTAACGTCTCTAATC
GTCTACGACGCAAGACTAGACAAACAAAAGCCGACTATTCCTGTTGCGTT
CTCTCGTTGGAATGGGTCATTTTCGTAAACCTGAGATTATAACCCATGTG
TTTCAGCGCGTTTGCGCCTCTCCCGTCTGTACTTTTTTCTAAATATTATT
TTCTTTTGAATCGAACACCCTCAATGTCAGTAGAGCTTAATGTCGGAAGT
GCACGTACCTCCCAGGTAGCATTGTCAATGTTATTGGGTTATCCTTTCAC
CGTTACGCTCGATTCTATCAAACCTTAGCCAACTGTACCAAACATAACAA
GCTATCTGCCACTAAAAACACAAGACCATAACACGTTCAGGTCAAAATAT
GCAGAAAATGGAAATTCTGCTGCACTACTAAGGCCACATGCCCGGGGACT
CAAAATCGACCTTGAACTTTGTCTTACCAACTCCTACTAACATACCAAAT
ACCATCATAATCCATCCAGAGGCTCTTGAGTTATACTGACTACAAACATC
CGCAAACATACGCACACACACACACAAACACACGCACACACACACAAACA
CACACACACACACACGCACACAGACACACACACACACACACACACTAACA
CACTAACACAAACAGACACACATATCTCCATTTTACATGGATATGATAGT
GAGCAACTCTGACAAATGCATCTTTTCAAATACCTCAGAACTTCCCCGAC
CCGGTCCAATTTCTCCGACCACACA Coding sequence (CDS) from alignment at Sc0000017:1568223..1571747+ >transcript:BL96503_cuf0 ID=transcript:BL96503_cuf0|Name=transcript:BL96503_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4698bp|location=Sequence derived from alignment at Sc0000017:1568223..1571747+ (Branchiostoma lanceolatum)
ATGGGAGACAAGAACCGTATCCAAACGACCCTGGTGTTGTTGTTGATTTA
CGTTCTGTGGTGGGGGAGGGGAGATTCCGCCATTACAGTGCAACAAGCTC
AGCATCTTAAAAGCAGATTTGAAAGGGTGAAATCAAAGATTGACGCGGTC
AACTTTAAAGTAAACGGAACTGCTGGGAGTCTGAAAATCATGACGGCGAA
AAGACTTCCTAAGATCCCGGATGTTCCCCAGCCCAGTCCCACTTCTTCAA
ACACGCCAGAACCTGATCTTATAAGTCCAATATCTCCGACCACATCGGCA
CCCGGTGTCAATGTCGCTCTAGGCAAGACGGCGTTCCAAACAAGCATACA
GTCGTACTGGTCACCATCTGCGGGCGAGCGGTACAGTGGGGAACCCGGCC
ATGCTGTAAATGGAAACACCGATAGTGATGGAAACGGAAATTCCTGCTCG
CACACCCTGAATGAGGCCAATCCTGCGTGGTGGGTGGATCTTGGACAATC
ATATACGATTAACAGGGTGGTCATCTACTACACTTCCTGCTGTTGGGATC
GATTCAACCCCTTTAACATCCACATCGGGGATTCTGACCAGGTCAGCACA
AACCCAAAGTGTGGTAGTGATCATGAAATCGTAAGGCGAGATATTTCCAT
CTCCTGTGACGGCATGAGAGGACGGTACGTCGGCGTCCGTCTTTCCGGTT
CGTCCCGAAGACTGCACTTGTGCGAGGTCCAAGTCTTTTCGAATCCAGAA
CTTCCCCGACCCGGTCCAATTTCTCCGACCACAATGGGAGACAAGAACCG
TATCCAAACGACCCTGGTGTTGTTGTTGATTTACGTTCTGTGGTGGGGGA
GGGGAGATTCCGCCATTACAGTGCAACAAGCTCAGCATCTTAAAAGCAGA
TTTGAAAGGGTGAAATCAAAGATTGACGCGGTCAACTTTAAAGTAAACGG
