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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96442_cuf10 >transcript:BL96442_cuf10-protein ID=transcript:BL96442_cuf10-protein|Name=transcript:BL96442_cuf10|organism=Branchiostoma lanceolatum|type=polypeptide|length=361bp
TITLDRMESLQVQSDEDLTGSKITSSKPVAVLSGNLAAMIGQGATSKDHL
VEMVPPVETWGTEFALVPMVGRKAGDLFRVLASQDNTQLVLTDHLAPIIL
NAGEFWEFNMPSDQYKYLTASKPALVAQYSKSQNIDVSAIEPFMMIVPSL
SQFAARYTFVAADITSENPMIHHVNIVIKASHKYGLRMDGTPLSSDITWA
GIPGTDLSAAHIPITSGAHVLNHASPLVIFGISVYGYNQEMPLWSYGYPG
GLNLNMSCIRTLQVAGDGVDNDCDQLFDEEIPNGIDDDGDGWTDEDVPAT
GCDKPMGMESGFIPDGSITASSEFDHSLRASRARLNIQNDEGGRGSWAAR
QRNINQWLQVR Run BLAST on NCBI mRNA from alignment at Sc0000067:605253..609510- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96442_cuf10 ID=transcript:BL96442_cuf10|Name=transcript:BL96442_cuf10|organism=Branchiostoma lanceolatum|type=mRNA|length=4258bp|location=Sequence derived from alignment at Sc0000067:605253..609510- (Branchiostoma lanceolatum)
TACCATCACATTAGACAGAATGGAGAGTCTACAAGTTCAGAGTGACGAGG
ACCTGACAGGTAACATTTACACACCAGTACACTTTTGTTAACAGGTATCC
TTCTAACCTATTGGGGAATGCTGAAAAGGGCATGATTTTTACAAGCAGTG
CCCAATGATTAAGGACTGACATTTAGAATACAGGATGGGGCCAAAGGTAT
GTTCAATGTACAAAGGACTTAACTCACTAGATTCCCCTTATTTGTTACCT
CCTGTTCATAACAAAAATTCTGATGTAGCATCAGATTCCCACTGAAAATA
GCAATTGCAAACATTCCAATGTACAGTGTATTTCACCTGGCAGTAATTAT
CCTTATAGTCTGTGGTATTTTCCAGATTTTTGGGAAAATAGTAGAAATCG
GCCAAATACAGTGAATAGTGTGCCAGGGGTACTCCGCTATACAGGGAAGC
TCAATAGGCGAACGTGGATGGCAGATTGGACCCTCTCTCCGTAGCTAACT
CCCTTGGCACACTATCCATGAAATGCATCTTCTTGAATAAGACTTGCCTC
AGCCTTTAGTAAGTCAGTTGTGCTTTTCAGGGTCTAAGATCACATCCAGC
AAGCCAGTCGCTGTACTCAGCGGTAATCTTGCAGCCATGATTGGACAGGG
TGCGACAAGTAAAGACCATCTCGTGGAGATGGTCCCTCCTGTGGAAACTT
GGGGCACAGAGTTTGCACTTGTGCCAATGGTAGGGAGAAAGGCTGGAGAT
CTGTTCAGGGTCCTGGCTTCCCAAGACAACACACAGGTGCAAAGAAAATG
TTTTACCTTTTTTCATGTATACACAGCATGCTATCCATTTGGAGTATTTT
TTGTCCAAAATGAAGCTGCATTAATTTTTTGGAGAGGTAGAGGGGGAGAG
