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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96412_cuf0 >transcript:BL96412_cuf0-protein ID=transcript:BL96412_cuf0-protein|Name=transcript:BL96412_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=221bp
PHVTWHRHLQKLHTDRKYRVLSRDHVYCLRLRRVEPCDAGEYLCVATNPS
GRETTQVILTVKDPPPVMTSESPRSAFQTFGDADKPETEVKKTPFGVLRK
IITRGHPLLRRQDAQEQEAPQFERDLSDQEAEEGRAARFHCTVSGLPDPT
VSWRKDGHDVTHKRKYVMERDSRGGCSLVVPTVTKEDEGEYACVAKNEAG
KAKSSGRLKVKPQGSMMPNAF Run BLAST on NCBI mRNA from alignment at Sc0000008:5777954..5784875+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96412_cuf0 ID=transcript:BL96412_cuf0|Name=transcript:BL96412_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=6922bp|location=Sequence derived from alignment at Sc0000008:5777954..5784875+ (Branchiostoma lanceolatum)
CCGCACGTGACCTGGCACAGACACCTGCAGAAACTGCACACGGACAGGTG
AGAACACACCTGCGGAAACAATAGCCTCTACCAGGCTCCACAGGTCGGTA
ACTATAGCCTATACCAGGCTCCATGGGTCGGTAACTATAGCCTCTACCAG
GCTCCACAGGGCGGTAACTATAGCCTATACCAGGCTCCATGGGTCGGTAA
CTATAGCCTCTACCAGGCTCCACAGGGCGGTAACTATAGCCTATACCAGG
CTCCATGGGTCGGTAACTATAGCCTCTACCAGGCTCCACAGGGCGGTAAC
TATAGCCTATACCAGGCTCCATGGGTCGGTAACTATAGCCTCTACCAGGC
TCCACAGGGCGGTAACTATAGCCTCTACCAGGCTCCACAGGTCGCTGGAA
AAATCGAAGAAATTGGCCAAATGGTAGTCTGTATAACGCAAGCTCCAGCT
GTCCGGGGATTTCTGTCCCCTCCCCGCGGAAGCTATTGGGCGGCTATGCG
GTTACAGGGCGGCAAGCCGTTACAGGAGCTTGATTGAGTGCAGGCTAGCC
AAATGGATGCCAGAGAGGTTAGTCCGTTGTAGAAGTTAGAAGATGGCATA
TTGGACCCTCTCTCCGTAGCCTACTCTCTTAGCGTACTATTCACTCTATT
TGGCCAATTTGTAATATTTTTCCAGCTATCCGCGGGGCCTGGTAGAGGCT
ACAGAAACGACACACGGACATGTGAGAACACCTGTAGCACATTAACACCT
GTCTCGAGCTCCGTAATTATTAGTTAAGTCCTTGTAGTACCTCTTTTGCT
CTACCGACGTCACGGAAACATCTTCAGCGGATCATCTCCTGAACTTGAGG
CGCGTCCTCAACACCTGACGCTTCTCGCCTGTCTCTGCTCGTGTGATGAA
GTGTTTTTCCTGCTACTCCCGTAGTCTCTAGTAGTGTACTTCTCTTGGCT
GCAACAGAAGTGATGAACTCATGTAGACTTGCCCTACTCTTTCGAGTGGC
TGTCAACACTGCTCTTGGCGGCTGGTCGCGAATTTTGCCCCTCCACATGA
GCGGTCTTCAGTCTACGTTCTACGTCGCGTCTTCTGCGTGACTCTCGGAT