AACTGCTGGGAGTCTGAAAATCATGACGGCGAAAAGACTTCCTAAGATCC
CGGATGTTCCCCAGCCCAGTCCCACTTCTTCAAACACGCCAGAACCTGAT
CTTATAAGTCCAATATCTCCGACCACATCGGCACCCGGTGTCAATGTCGC
TCTAGGCAAGACGGCGTTCCAAACAAGCATACAGTCGTACTGGTCACCAT
CTGCGGGCGAGCGGTACAGTGGGGAACCCGGCCATGCTGTAAATGGAAAC
ACCGATAGTGATGGAAACGGAAATTCCTGCTCGCACACCCTGAATGAGGC
CAATCCTGCGTGGTGGGTGGATCTTGGACAATCATATACGATTAACAGGG
TGGTCATCTACTACACTTCCTGCTGTTGGGATCGATTCAACCCCTTTAAC
ATCCACATCGGGGATTCTGACCAGGTCAGCACAAACCCAAAGTGTGGTAG
TGATCATGAAATCGTAAGGCGAGATATTTCCATCTCCTGTGACGGCATGA
GAGGACGGTACGTCGGCGTCCGTCTTTCCGGTTCGTCCCGAAGACTGCAC
TTGTGCGAGGTCCAAGTCTTTTCGAATCCAGAACTTCCCCGACCCGGTCC
AATTTCTCCGACCACAATGGGAGACAAGAACCGTATCCAAACGACCCTGG
TGTTGTTGTTGATTTACGTTCTGTGGTGGGGGAGGGGAGATTCCGCCATT
ACAGTGCAACAAGCTCAGCATCTTAAAAGCAGATTTGAAAGGGTGAAATC
AAAGATTGACGCGGTCAACTTTAAAGTAAACGGAACTGCTGGGAGTCTGA
AAATCATGACGGCGAAAAGACTTCCTAAGATCCCGGATGTTCCCCAGCCC
AGTCCCACTTCTTCAAACACGCCAGAACCTGATCTTATAAGTCCAATATC
TCCGACCACATCGGCACCCGGTGTCAATGTCGCTCTAGGCAAGACGGCGT
TCCAAACAAGCATACAGTCGTACTGGTCACCATCTGCGGGCGAGCGGTAC
AGTGGGGAACCCGGCCATGCTGTAAATGGAAACACCGATAGTGATGGAAA
CGGAAATTCCTGCTCGCACACCCTGAATGAGGCCAATCCTGCGTGGTGGG
TGGATCTTGGACAATCATATACGATTAACAGGGTGGTCATCTACTACACT
TCCTGCTGTTGGGATCGATTCAACCCCTTTAACATCCACATCGGGGATTC
TGACCAGGTCAGCACAAACCCAAAGTGTGGTAGTGATCATGAAATCGTAA
GGCGAGATATTTCCATCTCCTGTGACGGCATGAGAGGACGGTACGTCGGC
GTCCGTCTTTCCGGTTCGTCCCGAAGACTGCACTTGTGCGAGGTCCAAGT
CTTTTCGAATCCAGAACTTCCCCGACCCGGTCCAATTTCTCCGACCACAA
TGGGAGACAAGAACCGTATCCAAACGACCCTGGTGTTGTTGTTGATTTAC
GTTCTGTGGTGGGGGAGGGGAGATTCCGCCATTACAGTGCAACAAGCTCA
GCATCTTAAAAGCAGATTTGAAAGGGTGAAATCAAAGATTGACGCGGTCA
ACTTTAAAGTAAACGGAACTGCTGGGAGTCTGAAAATCATGACGGCGAAA
AGACTTCCTAAGATCCCGGATGTTCCCCAGCCCAGTCCCACTTCTTCAAA
CACGCCAGAACCTGATCTTATAAGTCCAATATCTCCGACCACATCGGCAC
CCGGTGTCAATGTCGCTCTAGGCAAGACGGCGTTCCAAACAAGCATACAG
TCGTACTGGTCACCATCTGCGGGCGAGCGGTACAGTGGGGAACCCGGCCA
TGCTGTAAATGGAAACACCGATAGTGATGGAAACGGAAATTCCTGCTCGC
ACACCCTGAATGAGGCCAATCCTGCGTGGTGGGTGGATCTTGGACAATCA
TATACGATTAACAGGGTGGTCATCTACTACACTTCCTGCTGTTGGGATCG
ATTCAACCCCTTTAACATCCACATCGGGGATTCTGACCAGGTCAGCACAA