GAAGCAAAAGAGGGAGAGAGAAAGAACATACAAAACCATGTACTCTCCAG
GGGATCGGTAAGCTGTAAGCAGTAAGATAGTCAGGGCAGGCTTAACAAAA
TTTTAATTGTGTTGTGCTGTGTGTTTGCTTGCAGCTTGTCCTGACAGACC
ACCTGGCCCCTATTATCCTGAATGCAGGGGAGTTTTGGGAGTTCAATATG
CCTTCAGACCAATACAAGTACCTCACTGCTAGTAAACCTGCCTTAGTCGC
ACAATACAGGTAAGAAAAACATCCAAATGCATCCAGATTTAAGGATAGCT
TTCTGCTTAGCATCATGATGCAGTAATAGTAGACTAATACAATTGCATTT
GGGTGATGCCCCAAGCACAGAATTCCAAGAATTGAAAAGCTTTTACTTGT
ATACTCATTATTGTGTACGTTTTAGGGCTCATTTATCCACCTGTCTTCAC
TTTGTTTGAACTCAGGTAATAATGCTCGAGACAAAGCAAAATTGCAAGGA
GGAATATCATAGAGAATAATGATGGGGAGCTTGGGTCAATGAAAATAGAT
TTTAGGTCATGTTAGTTATTACTGATATTTCATTGAGATCCGTCCTTGGT
GCTGAAATAAAAACTGCTGGCACAGAATTTCCTTGATATTATTTTATCCT
TGTTCTCTGTGCAAGGGGGGTGTCCCTCTGGTGCAGTGGTCTGCGCTTCT
GTTACTAGCCACATGATGGTTCAAATTACTTGGACCAGAAGGACCGGGGT
TCAAGTCCCGGGTAGGGCACCTCTGGACAAGAGGCGCATTGAGTCTTACC
AAAGACTTTATAAAAATGGTACATACTTCTGAAACAGTATGGAAGTTAAA
CACACTCCACTGCCAGTGGACTAGCCCCCTGCTGCAGTGATTGCACCACA
GTGTGGCCAAGGGCTATGAAATGGGGATGGGCGCCGCCCTATGCACCTTA
TGGTTTGGGAGGATTTTAACTAACTCTCTGTGCAAGAAATAGGAAGTATG
TTTAAAAAATACAATGTTGAGTCATTCAACTGTGTTAGCTGCTATCATAC
ATTTCAATCCTTTTTTAACCACCAATTCTGTGTGCTTGTTCATACTTTGC
AGCAAGTCACAAAACATTGACGTGTCGGCGATTGAACCCTTCATGATGAT
AGTACCGTCTTTAAGCCAATTTGCTGCAAGATACACGTTTGTTGCGGCAG
ACATCACATCTGAGAACCCCATGATTCATCACGTGAACATCGTCATTAAG
GCTTCACATAAATACGGGCTTCGTATGGACGGCACACCACTTTCCTCGGA
TATAACATGGGCAGGGATACCAGGAACAGACTTGTCTGCTGCACACATCC
CCATCACAAGTGGTGCCCACGTCTTGAACCACGCTTCTCCTCTTGTCATT
TTTGGGATTTCTGTTTATGGCTACAATCAAGAGATGCCACTGTGGTCCTA
CGGTTATCCAGGAGGGCTCAACTTGAACATGTCGTGCATCAGAACTCTGC
AGGTTGCTGGCGATGGTGTTGACAATGACTGTGATCAGCTTTTTGATGAG
GAGATTCCAAATGGGATAGATGATGATGGTGATGGGTGGACGGATGAAGA
TGTTCCAGCTACTGGTCAGTGTAAACATGATCTCCTACTTACAGATCTCT
TGTGTTTCTTTTAATGGAAATGGGTCAACATTACTCAGTTTGATAAGCCT
TCAGAATGGTGCAGGGTACCGGTGTACAATAACTTCTTTAAAATCAAATT
ATTCTTTACATATTTCACTACTAAGTCACCTGTATTGTCAAGAACATTGT
GGAAACAAGTCATGTGTTGCGGCAAAAATAGTTACTCAAGCAACTGGATA