TTCACATTTTCCGGCGGTCCAGAAATTACCACAACAATGCTCATATTATT
TCAAATCCCATTGTGACCTTGATCTCGACCTTGCCTCTGCAGGAAGTACC
GTGTGCTGTCACGTGACCATGTGTACTGTCTGAGACTGCGCAGAGTGGAG
CCGTGTGACGCGGGGGAGTATCTGTGCGTGGCCACCAACCCCAGCGGGAG
GGAAACCACACAGGTCATCCTCACGGTCAAAGGTAGGGTCACTCAGGGTT
AAAGGGTAAAGGTAAAATCAGAGGTCAAAGGTTGATGATCACCACTGAGA
GCGTTGAAAGGGGAAACATCCACATCAATACAACGCAGAGTTAGAAGGTA
ACGTTTATTTTAAAATCATGTCAAGGTCAACGGGAGAAGGTCAACATGGT
TTAAAGACAACCAAAGGTAAAAGGGCAGAGGTCACTCACCAAGGTCAAGA
CCAGATGTAGATCTTGGCTTGGTCGAGTTCAAACTTGTGTGAGGTCTGGC
GGTGCCCTTGACGGCCCTCTCTGTCCATGTCAGAGTTCAGAGTTCAAGGT
CTACAGGTCAAAACTTCATCTAAGTCTAACTTTCTTGATTCGGAGAAACC
CGCTTCTCCTGAGACGTTGCCGCCAGCTGTGTCACTAAGACATGTCCCTC
AAGTCGGTTCCGCTTGTCATTTCCTCATGACGTCACGTGATGACGTAGGT
GAAGGTTATGCCTAAACACTGAACGGGCGGATAAACATGGCGGAATTCCA
GGGTAGAAAAGTTGACTCCGCGTGAGGAGGGACGCCAAATATTCCCCCGG
AACAACGTCGTTAACAGTTCCTGATTCTCCTGTGTACTAGGATGTTGAAG
GAAACGACCGCAACGTCATTGTAAAGGAATCTAGCGCGGCATACATGTAC
ATGTATCACTGTGCTACAAAAACAAAACGGCAGAATCTTAAAAGATGTCC
GTTTCTATTCTTGAGAAACAGAAGAAAAACAAGGTTACATACCAGGGGCC
CCAAAATCGACCTTGAACTTCGGCTTCACAACACCTGCCCACATACCAAA
TATCATCGTAATCCATCAAGAGGTTCTTGAGTTATGCTAACTACAGAAGT
GCGGAAACACAAACACACATACACACACACACATACACACGCACACACAC
ACACACACACACACAGACACACAGACACACCCAAAACTATATCTCCATTT
TTCATGGAGATGATAACATCAAAAGATCATCACATTTTTTCTACCATTTC
TGTACCAGTAGTTTGCCACTGTTACATGGCAATGTTCGTGTGTAACGTAA
CCACCAGGCCAGATATCATATAGCTGTTGTAAATAGAGAAATGTGACTTT
CACTCGTTTCTGCTGCAACTCAAGAAATAAACACAAACATGCTCATGACT
TACTAATCCAGAAATAACATACGATAGTGGTTGATTAATTGTTTTGTACA
GAAGTAATGCTAGGGTCACATTTCCAATCCGGGGCCCGGCCAGGCAGTCT
TTGGGAACGAAGAGTATGATGTAAAAGACAACAAAAACACAAAACGTACT
CGAAATTATTTAAGAGCATAGCTTGTGCAAATTTATGGACATACACTTTG
GTTTTTCGATTTTTCGTGTCCGCAAACAGCCCGGCCGGGCCCCGGTTAGA
AAATGTGACCCTAGCATTAGGCATGGGGGCAAAAAGCACCTGATGAAAGA
ATTGGCGTGAGCAACAGCAAGGAATTCGTTTCTTCAAATCCTGCAAAAAA
CATTGCAAACTGCCTGAAACGTGCGAGGATCGAAAATAGCTGTACGAATG
GCGCATTCCTGGAAATGACGATCGGATTGTGTACGTCAATATTTGTTTGT
CAACAAGAACGTGTGAAGAGCGCGGCCAGACTCTGTAAACAACCAGAGTC
ACGTACACAGAACCGCGGGTCAACACGCGAGGGTTTGTTCTGGGTGTAAG