ACCCAAAGTGTGGTAGTGATCATGAAATCGTAAGGCGAGATATTTCCATC
TCCTGTGACGGCATGAGAGGACGGTACGTCGGCGTCCGTCTTTCCGGTTC
GTCCCGAAGACTGCACTTGTGCGAGGTCCAAGTCTTTTCGAATCCAGAAC
TTCCCCGACCCGGTCCAATTTCTCCGACCACAATGGGAGACAAGAACCGT
ATCCAAACGACCCTGGTGTTGTTGTTGATTTACGTTCTGTGGTGGGGGAG
GGGAGATTCCGCCATTACAGTGCAACAAGCTCAGCATCTTAAAAGCAGAT
TTGAAAGGGTGAAATCAAAGATTGACGCGGTCAACTTTAAAGTAAACGGA
ACTGCTGGGAGTCTGAAAATCATGACGGCGAAAAGACTTCCTAAGATCCC
GGATGTTCCCCAGCCCAGTCCCACTTCTTCAAACACGCCAGAACCTGATC
TTATAAGTCCAATATCTCCGACCACATCGGCACCCGGTGTCAATGTCGCT
CTAGGCAAGACGGCGTTCCAAACAAGCATACAGTCGTACTGGTCACCATC
TGCGGGCGAGCGGTACAGTGGGGAACCCGGCCATGCTGTAAATGGAAACA
CCGATAGTGATGGAAACGGAAATTCCTGCTCGCACACCCTGAATGAGGCC
AATCCTGCGTGGTGGGTGGATCTTGGACAATCATATACGATTAACAGGGT
GGTCATCTACTACACTTCCTGCTGTTGGGATCGATTCAACCCCTTTAACA
TCCACATCGGGGATTCTGACCAGGTCAGCACAAACCCAAAGTGTGGTAGT
GATCATGAAATCGTAAGGCGAGATATTTCCATCTCCTGTGACGGCATGAG
AGGACGGTACGTCGGCGTCCGTCTTTCCGGTTCGTCCCGAAGACTGCACT
TGTGCGAGGTCCAAGTCTTTTCGAATCCAGAACTTCCCCGACCCGGTCCA
ATTTCTCCGACCACAATGGGAGACAAGAACCGTATCCAAACGACCCTGGT
GTTGTTGTTGATTTACGTTCTGTGGTGGGGGAGGGGAGATTCCGCCATTA
CAGTGCAACAAGCTCAGCATCTTAAAAGCAGATTTGAAAGGGTGAAATCA
AAGATTGACGCGGTCAACTTTAAAGTAAACGGAACTGCTGGGAGTCTGAA
AATCATGACGGCGAAAAGACTTCCTAAGATCCCGGATGTTCCCCAGCCCA
GTCCCACTTCTTCAAACACGCCAGAACCTGATCTTATAAGTCCAATATCT
CCGACCACATCGGCACCCGGTGTCAATGTCGCTCTAGGCAAGACGGCGTT
CCAAACAAGCATACAGTCGTACTGGTCACCATCTGCGGGCGAGCGGTACA
GTGGGGAACCCGGCCATGCTGTAAATGGAAACACCGATAGTGATGGAAAC
GGAAATTCCTGCTCGCACACCCTGAATGAGGCCAATCCTGCGTGGTGGGT
GGATCTTGGACAATCATATACGATTAACAGGGTGGTCATCTACTACACTT
CCTGCTGTTGGGATCGATTCAACCCCTTTAACATCCACATCGGGGATTCT
GACCAGGTCAGCACAAACCCAAAGTGTGGTAGTGATCATGAAATCGTAAG
GCGAGATATTTCCATCTCCTGTGACGGCATGAGAGGACGGTACGTCGGCG
TCCGTCTTTCCGGTTCGTCCCGAAGACTGCACTTGTGCGAGGTCCAAGTC
TTTTCGAATCCAGAACTTCCCCGACCCGGTCCAATTTCTCCGACCACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000017 | genome | Sc0000017:1568223..1571747 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96503_cuf0 |
| Biotype | protein_coding |
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