AAATTCTGTGAGGATGCTCCAACAGTACTTGATGACAACGAGTTCCATTC
TACTATGGAATAAAGGAAAGAATAGAAAAAAACTAAGATTCATAAATATT
TAAGGCAGCAATCAATCAATCAATCAATCGATCAATCAATCAAATGGTTT
TTATTGTCAACAAAAGTCTCGCAGCCAGAGGCTGAATTGCGGTTTGTTTT
ACAAAGTGCACAGTCAGGCACAATTAAAACAAGTTCAAATTCCAAGTACA
CCTTAAGTCAAAACAATAGCAAACGTGCTTGGTCACGTGCTTCCACTTTC
GAATATACTCTTTGGGGTTTCAAAATATACAACATTATCATACAATCTTA
CATAAAATACATCTTATTTGTTGTGGTCGGCATTTACAGTTCTACTGTTT
ACTAGGGTTGTCATGTATGGTTTGCTACTTCTTTTATACCGTTCAGTTCT
GGGTTTTTATTTGGTCGAGTTGCTGGAGCGTGTGGTTCCTAGAGAGGTCG
AACTGACAGAGTTGTTTTAGCAATGAAGAGCTTTTGGTTGCCTTGTCTGA
CAGTGTGGTCCACGTGGGTATTCTAACAGAGATCGGCCTGGATTTGCAGA
CCAAGTAGTTTTACTGTCACCACCTCTTCCAGTGGTTCGCCGGCGATGAA
CAGTGGTGGCAGCAGTAGAACTGTTCTCGTAAAGAACACATACATGACCT
TACACTTTCTCGGGTGAAGTCGCATTTTCCTGGATGATGCTCATTGGTCG
AGGTTGTCAAGGTCAGTTTGGATGGTTGAGGCGTCCCTGATTGCCCTGCT
TTCTGCTAGGTTGAGATCGTCAAAAACCTTCCACCGCCTAGCTAGGGAGT
TATCACATGCACTATTGATAAGGGCAAGGAATATCAGTGGGCCTAAAACA
GTTCCTTGTGGAAGACCACAGATCCAGTCTGGGCAAGTTCCCTTGTACAT
CACTCTCTGTTTCCTAGCAAAGAGAAAGGAGCATATCCATATGACCTAAC
TTCAGTAAGCTTGAGACAGCTAGGGTATGGTCCACCTTGTCGAATGCCTT
TCCGAAATCTTGTTTACAATAGTAACCAATGTTGTTATTGTTCCCCGTTT
GTCAGATGATAGGGTCTGTCCTTAGTGCTGAAATAGAAGCCGTAGACACC
AACTTTCTGCTTTTAAAGTCCATGATGTTGAAAAATGACATGCTTTCCCA
TCACTCTGTTGCAAGAATTTAATTTGCTTTGTGATGGAACCTGAGCATTT
TGCTTCCTTTCATGTTGATAGGCTGTGATAAACCAATGGGGATGGAGTCA
GGATTCATACCAGATGGAAGTATCACTGCTTCATCCGAATTTGATCATTC
ATTGAGGGCTTCTAGAGCAAGGCTCAACATACAAAATGATGAAGGGGGCC
GTGGGTCATGGGCTGCTAGACAAAGGAACATCAATCAATGGCTACAGGTA
AGGTAGAGGAGACGACGATGATTCTATACTGGCACAATTCCAAATAGCCA
CAAGATTA Coding sequence (CDS) from alignment at Sc0000067:605253..609510- >transcript:BL96442_cuf10 ID=transcript:BL96442_cuf10|Name=transcript:BL96442_cuf10|organism=Branchiostoma lanceolatum|type=CDS|length=5430bp|location=Sequence derived from alignment at Sc0000067:605253..609510- (Branchiostoma lanceolatum)
ACCATCACATTAGACAGAATGGAGAGTCTACAAGTTCAGAGTGACGAGGA