TTTGGCTATTGAGGATAGCATGAAAGGGAACAACAGCAAGAAAGCATACC
GAGTACCAACCAACTCTTGATGGTAACAAATATGGCAAGTTTGATATCTG
GACCAGAGCTGCCTTCAGCTTTTACATTTTTTCCGTCCACCTTTTGTTTG
GGAGACCATGTTTTGAATTTTCGTCGTTAGATTAGTCATTTTAAGCTAAC
GAAGATACATTTCCATCAATTTCATGTCTTAAAGTTCAGATTTTGGGGCG
GACAGACTGTATTCTTTCCGTCCCGTCCTATTACTATGTTCTCTTTATGA
GTAGTCTTCAGCCCCTCTAGAAAAACAGTTGTTAAGTGTGCGACCCTCTC
GGTATGTTTGTTACTAGTCCCACTCGACGAAAAAGTGTTTTAAGTAGAAA
CAAGCGAGTTGTTTATGATGGTTACAAGCCGTAAACGGACAGCCAGTCCT
TTTTATGGAACTGCGGTCGAAAACAAATATACGCGTTACAACTCATGACT
TCAGTTTTATGAATGAGTGAAAGTTCACTTGTAAAGTTATCTGCTACATT
GTAGCTAAATATTGGGGGTGGGGGCTAGATTGGGCCATTCCACTGGGCAA
TCTGAGAGAGGGGTGGATCGACATAATTTCTTAATCAACATTTCTGCAGC
ATTGCTCTGATACAGGGGAAAAGCTAGAAGCAGTCCCTTACTGATACATC
CCCTTCCGTTCTGTGGGATGTTCCGACTATTGGCTGAATTCGAATATATT
ATTCATATTTAGAAAATCTGTCAAAAAGTCTCCCTACGTTCTACATAGAC
CGGTCCATTTTATTAACGTTTCCACGTTCTGACTTTGCGGACCGTTTGAT
GTAAGATCATGTAAATCCCGGATGTTTCTGATCATCGATTCAAAGAGATT
TTCCTGTCTGTTCAACTGAGAAAATCAGGCAAGGGCCGAAGGAAGGAGAA
GAAAAAGATGAAAAGAATAAGAATGAAAGAAAAAATATCCCCCCTCCCCC
AAGTCGCCTGTACAAACCGGCATGTTGACCTACCCTCTCACGAACGACCT
CTGAGTGTACCAAGGTCAAGCACTCTTCAGTCCAGTTTGCCCACCTGTCG
CTCTTACACACCTGTACGGCGCCGTACCGCCCACCCACGCCGTGACGTCG
TGTGTCAGAATGACGATTCCTACCTGCCGCCGCCTACGCACGGTTAGAAC
GACCCTTATCGCGTTAACTCGGCGTTTGATCAGATCAGCGTGTTTTTCTG
CGAGGTTATCAGCCCGTATCTTTCCTCTCCACCCCAGCCTGGAGACAGGC
TTGTTTTCGCGCCGCGGCGACCAGAAATGACCCACTTGAACCTTGTACAG
TGTGCACATGTATGTACACTTACTTTGTTCTATAGCCTGGTTAGCGGCCT
ACATAGAAGGCGTCCAAATGGGTTTTGACATTGTCGTTTTGTTGCTGATT
CGTCACTGACTTGCTCGAGCTCGCCCGAAACCTGTATGACTGTGTCTCTT
TATCTATTCCTATCATCCATCGTAGCGATCAGGGAATTTTAATCCAGGTT
TGTATCTTCTCGAAGTTGTTCGATGTGGTTTTTAAAAGGCTTTTTCACGG
CCTCTTTTTCCTGAAAGGGTTCTGTAATGTTTTCTGACTCTCCCAAGCAC
CTGACAGGGTCGGATGGCAAAAAACGGGACATGCGAGGCCAAAATCTTCC
CAATCAACTTCTGCCGGGAGGGTACTGTTTTCTGACCGTGTTCTAAAAAG
TGTACTTGATACATCATAACACGGTAGAGGTCAGAAAACAGTACGTAACC
CGGAAACAAGGTATGCCCAGACGCCTGCCAGGAGCCCGTTGTGTAGACTA
GCTTGTTAGTGTGGGAGTTTTTGTGTGCCCACACTTCAGCTGTTTTCCGC
TGTTACCTGTAAGTGTGTCGCTCTGTGTTGCGACATGGCTTCACGCGTGC
CGTCTTAGCTCACCTGGCGTCGAGGTAGGTTTAAGGAGTCAGGAAGACGT
TTTAGAAACGTGTCTCAGAATCCTGGCGAGGCCTTGGAACTTAAAGACGT
CTTTGTTTTGACGTTTTCTTGGTTGGTCATATTTTGTGTTTATTACTACA
TGACGTAGTTTGGTAATCTCTAAGCAGATACTGGGAGGAAAGACGGGAAC
ATTTTCCACCTTGTGTGTCAGAGAAAACGGAACAGGTGAAATATCGCGGT
CTTCCCTGCTAACATCTACTTTGAAATGCGTCGCTAGTCGTACAAGACGT
GGTGATTGCTCCTTATCGTGTGAAGTAGCGAAATAAAGCGACTCATTATA
ATTACCCGATCGAGCCGTGTGGAAAACAACAACAATAGGTAATGGCGACA
TGGGAGGAACGGAGCCGTAGAGATGGTTTTTACATTCAACCGTACATACT
CTGGGCAGTGGTTTTATTCCTGGGTTTTTATACACGTATAAGTAATACTT
CTTTTGTCTTGTTGTACTTTTAGATTTTTTTCGAGCTTTATTTTACAGGC
AAAGTAACATGCAAACACACGATGCATTATTTATAGAATATAGCTGCATA
CAATATATCATACATAAACAACATATGTATATGGTCAGTACAGTGTGCTG
TAGTTTCTATGAAACAAATCCAAAAAGTACTCAAACGTATGTATTCGTTC
TACCATGTCGGCATGTCAGGTGATCCTATATCATTTTGTAAATGTGTGAC
TATAATTTCAACAAAGATGCTATTGTGTATCTGTATTGCCAAAGATTGCG
TAATTCAGCCAGTCTCATAACTGTATTATTTAGCTGCAGTGTTGTTTTAG
TGTATCTGTGTGCCGATCTGTCAATAAACTAATCTGTCATTTTACCCCCG
GGCATGCGCAGACCCACCGCCCGTGATGACGTCAGAGTCGCCCCGCTCCG
CGTTCCAGACCTTCGGTGACGCGGACAAACCAGAAACGGAAGTGAAGAAA
ACGCCATTCGGTGTTCTGCGCAAGATCATCACCAGAGGACACCCACTGCT
GAGGAGACAGGTCAGAGAGCCTTTGAACTTTGACCCGCTCATGACGTCAC
ATTTCTATAAAGTCACGTGACAGAAGGGAGTGGGTTCATATTCCCGAAGA
GGGCTATATGTGCTTGTGGAGTATAAAGGTTGTTTTGCTACATTGTCGGT
TCGCTACAATACCAAAAGTCATTCCGCCTCATCCGAAAGTTCGTTTCGCC
ACTGTTCGTTGGTTAAAATGCATAAGTTTCACTTTAACTTACGATGATAG
ATAAAGTCTGTGTAAAAATGTGTAAAAATATGCAATAAAGTTCATTTATC
TTTCTAAACTCATCCCCCTGTAGGATGCTCAGGAGCAGGAGGCGCCGCAG
TTCGAGCGGGACTTGTCGGACCAGGAGGCGGAGGAGGGCCGAGCGGCGCG
CTTCCACTGCACGGTGTCCGGACTCCCGGACCCCACCGTCTCCTGGCGCA
AGGACGGACATGACGTCACGCACAAACGGAAATACGTCATGGAGAGGGAC
TCGCGCGGCGGCTGCTCATTGGTGGTTCCCACGGTGACCAAGGAGGATGA
GGGCGAGTACGCCTGCGTGGCCAAGAACGAGGCTGGCAAGGCCAAGTCGT
CGGGTCGGCTGAAGGTCAAACCTCAAGGTCAACCGTCTTCTCTTCTCTTT
ACTTTAGTTCATTTGATTTTATTCACGTGCGACGGTTGGAAAAAAAAGCA
AAAGAGTGCTTATAAAATTAGAAATCCTCTGGTCATGAAATAACAAAATA
AGAACTACAACCTGTTACACTTTGTTGTAAGTGCAAGTCTAGACTAAATG
AATTGTCAGTGGTGTTCGATGTTATTTACCTGTTGTTTGTTTACCGCAGG