CCTGACAGGGTCTAAGATCACATCCAGCAAGCCAGTCGCTGTACTCAGCG
GTAATCTTGCAGCCATGATTGGACAGGGTGCGACAAGTAAAGACCATCTC
GTGGAGATGGTCCCTCCTGTGGAAACTTGGGGCACAGAGTTTGCACTTGT
GCCAATGGTAGGGAGAAAGGCTGGAGATCTGTTCAGGGTCCTGGCTTCCC
AAGACAACACACAGCTTGTCCTGACAGACCACCTGGCCCCTATTATCCTG
AATGCAGGGGAGTTTTGGGAGTTCAATATGCCTTCAGACCAATACAAGTA
CCTCACTGCTAGTAAACCTGCCTTAGTCGCACAATACAGCAAGTCACAAA
ACATTGACGTGTCGGCGATTGAACCCTTCATGATGATAGTACCGTCTTTA
AGCCAATTTGCTGCAAGATACACGTTTGTTGCGGCAGACATCACATCTGA
GAACCCCATGATTCATCACGTGAACATCGTCATTAAGGCTTCACATAAAT
ACGGGCTTCGTATGGACGGCACACCACTTTCCTCGGATATAACATGGGCA
GGGATACCAGGAACAGACTTGTCTGCTGCACACATCCCCATCACAAGTGG
TGCCCACGTCTTGAACCACGCTTCTCCTCTTGTCATTTTTGGGATTTCTG
TTTATGGCTACAATCAAGAGATGCCACTGTGGTCCTACGGTTATCCAGGA
GGGCTCAACTTGAACATGTCGTGCATCAGAACTCTGCAGGTTGCTGGCGA
TGGTGTTGACAATGACTGTGATCAGCTTTTTGATGAGGAGATTCCAAATG
GGATAGATGATGATGGTGATGGGTGGACGGATGAAGATGTTCCAGCTACT
GGCTGTGATAAACCAATGGGGATGGAGTCAGGATTCATACCAGATGGAAG
TATCACTGCTTCATCCGAATTTGATCATTCATTGAGGGCTTCTAGAGCAA
GGCTCAACATACAAAATGATGAAGGGGGCCGTGGGTCATGGGCTGCTAGA
CAAAGGAACATCAATCAATGGCTACAGGTAAGGTAGACCATCACATTAGA
CAGAATGGAGAGTCTACAAGTTCAGAGTGACGAGGACCTGACAGGGTCTA
AGATCACATCCAGCAAGCCAGTCGCTGTACTCAGCGGTAATCTTGCAGCC
ATGATTGGACAGGGTGCGACAAGTAAAGACCATCTCGTGGAGATGGTCCC
TCCTGTGGAAACTTGGGGCACAGAGTTTGCACTTGTGCCAATGGTAGGGA
GAAAGGCTGGAGATCTGTTCAGGGTCCTGGCTTCCCAAGACAACACACAG
CTTGTCCTGACAGACCACCTGGCCCCTATTATCCTGAATGCAGGGGAGTT
TTGGGAGTTCAATATGCCTTCAGACCAATACAAGTACCTCACTGCTAGTA
AACCTGCCTTAGTCGCACAATACAGCAAGTCACAAAACATTGACGTGTCG
GCGATTGAACCCTTCATGATGATAGTACCGTCTTTAAGCCAATTTGCTGC
AAGATACACGTTTGTTGCGGCAGACATCACATCTGAGAACCCCATGATTC
ATCACGTGAACATCGTCATTAAGGCTTCACATAAATACGGGCTTCGTATG
GACGGCACACCACTTTCCTCGGATATAACATGGGCAGGGATACCAGGAAC
AGACTTGTCTGCTGCACACATCCCCATCACAAGTGGTGCCCACGTCTTGA
ACCACGCTTCTCCTCTTGTCATTTTTGGGATTTCTGTTTATGGCTACAAT
CAAGAGATGCCACTGTGGTCCTACGGTTATCCAGGAGGGCTCAACTTGAA
CATGTCGTGCATCAGAACTCTGCAGGTTGCTGGCGATGGTGTTGACAATG
ACTGTGATCAGCTTTTTGATGAGGAGATTCCAAATGGGATAGATGATGAT
GGTGATGGGTGGACGGATGAAGATGTTCCAGCTACTGGCTGTGATAAACC
AATGGGGATGGAGTCAGGATTCATACCAGATGGAAGTATCACTGCTTCAT
CCGAATTTGATCATTCATTGAGGGCTTCTAGAGCAAGGCTCAACATACAA
AATGATGAAGGGGGCCGTGGGTCATGGGCTGCTAGACAAAGGAACATCAA
TCAATGGCTACAGGTAAGGTAGACCATCACATTAGACAGAATGGAGAGTC
TACAAGTTCAGAGTGACGAGGACCTGACAGGGTCTAAGATCACATCCAGC
AAGCCAGTCGCTGTACTCAGCGGTAATCTTGCAGCCATGATTGGACAGGG
TGCGACAAGTAAAGACCATCTCGTGGAGATGGTCCCTCCTGTGGAAACTT
GGGGCACAGAGTTTGCACTTGTGCCAATGGTAGGGAGAAAGGCTGGAGAT
CTGTTCAGGGTCCTGGCTTCCCAAGACAACACACAGCTTGTCCTGACAGA
CCACCTGGCCCCTATTATCCTGAATGCAGGGGAGTTTTGGGAGTTCAATA
TGCCTTCAGACCAATACAAGTACCTCACTGCTAGTAAACCTGCCTTAGTC
GCACAATACAGCAAGTCACAAAACATTGACGTGTCGGCGATTGAACCCTT
CATGATGATAGTACCGTCTTTAAGCCAATTTGCTGCAAGATACACGTTTG
TTGCGGCAGACATCACATCTGAGAACCCCATGATTCATCACGTGAACATC
GTCATTAAGGCTTCACATAAATACGGGCTTCGTATGGACGGCACACCACT
TTCCTCGGATATAACATGGGCAGGGATACCAGGAACAGACTTGTCTGCTG
CACACATCCCCATCACAAGTGGTGCCCACGTCTTGAACCACGCTTCTCCT
CTTGTCATTTTTGGGATTTCTGTTTATGGCTACAATCAAGAGATGCCACT
GTGGTCCTACGGTTATCCAGGAGGGCTCAACTTGAACATGTCGTGCATCA
GAACTCTGCAGGTTGCTGGCGATGGTGTTGACAATGACTGTGATCAGCTT
TTTGATGAGGAGATTCCAAATGGGATAGATGATGATGGTGATGGGTGGAC
GGATGAAGATGTTCCAGCTACTGGCTGTGATAAACCAATGGGGATGGAGT
CAGGATTCATACCAGATGGAAGTATCACTGCTTCATCCGAATTTGATCAT
TCATTGAGGGCTTCTAGAGCAAGGCTCAACATACAAAATGATGAAGGGGG
CCGTGGGTCATGGGCTGCTAGACAAAGGAACATCAATCAATGGCTACAGG
TAAGGTAGACCATCACATTAGACAGAATGGAGAGTCTACAAGTTCAGAGT
GACGAGGACCTGACAGGGTCTAAGATCACATCCAGCAAGCCAGTCGCTGT
ACTCAGCGGTAATCTTGCAGCCATGATTGGACAGGGTGCGACAAGTAAAG
ACCATCTCGTGGAGATGGTCCCTCCTGTGGAAACTTGGGGCACAGAGTTT
GCACTTGTGCCAATGGTAGGGAGAAAGGCTGGAGATCTGTTCAGGGTCCT
GGCTTCCCAAGACAACACACAGCTTGTCCTGACAGACCACCTGGCCCCTA
TTATCCTGAATGCAGGGGAGTTTTGGGAGTTCAATATGCCTTCAGACCAA
TACAAGTACCTCACTGCTAGTAAACCTGCCTTAGTCGCACAATACAGCAA
GTCACAAAACATTGACGTGTCGGCGATTGAACCCTTCATGATGATAGTAC
CGTCTTTAAGCCAATTTGCTGCAAGATACACGTTTGTTGCGGCAGACATC
ACATCTGAGAACCCCATGATTCATCACGTGAACATCGTCATTAAGGCTTC