CTCCATGATGCCGAACGCGTTC Coding sequence (CDS) from alignment at Sc0000008:5777954..5784875+ >transcript:BL96412_cuf0 ID=transcript:BL96412_cuf0|Name=transcript:BL96412_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3315bp|location=Sequence derived from alignment at Sc0000008:5777954..5784875+ (Branchiostoma lanceolatum)
CCGCACGTGACCTGGCACAGACACCTGCAGAAACTGCACACGGACAGGAA
GTACCGTGTGCTGTCACGTGACCATGTGTACTGTCTGAGACTGCGCAGAG
TGGAGCCGTGTGACGCGGGGGAGTATCTGTGCGTGGCCACCAACCCCAGC
GGGAGGGAAACCACACAGGTCATCCTCACGGTCAAAGACCCACCGCCCGT
GATGACGTCAGAGTCGCCCCGCTCCGCGTTCCAGACCTTCGGTGACGCGG
ACAAACCAGAAACGGAAGTGAAGAAAACGCCATTCGGTGTTCTGCGCAAG
ATCATCACCAGAGGACACCCACTGCTGAGGAGACAGGATGCTCAGGAGCA
GGAGGCGCCGCAGTTCGAGCGGGACTTGTCGGACCAGGAGGCGGAGGAGG
GCCGAGCGGCGCGCTTCCACTGCACGGTGTCCGGACTCCCGGACCCCACC
GTCTCCTGGCGCAAGGACGGACATGACGTCACGCACAAACGGAAATACGT
CATGGAGAGGGACTCGCGCGGCGGCTGCTCATTGGTGGTTCCCACGGTGA
CCAAGGAGGATGAGGGCGAGTACGCCTGCGTGGCCAAGAACGAGGCTGGC
AAGGCCAAGTCGTCGGGTCGGCTGAAGGTCAAACCTCAAGGCTCCATGAT
GCCGAACGCGTTCCCGCACGTGACCTGGCACAGACACCTGCAGAAACTGC
ACACGGACAGGAAGTACCGTGTGCTGTCACGTGACCATGTGTACTGTCTG
AGACTGCGCAGAGTGGAGCCGTGTGACGCGGGGGAGTATCTGTGCGTGGC
CACCAACCCCAGCGGGAGGGAAACCACACAGGTCATCCTCACGGTCAAAG
ACCCACCGCCCGTGATGACGTCAGAGTCGCCCCGCTCCGCGTTCCAGACC
TTCGGTGACGCGGACAAACCAGAAACGGAAGTGAAGAAAACGCCATTCGG
TGTTCTGCGCAAGATCATCACCAGAGGACACCCACTGCTGAGGAGACAGG
ATGCTCAGGAGCAGGAGGCGCCGCAGTTCGAGCGGGACTTGTCGGACCAG
GAGGCGGAGGAGGGCCGAGCGGCGCGCTTCCACTGCACGGTGTCCGGACT
CCCGGACCCCACCGTCTCCTGGCGCAAGGACGGACATGACGTCACGCACA
AACGGAAATACGTCATGGAGAGGGACTCGCGCGGCGGCTGCTCATTGGTG
GTTCCCACGGTGACCAAGGAGGATGAGGGCGAGTACGCCTGCGTGGCCAA
GAACGAGGCTGGCAAGGCCAAGTCGTCGGGTCGGCTGAAGGTCAAACCTC
AAGGCTCCATGATGCCGAACGCGTTCCCGCACGTGACCTGGCACAGACAC
CTGCAGAAACTGCACACGGACAGGAAGTACCGTGTGCTGTCACGTGACCA
TGTGTACTGTCTGAGACTGCGCAGAGTGGAGCCGTGTGACGCGGGGGAGT
ATCTGTGCGTGGCCACCAACCCCAGCGGGAGGGAAACCACACAGGTCATC
CTCACGGTCAAAGACCCACCGCCCGTGATGACGTCAGAGTCGCCCCGCTC
CGCGTTCCAGACCTTCGGTGACGCGGACAAACCAGAAACGGAAGTGAAGA