ACATAAATACGGGCTTCGTATGGACGGCACACCACTTTCCTCGGATATAA
CATGGGCAGGGATACCAGGAACAGACTTGTCTGCTGCACACATCCCCATC
ACAAGTGGTGCCCACGTCTTGAACCACGCTTCTCCTCTTGTCATTTTTGG
GATTTCTGTTTATGGCTACAATCAAGAGATGCCACTGTGGTCCTACGGTT
ATCCAGGAGGGCTCAACTTGAACATGTCGTGCATCAGAACTCTGCAGGTT
GCTGGCGATGGTGTTGACAATGACTGTGATCAGCTTTTTGATGAGGAGAT
TCCAAATGGGATAGATGATGATGGTGATGGGTGGACGGATGAAGATGTTC
CAGCTACTGGCTGTGATAAACCAATGGGGATGGAGTCAGGATTCATACCA
GATGGAAGTATCACTGCTTCATCCGAATTTGATCATTCATTGAGGGCTTC
TAGAGCAAGGCTCAACATACAAAATGATGAAGGGGGCCGTGGGTCATGGG
CTGCTAGACAAAGGAACATCAATCAATGGCTACAGGTAAGGTAGACCATC
ACATTAGACAGAATGGAGAGTCTACAAGTTCAGAGTGACGAGGACCTGAC
AGGGTCTAAGATCACATCCAGCAAGCCAGTCGCTGTACTCAGCGGTAATC
TTGCAGCCATGATTGGACAGGGTGCGACAAGTAAAGACCATCTCGTGGAG
ATGGTCCCTCCTGTGGAAACTTGGGGCACAGAGTTTGCACTTGTGCCAAT
GGTAGGGAGAAAGGCTGGAGATCTGTTCAGGGTCCTGGCTTCCCAAGACA
ACACACAGCTTGTCCTGACAGACCACCTGGCCCCTATTATCCTGAATGCA
GGGGAGTTTTGGGAGTTCAATATGCCTTCAGACCAATACAAGTACCTCAC
TGCTAGTAAACCTGCCTTAGTCGCACAATACAGCAAGTCACAAAACATTG
ACGTGTCGGCGATTGAACCCTTCATGATGATAGTACCGTCTTTAAGCCAA
TTTGCTGCAAGATACACGTTTGTTGCGGCAGACATCACATCTGAGAACCC
CATGATTCATCACGTGAACATCGTCATTAAGGCTTCACATAAATACGGGC
TTCGTATGGACGGCACACCACTTTCCTCGGATATAACATGGGCAGGGATA
CCAGGAACAGACTTGTCTGCTGCACACATCCCCATCACAAGTGGTGCCCA
CGTCTTGAACCACGCTTCTCCTCTTGTCATTTTTGGGATTTCTGTTTATG
GCTACAATCAAGAGATGCCACTGTGGTCCTACGGTTATCCAGGAGGGCTC
AACTTGAACATGTCGTGCATCAGAACTCTGCAGGTTGCTGGCGATGGTGT
TGACAATGACTGTGATCAGCTTTTTGATGAGGAGATTCCAAATGGGATAG
ATGATGATGGTGATGGGTGGACGGATGAAGATGTTCCAGCTACTGGCTGT
GATAAACCAATGGGGATGGAGTCAGGATTCATACCAGATGGAAGTATCAC
TGCTTCATCCGAATTTGATCATTCATTGAGGGCTTCTAGAGCAAGGCTCA
ACATACAAAATGATGAAGGGGGCCGTGGGTCATGGGCTGCTAGACAAAGG
AACATCAATCAATGGCTACAGGTAAGGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000067 | genome | Sc0000067:605253..609510 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96442_cuf10 |
| Biotype | protein_coding |
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