AAACGCCATTCGGTGTTCTGCGCAAGATCATCACCAGAGGACACCCACTG
CTGAGGAGACAGGATGCTCAGGAGCAGGAGGCGCCGCAGTTCGAGCGGGA
CTTGTCGGACCAGGAGGCGGAGGAGGGCCGAGCGGCGCGCTTCCACTGCA
CGGTGTCCGGACTCCCGGACCCCACCGTCTCCTGGCGCAAGGACGGACAT
GACGTCACGCACAAACGGAAATACGTCATGGAGAGGGACTCGCGCGGCGG
CTGCTCATTGGTGGTTCCCACGGTGACCAAGGAGGATGAGGGCGAGTACG
CCTGCGTGGCCAAGAACGAGGCTGGCAAGGCCAAGTCGTCGGGTCGGCTG
AAGGTCAAACCTCAAGGCTCCATGATGCCGAACGCGTTCCCGCACGTGAC
CTGGCACAGACACCTGCAGAAACTGCACACGGACAGGAAGTACCGTGTGC
TGTCACGTGACCATGTGTACTGTCTGAGACTGCGCAGAGTGGAGCCGTGT
GACGCGGGGGAGTATCTGTGCGTGGCCACCAACCCCAGCGGGAGGGAAAC
CACACAGGTCATCCTCACGGTCAAAGACCCACCGCCCGTGATGACGTCAG
AGTCGCCCCGCTCCGCGTTCCAGACCTTCGGTGACGCGGACAAACCAGAA
ACGGAAGTGAAGAAAACGCCATTCGGTGTTCTGCGCAAGATCATCACCAG
AGGACACCCACTGCTGAGGAGACAGGATGCTCAGGAGCAGGAGGCGCCGC
AGTTCGAGCGGGACTTGTCGGACCAGGAGGCGGAGGAGGGCCGAGCGGCG
CGCTTCCACTGCACGGTGTCCGGACTCCCGGACCCCACCGTCTCCTGGCG
CAAGGACGGACATGACGTCACGCACAAACGGAAATACGTCATGGAGAGGG
ACTCGCGCGGCGGCTGCTCATTGGTGGTTCCCACGGTGACCAAGGAGGAT
GAGGGCGAGTACGCCTGCGTGGCCAAGAACGAGGCTGGCAAGGCCAAGTC
GTCGGGTCGGCTGAAGGTCAAACCTCAAGGCTCCATGATGCCGAACGCGT
TCCCGCACGTGACCTGGCACAGACACCTGCAGAAACTGCACACGGACAGG
AAGTACCGTGTGCTGTCACGTGACCATGTGTACTGTCTGAGACTGCGCAG
AGTGGAGCCGTGTGACGCGGGGGAGTATCTGTGCGTGGCCACCAACCCCA
GCGGGAGGGAAACCACACAGGTCATCCTCACGGTCAAAGACCCACCGCCC
GTGATGACGTCAGAGTCGCCCCGCTCCGCGTTCCAGACCTTCGGTGACGC
GGACAAACCAGAAACGGAAGTGAAGAAAACGCCATTCGGTGTTCTGCGCA
AGATCATCACCAGAGGACACCCACTGCTGAGGAGACAGGATGCTCAGGAG
CAGGAGGCGCCGCAGTTCGAGCGGGACTTGTCGGACCAGGAGGCGGAGGA
GGGCCGAGCGGCGCGCTTCCACTGCACGGTGTCCGGACTCCCGGACCCCA
CCGTCTCCTGGCGCAAGGACGGACATGACGTCACGCACAAACGGAAATAC
GTCATGGAGAGGGACTCGCGCGGCGGCTGCTCATTGGTGGTTCCCACGGT
GACCAAGGAGGATGAGGGCGAGTACGCCTGCGTGGCCAAGAACGAGGCTG
GCAAGGCCAAGTCGTCGGGTCGGCTGAAGGTCAAACCTCAAGGCTCCATG
ATGCCGAACGCGTTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000008 | genome | Sc0000008:5777954..5784875 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96412_cuf0 |
| Biotype | protein_coding |
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